Wall clock time and date at job start Tue Mar 31 2020 07:09:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38232 * 120.42193 * 2 1 4 4 N 1.31849 * 120.76432 * 180.27068 * 3 2 1 5 5 C 1.31886 * 121.72818 * 359.73246 * 4 3 2 6 6 C 1.38190 * 120.76391 * 359.97438 * 5 4 3 7 7 C 1.38634 * 120.42135 * 179.73152 * 2 1 3 8 8 C 1.50705 * 120.78594 * 0.02562 * 7 2 1 9 9 S 1.80995 * 109.46705 * 269.71767 * 8 7 2 10 10 C 1.76205 * 99.99991 * 180.02562 * 9 8 7 11 11 N 1.32393 * 126.25643 * 0.02562 * 10 9 8 12 12 N 1.28514 * 110.20061 * 179.97438 * 11 10 9 13 13 C 1.33092 * 109.74691 * 0.02562 * 12 11 10 14 14 C 1.39783 * 126.56054 * 179.97438 * 13 12 11 15 15 H 1.08005 * 119.99560 * 180.02562 * 14 13 12 16 16 C 1.40081 * 120.00220 * 0.02562 * 14 13 12 17 17 N 1.30811 * 119.99623 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99903 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47207 * 89.99814 * 18 16 14 20 20 H 1.48502 * 109.47016 * 209.99633 * 18 16 14 21 21 H 1.48495 * 109.47201 * 329.99526 * 18 16 14 22 22 N 1.36674 * 126.26068 * 179.97438 * 10 9 8 23 23 C 1.46496 * 127.14869 * 0.02562 * 22 10 9 24 24 H 1.08996 * 109.47457 * 270.27371 * 1 2 3 25 25 H 1.09003 * 109.47221 * 30.26959 * 1 2 3 26 26 H 1.09002 * 109.47164 * 150.26621 * 1 2 3 27 27 H 1.07998 * 119.61261 * 0.02562 * 3 2 1 28 28 H 1.08000 * 119.61780 * 180.02562 * 5 4 3 29 29 H 1.07998 * 120.41469 * 180.02562 * 6 5 4 30 30 H 1.08996 * 109.46659 * 149.72037 * 8 7 2 31 31 H 1.09001 * 109.47127 * 29.71624 * 8 7 2 32 32 H 0.97002 * 119.99556 * 179.97438 * 17 16 14 33 33 H 1.09001 * 109.47442 * 270.04566 * 23 22 10 34 34 H 1.08998 * 109.47226 * 30.05058 * 23 22 10 35 35 H 1.09007 * 109.46812 * 150.04918 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2069 1.1920 0.0000 4 7 3.5253 1.1999 -0.0054 5 6 4.2256 0.0823 -0.0056 6 6 3.5947 -1.1472 0.0002 7 6 2.2089 -1.1955 0.0056 8 6 1.4831 -2.5162 0.0112 9 16 1.1992 -3.0412 1.7199 10 6 0.3617 -4.5654 1.4366 11 7 0.0704 -5.0912 0.2570 12 7 -0.5431 -6.2101 0.4092 13 6 -0.6847 -6.4725 1.7063 14 6 -1.3003 -7.5956 2.2662 15 1 -1.3568 -7.7015 3.3396 16 6 -1.8439 -8.5837 1.4353 17 7 -1.7758 -8.4551 0.1353 18 14 -2.6672 -10.0842 2.1837 19 1 -4.1125 -9.8078 2.3834 20 1 -2.5066 -11.2441 1.2704 21 1 -2.0370 -10.3936 3.4922 22 7 -0.1053 -5.4214 2.3943 23 6 -0.0122 -5.2590 3.8472 24 1 -0.3634 0.0049 1.0276 25 1 -0.3634 0.8876 -0.5180 26 1 -0.3633 -0.8924 -0.5097 27 1 1.6675 2.1276 0.0004 28 1 5.3046 0.1285 -0.0097 29 1 4.1737 -2.0588 0.0004 30 1 2.0860 -3.2642 -0.5034 31 1 0.5261 -2.4070 -0.4991 32 1 -2.1519 -9.1396 -0.4401 33 1 0.9123 -5.7123 4.2051 34 1 -0.0162 -4.1977 4.0953 35 1 -0.8635 -5.7465 4.3225 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600526782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:01 Heat of formation + Delta-G solvation = 75.842859 kcal Electronic energy + Delta-G solvation = -19622.205389 eV Core-core repulsion = 16553.436316 eV Total energy + Delta-G solvation = -3068.769072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.47193 -41.26978 -35.67869 -35.57020 -35.12702 -33.37420 -31.35100 -29.47918 -28.28699 -27.90970 -27.35113 -23.79997 -22.85165 -22.71916 -22.09514 -19.28359 -18.14535 -17.74583 -17.33803 -17.05280 -16.56861 -16.33992 -16.01153 -15.80599 -15.09959 -14.71662 -14.59701 -14.18074 -13.94843 -13.83308 -13.78502 -13.60367 -13.15613 -13.02593 -12.92875 -12.78131 -12.40793 -12.14136 -11.96413 -11.71694 -11.45191 -10.60799 -10.54090 -10.46561 -10.31653 -10.29800 -9.84238 -8.57987 -8.55558 -6.60180 -0.18829 0.16852 0.71171 1.18367 1.26511 1.41707 1.57931 1.61015 2.17887 2.43395 2.49175 2.85578 3.32831 3.38185 3.59620 3.65876 3.94246 3.98937 4.06020 4.28504 4.43295 4.48526 4.58799 4.60227 4.66868 4.80398 4.86010 4.88397 4.94257 5.02260 5.23169 5.30797 5.38554 5.54726 5.74977 6.01702 6.20671 6.74599 6.90516 6.99107 8.39934 8.62411 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.039177 B = 0.003381 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.528629 B = 8279.115989 C = 8416.908117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.121 4.121 3 C 0.095 3.905 4 N -0.499 5.499 5 C 0.088 3.912 6 C -0.154 4.154 7 C -0.045 4.045 8 C -0.054 4.054 9 S 0.010 5.990 10 C 0.052 3.948 11 N -0.329 5.329 12 N -0.388 5.388 13 C 0.318 3.682 14 C -0.472 4.472 15 H 0.103 0.897 16 C 0.029 3.971 17 N -0.788 5.788 18 Si 1.007 2.993 19 H -0.261 1.261 20 H -0.271 1.271 21 H -0.248 1.248 22 N -0.522 5.522 23 C 0.093 3.907 24 H 0.082 0.918 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.149 0.851 30 H 0.091 0.909 31 H 0.097 0.903 32 H 0.284 0.716 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.759 13.037 4.793 15.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.125 4.125 3 C -0.062 4.062 4 N -0.208 5.208 5 C -0.068 4.068 6 C -0.176 4.176 7 C -0.055 4.055 8 C -0.202 4.202 9 S 0.238 5.762 10 C -0.322 4.322 11 N -0.174 5.174 12 N -0.235 5.235 13 C 0.072 3.928 14 C -0.512 4.512 15 H 0.121 0.879 16 C -0.192 4.192 17 N -0.413 5.413 18 Si 0.825 3.175 19 H -0.185 1.185 20 H -0.196 1.196 21 H -0.171 1.171 22 N -0.223 5.223 23 C -0.050 4.050 24 H 0.101 0.899 25 H 0.113 0.887 26 H 0.077 0.923 27 H 0.199 0.801 28 H 0.201 0.799 29 H 0.167 0.833 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.108 0.892 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.374 14.126 4.079 16.026 hybrid contribution -1.095 -2.293 0.137 2.545 sum 5.279 11.833 4.217 13.626 Atomic orbital electron populations 1.20853 0.89167 1.03735 1.03573 1.21017 0.98536 0.93162 0.99792 1.23044 0.89745 0.97961 0.95492 1.67710 1.08919 1.32055 1.12108 1.23130 1.01616 0.86795 0.95277 1.22290 0.93831 1.01045 1.00384 1.19611 0.94297 0.92695 0.98910 1.22238 1.04447 0.97032 0.96497 1.84385 1.70055 1.11905 1.09863 1.26430 1.14055 1.02426 0.89248 1.74407 1.15079 1.06795 1.21091 1.75316 1.24962 1.09205 1.13989 1.22038 0.93847 0.89471 0.87477 1.18640 1.35436 1.01541 0.95591 0.87859 1.26984 0.95003 1.02496 0.94695 1.70154 1.32078 1.33329 1.05696 0.84849 0.78589 0.74926 0.79091 1.18527 1.19608 1.17085 1.46373 1.49830 1.18374 1.07747 1.21855 1.03716 1.03523 0.75886 0.89949 0.88657 0.92340 0.80120 0.79947 0.83304 0.89025 0.88486 0.90519 0.90803 0.89153 0.89215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 9.66 71.23 0.69 -1.62 16 2 C -0.12 -2.71 5.90 -19.77 -0.12 -2.83 16 3 C 0.09 1.92 10.86 84.69 0.92 2.84 16 4 N -0.50 -11.25 10.36 -195.84 -2.03 -13.28 16 5 C 0.09 1.76 11.18 84.67 0.95 2.71 16 6 C -0.15 -3.40 9.82 22.36 0.22 -3.18 16 7 C -0.05 -1.15 5.17 -19.67 -0.10 -1.25 16 8 C -0.05 -1.68 5.02 71.24 0.36 -1.32 16 9 S 0.01 0.33 21.77 -56.49 -1.23 -0.90 16 10 C 0.05 2.47 8.09 179.18 1.45 3.92 16 11 N -0.33 -18.43 11.62 -56.17 -0.65 -19.08 16 12 N -0.39 -24.13 10.48 -55.02 -0.58 -24.71 16 13 C 0.32 18.07 7.53 133.24 1.00 19.07 16 14 C -0.47 -25.07 9.05 23.09 0.21 -24.86 16 15 H 0.10 4.84 7.30 -2.91 -0.02 4.82 16 16 C 0.03 1.48 5.50 85.29 0.47 1.95 16 17 N -0.79 -44.44 11.94 21.85 0.26 -44.18 16 18 Si 1.01 37.37 29.56 68.60 2.03 39.39 16 19 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 20 H -0.27 -9.80 7.11 99.48 0.71 -9.10 16 21 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 22 N -0.52 -24.95 3.26 -543.62 -1.77 -26.72 16 23 C 0.09 3.20 10.88 127.77 1.39 4.59 16 24 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 25 H 0.09 1.37 8.10 -2.39 -0.02 1.35 16 26 H 0.06 1.37 6.07 -2.39 -0.01 1.36 16 27 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 28 H 0.18 2.50 8.06 -2.91 -0.02 2.48 16 29 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 30 H 0.09 3.06 8.10 -2.40 -0.02 3.04 16 31 H 0.10 3.23 6.08 -2.39 -0.01 3.22 16 32 H 0.28 14.48 8.30 -92.71 -0.77 13.71 16 33 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.64 7.85 -2.39 -0.02 2.62 16 35 H 0.09 2.88 7.52 -2.38 -0.02 2.86 16 Total: -1.00 -74.78 318.72 4.58 -70.20 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 1.12 Total: 19.23 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 7.43 Total: 0.04 kcal Atomic # 7 Polarization: -123.20 SS G_CDS: -4.77 Total: -127.97 kcal Atomic # 14 Polarization: 37.37 SS G_CDS: 2.03 Total: 39.39 kcal Atomic # 16 Polarization: 0.33 SS G_CDS: -1.23 Total: -0.90 kcal Total: -74.78 4.58 -70.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600526782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.046 kcal (2) G-P(sol) polarization free energy of solvation -74.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds