Wall clock time and date at job start Tue Mar 31 2020 07:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46762 * 2 1 4 4 C 1.50702 * 109.46814 * 240.00742 * 2 1 3 5 5 H 1.08007 * 119.99427 * 239.99218 * 4 2 1 6 6 C 1.37873 * 120.00585 * 59.99319 * 4 2 1 7 7 N 1.31517 * 119.99767 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00159 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46830 * 90.00479 * 8 6 4 10 10 H 1.48502 * 109.47134 * 210.00062 * 8 6 4 11 11 H 1.48491 * 109.47250 * 330.00268 * 8 6 4 12 12 N 1.46495 * 109.47580 * 120.00289 * 2 1 3 13 13 C 1.46501 * 120.00003 * 59.99895 * 12 2 1 14 14 C 1.38556 * 119.99690 * 239.99978 * 12 2 1 15 15 C 1.39779 * 120.47401 * 184.99568 * 14 12 2 16 16 C 1.38220 * 118.52539 * 180.02562 * 15 14 12 17 17 N 1.32380 * 119.30832 * 0.02562 * 16 15 14 18 18 C 1.32711 * 120.92333 * 0.02562 * 17 16 15 19 19 C 1.47821 * 119.19546 * 179.97438 * 18 17 16 20 20 N 1.30235 * 125.46928 * 359.97438 * 19 18 17 21 21 C 1.31044 * 117.11387 * 179.97438 * 20 19 18 22 22 C 1.33982 * 115.83207 * 0.02562 * 21 20 19 23 23 S 1.76183 * 125.46386 * 179.97438 * 19 18 17 24 24 N 1.32744 * 121.60338 * 0.24764 * 18 17 16 25 25 H 1.09000 * 109.46833 * 299.99331 * 1 2 3 26 26 H 1.08994 * 109.47686 * 59.99627 * 1 2 3 27 27 H 1.08999 * 109.46762 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00146 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47204 * 269.99891 * 13 12 2 30 30 H 1.08994 * 109.46707 * 30.00329 * 13 12 2 31 31 H 1.09001 * 109.46930 * 150.00039 * 13 12 2 32 32 H 1.07999 * 120.74308 * 0.02849 * 15 14 12 33 33 H 1.08001 * 120.34153 * 180.02562 * 16 15 14 34 34 H 1.08002 * 122.07913 * 180.02562 * 21 20 19 35 35 H 1.07998 * 125.91570 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3223 -1.1193 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4870 -0.1399 -5.1121 11 1 3.6307 -1.7563 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.8150 -0.0172 2.1080 15 6 3.3720 -0.6930 3.1975 16 6 4.1599 0.0183 4.0828 17 7 4.3631 1.3100 3.8758 18 6 3.8212 1.9272 2.8334 19 6 4.0729 3.3709 2.6394 20 7 4.7982 4.1227 3.4171 21 6 4.9122 5.3864 3.0892 22 6 4.2618 5.7627 1.9799 23 16 3.4397 4.3504 1.3190 24 7 3.0544 1.2809 1.9638 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7086 1.1615 -3.4843 29 1 0.7378 -2.1445 1.9993 30 1 1.5297 -2.5968 0.4707 31 1 2.4631 -2.5819 1.9861 32 1 3.1907 -1.7475 3.3445 33 1 4.6051 -0.4746 4.9344 34 1 5.4942 6.0811 3.6766 35 1 4.2447 6.7586 1.5627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601124192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:48 Heat of formation + Delta-G solvation = 114.331103 kcal Electronic energy + Delta-G solvation = -20304.644191 eV Core-core repulsion = 17237.544094 eV Total energy + Delta-G solvation = -3067.100097 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 3.36 seconds Orbital eigenvalues (eV) -40.47607 -39.12921 -36.89310 -33.39250 -32.88792 -31.53772 -29.87415 -28.78964 -26.55033 -25.54055 -25.28925 -23.43742 -22.48193 -20.43058 -19.12758 -18.37567 -16.90547 -16.75844 -16.15715 -15.56368 -14.96754 -14.89340 -14.61987 -14.15336 -13.99214 -13.70100 -13.25998 -13.15203 -12.92488 -12.55465 -11.73338 -11.53703 -11.22176 -11.13424 -10.99465 -10.81537 -10.59767 -10.33145 -10.21223 -10.08929 -9.95093 -9.50998 -9.22539 -9.11057 -8.69354 -8.46064 -8.43867 -7.14439 -6.14004 -4.22990 0.35953 1.46634 1.65133 1.94068 1.96253 3.05752 3.21280 3.28905 3.30598 3.39648 3.99763 4.32458 4.41945 4.66714 5.01638 5.16619 5.20875 5.24554 5.49331 5.54190 5.57488 5.76269 5.93990 6.00660 6.18776 6.27410 6.50842 6.72410 6.78880 6.97589 7.20242 7.48035 7.62918 7.75595 7.85006 8.02286 8.13978 8.28644 8.67506 8.83457 9.43164 10.90286 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.005661 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.296198 B = 4945.287022 C = 6217.220914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.261 3.739 3 H 0.071 0.929 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.885 5.885 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.566 5.566 13 C 0.094 3.906 14 C 0.450 3.550 15 C -0.302 4.302 16 C 0.170 3.830 17 N -0.540 5.540 18 C 0.417 3.583 19 C 0.117 3.883 20 N -0.434 5.434 21 C 0.030 3.970 22 C -0.268 4.268 23 S 0.188 5.812 24 N -0.555 5.555 25 H 0.011 0.989 26 H 0.095 0.905 27 H 0.029 0.971 28 H 0.264 0.736 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.174 0.826 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 2.825 9.202 10.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.089 0.911 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.200 1.200 12 N -0.272 5.272 13 C -0.050 4.050 14 C 0.204 3.796 15 C -0.332 4.332 16 C 0.008 3.992 17 N -0.262 5.262 18 C 0.146 3.854 19 C -0.159 4.159 20 N -0.150 5.150 21 C -0.124 4.124 22 C -0.408 4.408 23 S 0.442 5.558 24 N -0.281 5.281 25 H 0.030 0.970 26 H 0.113 0.887 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.158 0.842 33 H 0.180 0.820 34 H 0.191 0.809 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.796 3.298 8.301 9.360 hybrid contribution 0.612 -0.794 -0.357 1.064 sum 3.408 2.504 7.944 9.000 Atomic orbital electron populations 1.22105 0.98171 0.99420 1.00860 1.19099 0.90917 0.94579 0.79268 0.91098 1.21315 1.32050 1.13177 0.90255 0.92314 1.24858 0.94866 0.94938 0.98874 1.69870 1.36153 1.22412 1.23854 0.86510 0.79209 0.79361 0.82423 1.20577 1.21025 1.19973 1.47305 1.47748 1.10577 1.21607 1.21649 0.98913 0.81793 1.02653 1.18434 0.86741 0.87296 0.87118 1.22258 1.08239 1.02606 1.00103 1.22736 0.91185 0.88965 0.96304 1.68344 1.26025 1.10561 1.21238 1.19208 0.89453 0.89843 0.86858 1.24718 1.00599 0.95071 0.95493 1.66419 1.15654 1.04200 1.28678 1.21673 1.02304 0.91694 0.96778 1.27501 1.06396 1.04614 1.02337 1.85736 1.45427 0.98644 1.25996 1.67789 1.20777 1.08782 1.30769 0.97011 0.88696 0.95232 0.92606 0.93596 0.89609 0.92389 0.84165 0.82033 0.80924 0.80404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 8.97 37.16 0.33 -3.06 16 2 C 0.26 6.32 2.67 -69.08 -0.18 6.13 16 3 H 0.07 1.93 6.85 -51.93 -0.36 1.57 16 4 C -0.53 -13.71 7.99 -34.44 -0.28 -13.99 16 5 H 0.06 1.52 7.33 -52.48 -0.38 1.13 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.00 11.32 55.43 0.63 -23.37 16 8 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.57 -11.63 2.86 -175.24 -0.50 -12.13 16 13 C 0.09 1.52 9.30 59.85 0.56 2.08 16 14 C 0.45 9.01 7.39 -154.88 -1.14 7.86 16 15 C -0.30 -4.85 9.33 -39.01 -0.36 -5.22 16 16 C 0.17 2.63 11.28 -17.32 -0.20 2.43 16 17 N -0.54 -10.10 10.30 -11.31 -0.12 -10.22 16 18 C 0.42 8.37 7.59 -156.94 -1.19 7.18 16 19 C 0.12 2.16 7.47 -14.31 -0.11 2.06 16 20 N -0.43 -7.49 10.48 -11.36 -0.12 -7.61 16 21 C 0.03 0.40 11.25 -19.38 -0.22 0.18 16 22 C -0.27 -3.32 11.36 29.24 0.33 -2.98 16 23 S 0.19 3.05 23.19 -107.50 -2.49 0.55 16 24 N -0.55 -11.86 8.70 -10.46 -0.09 -11.95 16 25 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.09 2.41 6.07 -51.93 -0.32 2.09 16 27 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 28 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.09 1.47 7.02 -51.93 -0.36 1.11 16 31 H 0.06 0.78 6.04 -51.93 -0.31 0.47 16 32 H 0.14 1.81 6.15 -52.49 -0.32 1.49 16 33 H 0.16 1.80 8.06 -52.49 -0.42 1.37 16 34 H 0.17 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 313.51 15.07 4.72 4.72 Total: -1.00 -30.36 313.51 -9.24 -39.61 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -3.70 Total: 0.59 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: -2.55 Total: 4.35 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -0.20 Total: -65.27 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Atomic # 16 Polarization: 3.05 SS G_CDS: -2.49 Total: 0.55 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.36 -9.24 -39.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601124192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.937 kcal (2) G-P(sol) polarization free energy of solvation -30.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.36 seconds