Wall clock time and date at job start Tue Mar 31 2020 07:06:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38220 * 119.62033 * 2 1 4 4 C 1.38627 * 119.16050 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.78770 * 180.02562 * 4 3 2 6 6 S 1.81000 * 109.47034 * 269.97554 * 5 4 3 7 7 C 1.76201 * 99.99825 * 180.02562 * 6 5 4 8 8 N 1.32391 * 126.26262 * 0.02562 * 7 6 5 9 9 N 1.28507 * 110.20611 * 180.02562 * 8 7 6 10 10 C 1.33103 * 109.74779 * 0.02562 * 9 8 7 11 11 C 1.39777 * 126.56750 * 180.02562 * 10 9 8 12 12 H 1.07999 * 120.00016 * 179.97438 * 11 10 9 13 13 C 1.40084 * 119.99734 * 359.97151 * 11 10 9 14 14 N 1.30814 * 120.00039 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99942 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.46779 * 60.00149 * 15 13 11 17 17 H 1.48499 * 109.47132 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.46869 * 300.00143 * 15 13 11 19 19 N 1.36675 * 126.25634 * 179.71447 * 7 6 5 20 20 C 1.46492 * 127.15365 * 359.97387 * 19 7 6 21 21 C 1.38678 * 118.42399 * 0.02562 * 4 3 2 22 22 C 1.38176 * 119.15893 * 0.02562 * 21 4 3 23 23 N 1.31860 * 119.61682 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.47210 * 269.97459 * 1 2 3 25 25 H 1.08999 * 109.47009 * 29.97609 * 1 2 3 26 26 H 1.09003 * 109.47109 * 149.97057 * 1 2 3 27 27 H 1.08000 * 120.42111 * 0.02562 * 3 2 1 28 28 H 1.08993 * 109.47285 * 29.98355 * 5 4 3 29 29 H 1.09009 * 109.46770 * 149.97741 * 5 4 3 30 30 H 0.97003 * 119.99784 * 179.97438 * 14 13 11 31 31 H 1.09002 * 109.47743 * 90.01496 * 20 19 7 32 32 H 1.08998 * 109.47549 * 210.02433 * 20 19 7 33 33 H 1.09008 * 109.47285 * 330.02000 * 20 19 7 34 34 H 1.07994 * 120.41608 * 180.02562 * 21 4 3 35 35 H 1.07995 * 119.61795 * 180.02562 * 22 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5764 1.1905 -0.0005 5 6 4.3582 2.4789 0.0000 6 16 4.6711 2.9954 -1.7062 7 6 5.5733 4.4807 -1.4156 8 7 5.8837 4.9899 -0.2336 9 7 6.5457 6.0815 -0.3805 10 6 6.7016 6.3420 -1.6764 11 6 7.3668 7.4390 -2.2312 12 1 7.4303 7.5461 -3.3040 13 6 7.9511 8.3996 -1.3956 14 7 7.8745 8.2697 -0.0961 15 14 8.8408 9.8654 -2.1369 16 1 7.8955 10.6461 -2.9748 17 1 9.3663 10.7278 -1.0482 18 1 9.9681 9.3871 -2.9768 19 7 6.0859 5.3149 -2.3693 20 6 5.9979 5.1566 -3.8230 21 6 4.2267 -0.0344 -0.0016 22 6 3.4766 -1.1949 -0.0026 23 7 2.1587 -1.1463 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3633 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5143 27 1 1.6509 2.1373 0.0004 28 1 3.7859 3.2509 0.5143 29 1 5.3076 2.3275 0.5138 30 1 8.2794 8.9347 0.4824 31 1 5.0981 5.6514 -4.1887 32 1 6.8745 5.6043 -4.2911 33 1 5.9554 4.0959 -4.0712 34 1 5.3057 -0.0806 -0.0016 35 1 3.9754 -2.1527 -0.0031 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598710207.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:06 Heat of formation + Delta-G solvation = 74.059721 kcal Electronic energy + Delta-G solvation = -19339.936828 eV Core-core repulsion = 16271.090433 eV Total energy + Delta-G solvation = -3068.846395 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.47849 -41.23771 -35.65144 -35.35832 -35.04360 -33.57766 -31.35617 -29.22327 -28.47644 -28.14368 -27.37115 -24.13639 -22.84864 -22.65018 -21.83698 -19.28506 -18.05740 -17.61803 -17.31166 -16.98480 -16.57796 -16.38550 -16.19978 -15.75731 -15.16804 -14.94143 -14.50758 -14.13202 -13.91724 -13.83128 -13.79696 -13.32926 -13.13369 -13.00780 -12.93428 -12.77979 -12.51056 -12.16086 -11.99621 -11.73165 -11.43876 -10.62027 -10.59118 -10.50643 -10.34248 -10.30879 -9.88323 -8.59197 -8.55722 -6.60789 -0.19503 0.15423 0.69956 1.18574 1.24979 1.41451 1.56834 1.61104 2.17737 2.42792 2.48722 2.82485 3.32374 3.34339 3.42913 3.64851 4.05708 4.09692 4.14209 4.20557 4.43197 4.53775 4.59963 4.63987 4.67078 4.80630 4.82488 4.85893 4.93421 5.09549 5.22057 5.29934 5.30234 5.54145 5.74820 6.00988 6.19951 6.74051 6.89962 7.00072 8.39541 8.61594 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.040575 B = 0.003124 C = 0.003077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.911989 B = 8959.345319 C = 9098.120040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.118 3.882 3 C -0.162 4.162 4 C -0.033 4.033 5 C -0.052 4.052 6 S 0.008 5.992 7 C 0.051 3.949 8 N -0.329 5.329 9 N -0.389 5.389 10 C 0.318 3.682 11 C -0.472 4.472 12 H 0.104 0.896 13 C 0.029 3.971 14 N -0.788 5.788 15 Si 1.007 2.993 16 H -0.253 1.253 17 H -0.272 1.272 18 H -0.253 1.253 19 N -0.522 5.522 20 C 0.093 3.907 21 C -0.166 4.166 22 C 0.102 3.898 23 N -0.504 5.504 24 H 0.088 0.912 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.147 0.853 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.285 0.715 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.151 0.849 35 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.695 -12.507 -4.802 15.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.019 4.019 3 C -0.183 4.183 4 C -0.043 4.043 5 C -0.201 4.201 6 S 0.236 5.764 7 C -0.323 4.323 8 N -0.173 5.173 9 N -0.236 5.236 10 C 0.072 3.928 11 C -0.512 4.512 12 H 0.122 0.878 13 C -0.192 4.192 14 N -0.413 5.413 15 Si 0.826 3.174 16 H -0.177 1.177 17 H -0.197 1.197 18 H -0.177 1.177 19 N -0.224 5.224 20 C -0.050 4.050 21 C -0.188 4.188 22 C -0.054 4.054 23 N -0.215 5.215 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.165 0.835 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.168 0.832 35 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -9.343 -13.568 -4.090 16.974 hybrid contribution 1.437 2.125 -0.126 2.568 sum -7.906 -11.443 -4.217 14.534 Atomic orbital electron populations 1.20793 0.86676 1.04370 1.04038 1.21730 0.98512 0.87659 0.94016 1.22081 0.93671 1.00529 1.02067 1.19692 0.94019 0.93266 0.97308 1.22222 1.03770 0.97606 0.96454 1.84406 1.65932 1.16094 1.09931 1.26424 1.13203 1.03320 0.89330 1.74399 1.14480 1.07479 1.20968 1.75315 1.23890 1.10230 1.14132 1.22038 0.93616 0.89748 0.87386 1.18616 1.33030 1.03928 0.95631 0.87816 1.26997 0.95542 1.02005 0.94663 1.70149 1.32202 1.33324 1.05581 0.84898 0.78578 0.75493 0.78475 1.17738 1.19654 1.17718 1.46377 1.47705 1.20505 1.07784 1.21857 1.03808 1.03500 0.75816 1.22284 1.02679 0.92289 1.01521 1.23169 0.89039 0.99237 0.93984 1.67584 1.10777 1.29846 1.13298 0.89315 0.89183 0.90174 0.83535 0.88782 0.88639 0.90485 0.90754 0.89208 0.89158 0.83169 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.52 10.17 71.24 0.72 -0.79 16 2 C 0.12 2.56 6.78 42.55 0.29 2.85 16 3 C -0.16 -3.74 9.45 22.36 0.21 -3.53 16 4 C -0.03 -0.84 5.17 -19.67 -0.10 -0.94 16 5 C -0.05 -1.62 5.40 71.24 0.38 -1.23 16 6 S 0.01 0.28 21.77 -56.49 -1.23 -0.95 16 7 C 0.05 2.43 8.09 179.18 1.45 3.88 16 8 N -0.33 -18.49 11.62 -56.17 -0.65 -19.15 16 9 N -0.39 -24.29 10.48 -55.01 -0.58 -24.87 16 10 C 0.32 18.15 7.53 133.23 1.00 19.16 16 11 C -0.47 -25.12 9.04 23.09 0.21 -24.91 16 12 H 0.10 4.86 7.31 -2.91 -0.02 4.84 16 13 C 0.03 1.48 5.50 85.29 0.47 1.95 16 14 N -0.79 -44.54 11.94 21.86 0.26 -44.28 16 15 Si 1.01 37.39 29.56 68.60 2.03 39.42 16 16 H -0.25 -8.87 7.11 99.48 0.71 -8.16 16 17 H -0.27 -9.80 7.11 99.48 0.71 -9.09 16 18 H -0.25 -8.85 7.11 99.48 0.71 -8.15 16 19 N -0.52 -25.11 3.26 -543.62 -1.77 -26.88 16 20 C 0.09 3.21 10.87 127.77 1.39 4.60 16 21 C -0.17 -3.67 9.82 22.36 0.22 -3.45 16 22 C 0.10 2.07 11.18 84.67 0.95 3.02 16 23 N -0.50 -11.71 10.27 -183.89 -1.89 -13.60 16 24 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 25 H 0.09 1.08 8.08 -2.39 -0.02 1.06 16 26 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 28 H 0.09 3.12 8.10 -2.40 -0.02 3.10 16 29 H 0.10 3.15 8.10 -2.39 -0.02 3.13 16 30 H 0.28 14.56 8.30 -92.71 -0.77 13.79 16 31 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.09 2.89 7.54 -2.39 -0.02 2.87 16 33 H 0.09 2.66 7.85 -2.38 -0.02 2.64 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.19 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -75.30 323.09 4.47 -70.83 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 1.11 Total: 18.88 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 7.19 Total: 0.60 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -4.63 Total: -128.78 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 16 Polarization: 0.28 SS G_CDS: -1.23 Total: -0.95 kcal Total: -75.30 4.47 -70.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598710207.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.891 kcal (2) G-P(sol) polarization free energy of solvation -75.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds