Wall clock time and date at job start Tue Mar 31 2020 07:09:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38232 * 120.42193 * 2 1 4 4 N 1.31849 * 120.76432 * 180.27068 * 3 2 1 5 5 C 1.31886 * 121.72818 * 359.73246 * 4 3 2 6 6 C 1.38190 * 120.76391 * 359.97438 * 5 4 3 7 7 C 1.38634 * 120.42135 * 179.73152 * 2 1 3 8 8 C 1.50705 * 120.78594 * 0.02562 * 7 2 1 9 9 S 1.80995 * 109.46705 * 269.71767 * 8 7 2 10 10 C 1.76205 * 99.99991 * 180.02562 * 9 8 7 11 11 N 1.32393 * 126.25643 * 0.02562 * 10 9 8 12 12 N 1.28514 * 110.20061 * 179.97438 * 11 10 9 13 13 C 1.33092 * 109.74691 * 0.02562 * 12 11 10 14 14 C 1.39783 * 126.56054 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99560 * 180.02562 * 14 13 12 16 16 C 1.40081 * 120.00220 * 0.02562 * 14 13 12 17 17 N 1.30811 * 119.99623 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47207 * 89.99814 * 18 16 14 20 20 H 1.48502 * 109.47016 * 209.99633 * 18 16 14 21 21 H 1.48495 * 109.47201 * 329.99526 * 18 16 14 22 22 N 1.36674 * 126.26068 * 179.97438 * 10 9 8 23 23 C 1.46496 * 127.14869 * 0.02562 * 22 10 9 24 24 H 1.08996 * 109.47457 * 270.27371 * 1 2 3 25 25 H 1.09003 * 109.47221 * 30.26959 * 1 2 3 26 26 H 1.09002 * 109.47164 * 150.26621 * 1 2 3 27 27 H 1.07998 * 119.61261 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.61780 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.41469 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.46659 * 149.72037 * 8 7 2 31 31 H 1.09001 * 109.47127 * 29.71624 * 8 7 2 32 32 H 0.97002 * 119.99556 * 179.97438 * 17 16 14 33 33 H 1.09001 * 109.47442 * 270.04566 * 23 22 10 34 34 H 1.08998 * 109.47226 * 30.05058 * 23 22 10 35 35 H 1.09007 * 109.46812 * 150.04918 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.1999 -0.0054 5 6 4.2256 0.0823 -0.0056 6 6 3.5947 -1.1472 0.0002 7 6 2.2089 -1.1955 0.0056 8 6 1.4831 -2.5162 0.0112 9 16 1.1992 -3.0412 1.7199 10 6 0.3617 -4.5654 1.4366 11 7 0.0704 -5.0912 0.2570 12 7 -0.5431 -6.2101 0.4092 13 6 -0.6847 -6.4725 1.7063 14 6 -1.3003 -7.5956 2.2662 15 1 -1.3568 -7.7015 3.3396 16 6 -1.8439 -8.5837 1.4353 17 7 -1.7758 -8.4551 0.1353 18 14 -2.6672 -10.0842 2.1837 19 1 -4.1125 -9.8078 2.3834 20 1 -2.5066 -11.2441 1.2704 21 1 -2.0370 -10.3936 3.4922 22 7 -0.1053 -5.4214 2.3943 23 6 -0.0122 -5.2590 3.8472 24 1 -0.3634 0.0049 1.0276 25 1 -0.3634 0.8876 -0.5180 26 1 -0.3633 -0.8924 -0.5097 27 1 1.6675 2.1276 0.0004 28 1 5.3046 0.1285 -0.0097 29 1 4.1737 -2.0588 0.0004 30 1 2.0860 -3.2642 -0.5034 31 1 0.5261 -2.4070 -0.4991 32 1 -2.1519 -9.1396 -0.4401 33 1 0.9123 -5.7123 4.2051 34 1 -0.0162 -4.1977 4.0953 35 1 -0.8635 -5.7465 4.3225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600526782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:02 Heat of formation + Delta-G solvation = 95.284905 kcal Electronic energy + Delta-G solvation = -19621.362318 eV Core-core repulsion = 16553.436316 eV Total energy + Delta-G solvation = -3067.926002 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.56241 -40.34040 -34.59272 -33.74106 -33.35972 -32.44802 -29.42878 -28.34717 -27.06232 -26.49633 -25.53102 -22.83291 -21.66462 -20.87815 -20.42888 -17.43830 -16.80129 -16.75824 -15.90368 -15.51820 -15.13804 -14.89074 -14.77972 -14.29473 -13.58863 -13.54909 -13.37271 -13.18037 -12.75188 -12.61359 -12.37301 -12.27225 -12.03636 -11.50007 -11.46198 -11.33261 -10.98699 -10.62678 -10.40580 -9.78653 -9.66684 -9.53649 -9.41988 -8.95466 -8.76165 -8.48894 -8.43736 -6.91548 -6.69506 -4.62742 0.93184 1.05802 2.17651 2.72551 2.87926 3.03492 3.07006 3.30795 3.77291 3.83675 4.18609 4.37127 4.37546 4.50571 4.65839 4.85754 4.90626 5.27545 5.36182 5.37646 5.50048 5.54807 5.59678 5.68684 5.84018 5.89167 5.91578 5.99848 6.13108 6.33461 6.64005 6.71012 6.84033 7.19261 7.43167 7.83092 7.88741 8.12886 8.65347 8.80447 10.22952 10.57722 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.039177 B = 0.003381 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.528629 B = 8279.115989 C = 8416.908117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 C 0.095 3.905 4 N -0.484 5.484 5 C 0.088 3.912 6 C -0.151 4.151 7 C -0.028 4.028 8 C -0.060 4.060 9 S -0.038 6.038 10 C 0.041 3.959 11 N -0.285 5.285 12 N -0.333 5.333 13 C 0.347 3.653 14 C -0.447 4.447 15 H 0.084 0.916 16 C 0.078 3.922 17 N -0.736 5.736 18 Si 0.921 3.079 19 H -0.268 1.268 20 H -0.275 1.275 21 H -0.262 1.262 22 N -0.515 5.515 23 C 0.101 3.899 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.155 0.845 28 H 0.155 0.845 29 H 0.138 0.862 30 H 0.103 0.897 31 H 0.107 0.893 32 H 0.280 0.720 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.251 11.881 2.962 13.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.122 4.122 3 C -0.062 4.062 4 N -0.193 5.193 5 C -0.069 4.069 6 C -0.172 4.172 7 C -0.037 4.037 8 C -0.208 4.208 9 S 0.191 5.809 10 C -0.330 4.330 11 N -0.131 5.131 12 N -0.180 5.180 13 C 0.103 3.897 14 C -0.487 4.487 15 H 0.102 0.898 16 C -0.148 4.148 17 N -0.360 5.360 18 Si 0.745 3.255 19 H -0.193 1.193 20 H -0.200 1.200 21 H -0.186 1.186 22 N -0.217 5.217 23 C -0.044 4.044 24 H 0.098 0.902 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.172 0.828 28 H 0.173 0.827 29 H 0.156 0.844 30 H 0.121 0.879 31 H 0.125 0.875 32 H 0.091 0.909 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.855 12.953 2.232 14.389 hybrid contribution -1.072 -2.182 0.700 2.530 sum 4.783 10.771 2.932 12.144 Atomic orbital electron populations 1.20830 0.89923 1.03312 1.03341 1.20851 0.97888 0.93324 1.00133 1.22619 0.89879 0.97220 0.96526 1.67631 1.08347 1.31500 1.11832 1.22682 1.00266 0.87504 0.96405 1.22106 0.94319 1.00050 1.00767 1.19690 0.93625 0.93655 0.96760 1.22268 1.04712 0.95847 0.98001 1.84593 1.71853 1.16121 1.08363 1.25332 1.16706 1.01134 0.89856 1.74530 1.12940 1.06449 1.19218 1.75458 1.22960 1.07580 1.12042 1.21625 0.92783 0.87982 0.87300 1.18121 1.34901 1.01265 0.94430 0.89756 1.25801 0.95074 0.99313 0.94565 1.70007 1.30534 1.31733 1.03705 0.86110 0.79806 0.79853 0.79740 1.19341 1.19951 1.18626 1.46025 1.50736 1.19321 1.05653 1.21496 1.02318 1.01511 0.79038 0.90151 0.91210 0.90610 0.82805 0.82737 0.84389 0.87869 0.87510 0.90927 0.92531 0.91581 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.24 9.66 36.00 0.35 -0.89 16 2 C -0.12 -1.42 5.90 -104.48 -0.62 -2.04 16 3 C 0.09 1.09 10.86 -17.55 -0.19 0.89 16 4 N -0.48 -6.08 10.36 -13.25 -0.14 -6.21 16 5 C 0.09 0.99 11.18 -17.55 -0.20 0.79 16 6 C -0.15 -1.79 9.82 -39.44 -0.39 -2.18 16 7 C -0.03 -0.37 5.17 -104.32 -0.54 -0.91 16 8 C -0.06 -0.94 5.02 36.01 0.18 -0.76 16 9 S -0.04 -0.67 21.77 -107.50 -2.34 -3.01 16 10 C 0.04 0.97 8.09 -87.27 -0.71 0.27 16 11 N -0.29 -7.67 11.62 30.90 0.36 -7.31 16 12 N -0.33 -9.88 10.48 31.26 0.33 -9.55 16 13 C 0.35 9.59 7.53 -154.82 -1.17 8.43 16 14 C -0.45 -11.70 9.05 -38.31 -0.35 -12.05 16 15 H 0.08 2.00 7.30 -52.48 -0.38 1.61 16 16 C 0.08 1.97 5.50 -17.30 -0.10 1.88 16 17 N -0.74 -19.99 11.94 55.56 0.66 -19.33 16 18 Si 0.92 18.26 29.56 -169.99 -5.03 13.24 16 19 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 22 N -0.52 -12.28 3.26 -123.18 -0.40 -12.68 16 23 C 0.10 1.83 10.88 59.84 0.65 2.48 16 24 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 26 H 0.08 0.90 6.07 -51.93 -0.32 0.58 16 27 H 0.15 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.16 1.30 8.06 -52.49 -0.42 0.87 16 29 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 30 H 0.10 1.68 8.10 -51.92 -0.42 1.26 16 31 H 0.11 1.73 6.08 -51.92 -0.32 1.41 16 32 H 0.28 6.85 8.30 -40.82 -0.34 6.51 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 1.05 7.85 -51.93 -0.41 0.64 16 35 H 0.08 1.33 7.52 -51.93 -0.39 0.94 16 LS Contribution 318.72 15.07 4.80 4.80 Total: -1.00 -32.98 318.72 -8.72 -41.69 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -3.90 Total: 2.45 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -3.06 Total: -4.09 kcal Atomic # 7 Polarization: -55.90 SS G_CDS: 0.81 Total: -55.08 kcal Atomic # 14 Polarization: 18.26 SS G_CDS: -5.03 Total: 13.24 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -2.34 Total: -3.01 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.98 -8.72 -41.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600526782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.979 kcal (2) G-P(sol) polarization free energy of solvation -32.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds