Wall clock time and date at job start Tue Mar 31 2020 07:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.46762 * 2 1 4 4 C 1.50702 * 109.46814 * 240.00742 * 2 1 3 5 5 H 1.08007 * 119.99427 * 239.99218 * 4 2 1 6 6 C 1.37873 * 120.00585 * 59.99319 * 4 2 1 7 7 N 1.31517 * 119.99767 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00159 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46830 * 90.00479 * 8 6 4 10 10 H 1.48502 * 109.47134 * 210.00062 * 8 6 4 11 11 H 1.48491 * 109.47250 * 330.00268 * 8 6 4 12 12 N 1.46495 * 109.47580 * 120.00289 * 2 1 3 13 13 C 1.46501 * 120.00003 * 59.99895 * 12 2 1 14 14 C 1.38556 * 119.99690 * 239.99978 * 12 2 1 15 15 C 1.39779 * 120.47401 * 184.99568 * 14 12 2 16 16 C 1.38220 * 118.52539 * 180.02562 * 15 14 12 17 17 N 1.32380 * 119.30832 * 0.02562 * 16 15 14 18 18 C 1.32711 * 120.92333 * 0.02562 * 17 16 15 19 19 C 1.47821 * 119.19546 * 179.97438 * 18 17 16 20 20 N 1.30235 * 125.46928 * 359.97438 * 19 18 17 21 21 C 1.31044 * 117.11387 * 179.97438 * 20 19 18 22 22 C 1.33982 * 115.83207 * 0.02562 * 21 20 19 23 23 S 1.76183 * 125.46386 * 179.97438 * 19 18 17 24 24 N 1.32744 * 121.60338 * 0.24764 * 18 17 16 25 25 H 1.09000 * 109.46833 * 299.99331 * 1 2 3 26 26 H 1.08994 * 109.47686 * 59.99627 * 1 2 3 27 27 H 1.08999 * 109.46762 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00146 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47204 * 269.99891 * 13 12 2 30 30 H 1.08994 * 109.46707 * 30.00329 * 13 12 2 31 31 H 1.09001 * 109.46930 * 150.00039 * 13 12 2 32 32 H 1.07999 * 120.74308 * 0.02849 * 15 14 12 33 33 H 1.08001 * 120.34153 * 180.02562 * 16 15 14 34 34 H 1.08002 * 122.07913 * 180.02562 * 21 20 19 35 35 H 1.07998 * 125.91570 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3223 -1.1193 -4.0081 9 1 1.3446 -2.1613 -4.4125 10 1 2.4870 -0.1399 -5.1121 11 1 3.6307 -1.7563 -3.7122 12 7 2.0184 -0.6906 1.1961 13 6 1.6646 -2.0932 1.4279 14 6 2.8150 -0.0172 2.1080 15 6 3.3720 -0.6930 3.1975 16 6 4.1599 0.0183 4.0828 17 7 4.3631 1.3100 3.8758 18 6 3.8212 1.9272 2.8334 19 6 4.0729 3.3709 2.6394 20 7 4.7982 4.1227 3.4171 21 6 4.9122 5.3864 3.0892 22 6 4.2618 5.7627 1.9799 23 16 3.4397 4.3504 1.3190 24 7 3.0544 1.2809 1.9638 25 1 -0.3633 0.5137 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7086 1.1615 -3.4843 29 1 0.7378 -2.1445 1.9993 30 1 1.5297 -2.5968 0.4707 31 1 2.4631 -2.5819 1.9861 32 1 3.1907 -1.7475 3.3445 33 1 4.6051 -0.4746 4.9344 34 1 5.4942 6.0811 3.6766 35 1 4.2447 6.7586 1.5627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601124192.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:40 Heat of formation + Delta-G solvation = 95.951436 kcal Electronic energy + Delta-G solvation = -20305.441193 eV Core-core repulsion = 17237.544094 eV Total energy + Delta-G solvation = -3067.897099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 17.46 seconds Orbital eigenvalues (eV) -41.84781 -40.32451 -38.44533 -35.20690 -34.24801 -33.04767 -31.36109 -30.20398 -27.92000 -27.27999 -26.80923 -24.84799 -23.82305 -22.03334 -20.43884 -19.62456 -18.53055 -18.24743 -17.76495 -16.78892 -16.63397 -16.34583 -15.96925 -15.41607 -15.34639 -15.25390 -14.58747 -14.53271 -14.25246 -14.06970 -13.50101 -13.07626 -12.90631 -12.72898 -12.60310 -12.36132 -12.25860 -12.13480 -11.89075 -11.53634 -11.26675 -11.02889 -10.76281 -10.53219 -10.40486 -10.04642 -9.67769 -8.65799 -8.10629 -6.28389 -0.89153 0.25406 0.41014 0.55724 0.82044 1.40413 1.42326 1.51106 1.89009 2.01532 2.40393 2.68200 3.03693 3.15188 3.44058 3.82108 3.93753 4.26400 4.31033 4.36114 4.50427 4.54842 4.70953 4.72853 4.77209 4.92218 5.01580 5.09594 5.16786 5.29524 5.54094 5.65089 5.80636 6.01534 6.17350 6.43581 6.64121 6.70081 6.83985 7.31850 7.42404 8.90612 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014935 B = 0.005661 C = 0.004503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1874.296198 B = 4945.287022 C = 6217.220914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H 0.031 0.969 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.958 3.042 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.581 5.581 13 C 0.092 3.908 14 C 0.422 3.578 15 C -0.287 4.287 16 C 0.172 3.828 17 N -0.554 5.554 18 C 0.400 3.600 19 C 0.082 3.918 20 N -0.446 5.446 21 C 0.017 3.983 22 C -0.226 4.226 23 S 0.138 5.862 24 N -0.589 5.589 25 H 0.015 0.985 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.211 0.789 34 H 0.214 0.786 35 H 0.223 0.777 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.448 2.410 10.444 11.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.168 3.832 3 H 0.049 0.951 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.783 3.217 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.289 5.289 13 C -0.050 4.050 14 C 0.177 3.823 15 C -0.317 4.317 16 C 0.011 3.989 17 N -0.276 5.276 18 C 0.130 3.870 19 C -0.193 4.193 20 N -0.162 5.162 21 C -0.136 4.136 22 C -0.366 4.366 23 S 0.391 5.609 24 N -0.317 5.317 25 H 0.034 0.966 26 H 0.087 0.913 27 H 0.059 0.941 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.195 0.805 33 H 0.228 0.772 34 H 0.230 0.770 35 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.953 2.865 9.587 10.759 hybrid contribution 0.332 -0.541 -0.637 0.900 sum 4.285 2.323 8.950 10.191 Atomic orbital electron populations 1.21889 0.97783 0.99669 0.99710 1.18623 0.91077 0.92886 0.80628 0.95103 1.21566 1.31802 1.13021 0.91265 0.92596 1.25604 0.95126 0.95598 1.01578 1.70002 1.37153 1.23596 1.24316 0.85567 0.78698 0.78367 0.79028 1.19512 1.21103 1.19950 1.47158 1.48796 1.11947 1.21023 1.21821 1.00892 0.79617 1.02664 1.18915 0.87478 0.87490 0.88386 1.22586 1.06767 1.04102 0.98230 1.23560 0.90282 0.87930 0.97146 1.68415 1.26152 1.12212 1.20859 1.19514 0.89628 0.90734 0.87108 1.24712 1.02642 0.95137 0.96771 1.66425 1.15232 1.05729 1.28816 1.22306 1.02793 0.90939 0.97545 1.27936 1.03309 1.04548 1.00808 1.85878 1.46918 1.01231 1.26904 1.67748 1.21855 1.10061 1.31986 0.96583 0.91285 0.94091 0.92668 0.92003 0.90958 0.89167 0.80536 0.77215 0.76960 0.76081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.27 13.48 2.67 44.25 0.12 13.60 16 3 H 0.03 1.79 6.85 -2.39 -0.02 1.77 16 4 C -0.54 -28.45 7.99 25.60 0.20 -28.25 16 5 H 0.06 2.92 7.33 -2.91 -0.02 2.89 16 6 C 0.02 1.12 5.30 84.65 0.45 1.57 16 7 N -0.91 -50.98 11.32 21.45 0.24 -50.74 16 8 Si 0.96 42.42 29.54 68.60 2.03 44.45 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 N -0.58 -23.97 2.86 -708.34 -2.02 -25.99 16 13 C 0.09 2.86 9.30 127.77 1.19 4.05 16 14 C 0.42 16.91 7.39 133.26 0.98 17.89 16 15 C -0.29 -8.63 9.33 22.64 0.21 -8.42 16 16 C 0.17 4.91 11.28 84.61 0.95 5.86 16 17 N -0.55 -20.41 10.30 -189.69 -1.95 -22.37 16 18 C 0.40 16.44 7.59 137.31 1.04 17.48 16 19 C 0.08 3.11 7.47 87.47 0.65 3.76 16 20 N -0.45 -15.15 10.48 -189.86 -1.99 -17.14 16 21 C 0.02 0.42 11.25 83.84 0.94 1.36 16 22 C -0.23 -5.11 11.36 66.85 0.76 -4.35 16 23 S 0.14 4.62 23.19 -56.49 -1.31 3.31 16 24 N -0.59 -26.12 8.70 -187.00 -1.63 -27.75 16 25 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 26 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 27 H 0.04 1.79 7.67 -2.39 -0.02 1.77 16 28 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 2.42 7.02 -2.39 -0.02 2.41 16 31 H 0.09 2.15 6.04 -2.39 -0.01 2.14 16 32 H 0.18 3.84 6.15 -2.91 -0.02 3.83 16 33 H 0.21 3.76 8.06 -2.91 -0.02 3.74 16 34 H 0.21 3.39 8.06 -2.91 -0.02 3.37 16 35 H 0.22 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -69.77 313.51 2.64 -67.13 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.12 Total: 10.16 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 8.15 Total: 18.94 kcal Atomic # 7 Polarization: -136.63 SS G_CDS: -7.35 Total: -143.98 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 4.62 SS G_CDS: -1.31 Total: 3.31 kcal Total: -69.77 2.64 -67.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601124192.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.084 kcal (2) G-P(sol) polarization free energy of solvation -69.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 17.46 seconds