Wall clock time and date at job start Tue Mar 31 2020 07:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 119.62033 * 2 1 4 4 C 1.38627 * 119.16050 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.78770 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.47034 * 269.97554 * 5 4 3 7 7 C 1.76201 * 99.99825 * 180.02562 * 6 5 4 8 8 N 1.32391 * 126.26262 * 0.02562 * 7 6 5 9 9 N 1.28507 * 110.20611 * 180.02562 * 8 7 6 10 10 C 1.33103 * 109.74779 * 0.02562 * 9 8 7 11 11 C 1.39777 * 126.56750 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00016 * 179.97438 * 11 10 9 13 13 C 1.40084 * 119.99734 * 359.97151 * 11 10 9 14 14 N 1.30814 * 120.00039 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99942 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46779 * 60.00149 * 15 13 11 17 17 H 1.48499 * 109.47132 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46869 * 300.00143 * 15 13 11 19 19 N 1.36675 * 126.25634 * 179.71447 * 7 6 5 20 20 C 1.46492 * 127.15365 * 359.97387 * 19 7 6 21 21 C 1.38678 * 118.42399 * 0.02562 * 4 3 2 22 22 C 1.38176 * 119.15893 * 0.02562 * 21 4 3 23 23 N 1.31860 * 119.61682 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47210 * 269.97459 * 1 2 3 25 25 H 1.08999 * 109.47009 * 29.97609 * 1 2 3 26 26 H 1.09003 * 109.47109 * 149.97057 * 1 2 3 27 27 H 1.08000 * 120.42111 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47285 * 29.98355 * 5 4 3 29 29 H 1.09009 * 109.46770 * 149.97741 * 5 4 3 30 30 H 0.97003 * 119.99784 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47743 * 90.01496 * 20 19 7 32 32 H 1.08998 * 109.47549 * 210.02433 * 20 19 7 33 33 H 1.09008 * 109.47285 * 330.02000 * 20 19 7 34 34 H 1.07994 * 120.41608 * 180.02562 * 21 4 3 35 35 H 1.07995 * 119.61795 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.3582 2.4789 0.0000 6 16 4.6711 2.9954 -1.7062 7 6 5.5733 4.4807 -1.4156 8 7 5.8837 4.9899 -0.2336 9 7 6.5457 6.0815 -0.3805 10 6 6.7016 6.3420 -1.6764 11 6 7.3668 7.4390 -2.2312 12 1 7.4303 7.5461 -3.3040 13 6 7.9511 8.3996 -1.3956 14 7 7.8745 8.2697 -0.0961 15 14 8.8408 9.8654 -2.1369 16 1 7.8955 10.6461 -2.9748 17 1 9.3663 10.7278 -1.0482 18 1 9.9681 9.3871 -2.9768 19 7 6.0859 5.3149 -2.3693 20 6 5.9979 5.1566 -3.8230 21 6 4.2267 -0.0344 -0.0016 22 6 3.4766 -1.1949 -0.0026 23 7 2.1587 -1.1463 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5143 27 1 1.6509 2.1373 0.0004 28 1 3.7859 3.2509 0.5143 29 1 5.3076 2.3275 0.5138 30 1 8.2794 8.9347 0.4824 31 1 5.0981 5.6514 -4.1887 32 1 6.8745 5.6043 -4.2911 33 1 5.9554 4.0959 -4.0712 34 1 5.3057 -0.0806 -0.0016 35 1 3.9754 -2.1527 -0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598710207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:07 Heat of formation + Delta-G solvation = 93.700421 kcal Electronic energy + Delta-G solvation = -19339.085143 eV Core-core repulsion = 16271.090433 eV Total energy + Delta-G solvation = -3067.994710 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.55868 -40.30994 -34.24587 -33.73411 -33.34194 -32.72483 -29.41895 -28.07356 -27.57522 -26.50515 -25.52717 -23.21140 -21.38818 -20.85579 -20.33955 -17.42378 -16.72620 -16.54289 -15.91727 -15.50050 -15.37092 -14.84521 -14.77436 -14.40509 -13.79806 -13.52012 -13.36167 -13.02893 -12.72929 -12.49251 -12.34730 -12.29522 -12.22927 -11.59250 -11.46988 -11.31698 -10.98020 -10.64705 -10.42599 -9.78660 -9.65512 -9.57309 -9.46618 -9.00974 -8.75892 -8.48687 -8.43664 -6.91618 -6.69035 -4.62540 0.93369 1.05348 2.17093 2.72056 2.89467 3.03501 3.05755 3.31143 3.74849 3.83851 4.18972 4.21506 4.37410 4.44358 4.63116 5.01425 5.06326 5.27066 5.28010 5.39649 5.43881 5.46239 5.50628 5.67686 5.82098 5.84450 5.93774 6.00221 6.01671 6.27255 6.63157 6.71158 6.84025 7.19573 7.43437 7.83355 7.90313 8.12768 8.65526 8.80704 10.23367 10.57969 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.040575 B = 0.003124 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.911989 B = 8959.345319 C = 9098.120040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.124 3.876 3 C -0.155 4.155 4 C -0.019 4.019 5 C -0.058 4.058 6 S -0.039 6.039 7 C 0.041 3.959 8 N -0.285 5.285 9 N -0.333 5.333 10 C 0.348 3.652 11 C -0.447 4.447 12 H 0.084 0.916 13 C 0.078 3.922 14 N -0.736 5.736 15 Si 0.921 3.079 16 H -0.265 1.265 17 H -0.276 1.276 18 H -0.265 1.265 19 N -0.515 5.515 20 C 0.101 3.899 21 C -0.163 4.163 22 C 0.102 3.898 23 N -0.489 5.489 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.138 0.862 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.280 0.720 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.138 0.862 35 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.099 -11.606 -2.972 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.014 4.014 3 C -0.177 4.177 4 C -0.029 4.029 5 C -0.207 4.207 6 S 0.190 5.810 7 C -0.331 4.331 8 N -0.131 5.131 9 N -0.181 5.181 10 C 0.103 3.897 11 C -0.487 4.487 12 H 0.102 0.898 13 C -0.148 4.148 14 N -0.360 5.360 15 Si 0.745 3.255 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.189 1.189 19 N -0.218 5.218 20 C -0.044 4.044 21 C -0.184 4.184 22 C -0.055 4.055 23 N -0.199 5.199 24 H 0.095 0.905 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.155 0.845 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.734 -12.650 -2.244 15.535 hybrid contribution 1.395 2.089 -0.685 2.603 sum -7.340 -10.561 -2.929 13.190 Atomic orbital electron populations 1.20704 0.88815 1.03461 1.03033 1.21258 0.97002 0.88146 0.94944 1.21918 0.93994 0.99678 1.02102 1.19808 0.93628 0.94085 0.95345 1.22244 1.03924 0.96510 0.97999 1.84603 1.67887 1.20139 1.08392 1.25322 1.15540 1.02284 0.89921 1.74525 1.12476 1.07002 1.19090 1.75458 1.21888 1.08571 1.12163 1.21621 0.92532 0.88290 0.87212 1.18084 1.32548 1.03658 0.94422 0.89784 1.25804 0.95379 0.99019 0.94556 1.69998 1.30670 1.31731 1.03593 0.86164 0.79873 0.80073 0.79373 1.18931 1.20034 1.18943 1.46027 1.48602 1.21455 1.05679 1.21497 1.02393 1.01481 0.78993 1.22096 1.01875 0.92597 1.01882 1.22683 0.89324 0.98246 0.95267 1.67488 1.10083 1.29421 1.12929 0.90466 0.90604 0.90559 0.84453 0.87752 0.87717 0.90860 0.92531 0.90303 0.91562 0.84391 0.82628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 36.01 0.37 -0.52 16 2 C 0.12 1.46 6.78 -82.58 -0.56 0.90 16 3 C -0.16 -1.90 9.45 -39.44 -0.37 -2.28 16 4 C -0.02 -0.25 5.17 -104.31 -0.54 -0.79 16 5 C -0.06 -0.91 5.40 36.01 0.19 -0.72 16 6 S -0.04 -0.69 21.77 -107.50 -2.34 -3.03 16 7 C 0.04 0.97 8.09 -87.27 -0.71 0.27 16 8 N -0.28 -7.72 11.62 30.89 0.36 -7.36 16 9 N -0.33 -9.96 10.48 31.26 0.33 -9.63 16 10 C 0.35 9.66 7.53 -154.80 -1.17 8.49 16 11 C -0.45 -11.75 9.04 -38.31 -0.35 -12.09 16 12 H 0.08 1.99 7.31 -52.49 -0.38 1.61 16 13 C 0.08 1.98 5.50 -17.29 -0.10 1.89 16 14 N -0.74 -20.07 11.94 55.56 0.66 -19.41 16 15 Si 0.92 18.32 29.56 -169.99 -5.03 13.29 16 16 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 17 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 18 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 19 N -0.52 -12.38 3.26 -123.18 -0.40 -12.78 16 20 C 0.10 1.84 10.87 59.84 0.65 2.49 16 21 C -0.16 -1.94 9.82 -39.44 -0.39 -2.32 16 22 C 0.10 1.15 11.18 -17.55 -0.20 0.95 16 23 N -0.49 -6.19 10.27 -9.48 -0.10 -6.28 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.14 1.50 8.06 -52.49 -0.42 1.08 16 28 H 0.10 1.70 8.10 -51.92 -0.42 1.28 16 29 H 0.10 1.70 8.10 -51.91 -0.42 1.28 16 30 H 0.28 6.90 8.30 -40.82 -0.34 6.57 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.08 1.34 7.54 -51.93 -0.39 0.95 16 33 H 0.07 1.06 7.85 -51.92 -0.41 0.65 16 34 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -33.30 323.09 -8.92 -42.22 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -4.11 Total: 1.86 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.16 Total: -3.74 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.85 Total: -55.47 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.03 Total: 13.29 kcal Atomic # 16 Polarization: -0.69 SS G_CDS: -2.34 Total: -3.03 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.30 -8.92 -42.22 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598710207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.917 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds