Wall clock time and date at job start Tue Mar 31 2020 07:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46987 * 2 1 4 4 C 1.50693 * 109.47240 * 120.00517 * 2 1 3 5 5 H 1.07999 * 120.00751 * 119.99983 * 4 2 1 6 6 C 1.37886 * 119.99982 * 299.99551 * 4 2 1 7 7 N 1.31517 * 119.99462 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00177 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46890 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46698 * 120.00202 * 8 6 4 11 11 H 1.48500 * 109.47094 * 240.00597 * 8 6 4 12 12 N 1.46497 * 109.46793 * 240.00387 * 2 1 3 13 13 C 1.46500 * 120.00272 * 301.30781 * 12 2 1 14 14 C 1.38552 * 119.99986 * 121.31365 * 12 2 1 15 15 C 1.39777 * 120.47991 * 10.90936 * 14 12 2 16 16 C 1.38213 * 118.53053 * 179.97438 * 15 14 12 17 17 N 1.32380 * 119.30777 * 359.97438 * 16 15 14 18 18 C 1.32709 * 120.92418 * 0.02562 * 17 16 15 19 19 C 1.47829 * 119.19938 * 179.97438 * 18 17 16 20 20 N 1.30235 * 125.46489 * 0.02562 * 19 18 17 21 21 C 1.31035 * 117.11096 * 179.97438 * 20 19 18 22 22 C 1.33981 * 115.83398 * 359.97438 * 21 20 19 23 23 S 1.76180 * 125.46653 * 179.97438 * 19 18 17 24 24 N 1.32743 * 121.60208 * 0.25411 * 18 17 16 25 25 H 1.08999 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46789 * 299.99914 * 1 2 3 27 27 H 1.09000 * 109.47364 * 59.99599 * 1 2 3 28 28 H 0.97005 * 119.99457 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47332 * 270.00429 * 13 12 2 30 30 H 1.09005 * 109.46869 * 30.00622 * 13 12 2 31 31 H 1.09004 * 109.47139 * 150.00285 * 13 12 2 32 32 H 1.08000 * 120.73609 * 359.95010 * 15 14 12 33 33 H 1.07991 * 120.34607 * 179.97438 * 16 15 14 34 34 H 1.08006 * 122.08303 * 180.02562 * 21 20 19 35 35 H 1.08006 * 125.91514 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.1465 -2.2873 3.6036 10 1 3.1467 -0.1876 4.8164 11 1 1.1661 -1.5870 4.8159 12 7 2.0183 -0.6905 -1.1962 13 6 1.6408 -2.0844 -1.4428 14 6 2.8371 -0.0253 -2.0944 15 6 3.3882 1.2165 -1.7660 16 6 4.1998 1.8443 -2.6920 17 7 4.4313 1.2560 -3.8551 18 6 3.8952 0.0762 -4.1413 19 6 4.1787 -0.5459 -5.4520 20 7 4.9286 -0.0333 -6.3853 21 6 5.0691 -0.7282 -7.4873 22 6 4.4183 -1.8987 -7.5264 23 16 3.5575 -2.1002 -6.0016 24 7 3.1062 -0.5563 -3.2814 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7083 1.1608 3.4845 29 1 2.3750 -2.7463 -0.9835 30 1 0.6583 -2.2765 -1.0115 31 1 1.6083 -2.2675 -2.5168 32 1 3.1839 1.6756 -0.8100 33 1 4.6405 2.8046 -2.4690 34 1 5.6726 -0.3795 -8.3123 35 1 4.4208 -2.5977 -8.3497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601124193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:57 Heat of formation + Delta-G solvation = 113.368025 kcal Electronic energy + Delta-G solvation = -20077.558341 eV Core-core repulsion = 17010.416482 eV Total energy + Delta-G solvation = -3067.141859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.49790 -39.28806 -36.94844 -33.56220 -32.70667 -31.63582 -29.67230 -29.26333 -26.36220 -25.82242 -25.36926 -23.16245 -22.69708 -20.63959 -19.20168 -18.39101 -17.00436 -16.69854 -16.41612 -15.61162 -15.04781 -14.95100 -14.60813 -14.16157 -14.04505 -13.81000 -13.31936 -13.14813 -12.90037 -12.69363 -11.71195 -11.48709 -11.39384 -11.26744 -10.99672 -10.83161 -10.65783 -10.51528 -10.28117 -10.09571 -9.96085 -9.67510 -9.38049 -9.21308 -8.77659 -8.61658 -8.56412 -7.11678 -6.24843 -4.34455 0.22853 1.25681 1.61812 1.73960 1.91075 2.93012 3.16451 3.25274 3.27439 3.36407 3.93972 4.26430 4.38709 4.62992 4.95277 5.05767 5.07405 5.28228 5.37959 5.56345 5.82668 5.91581 6.01492 6.11877 6.17764 6.35679 6.56931 6.65997 6.72324 6.82757 7.14345 7.21847 7.51856 7.67894 7.74106 7.89873 8.06609 8.21976 8.59935 8.74629 9.33732 10.79008 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.029007 B = 0.003866 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.039468 B = 7240.257121 C = 7598.149345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.264 3.736 3 H 0.055 0.945 4 C -0.529 4.529 5 H 0.063 0.937 6 C 0.067 3.933 7 N -0.888 5.888 8 Si 0.900 3.100 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.567 5.567 13 C 0.100 3.900 14 C 0.447 3.553 15 C -0.271 4.271 16 C 0.162 3.838 17 N -0.535 5.535 18 C 0.407 3.593 19 C 0.131 3.869 20 N -0.433 5.433 21 C 0.034 3.966 22 C -0.263 4.263 23 S 0.155 5.845 24 N -0.577 5.577 25 H 0.035 0.965 26 H 0.097 0.903 27 H 0.014 0.986 28 H 0.265 0.735 29 H 0.045 0.955 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.154 0.846 33 H 0.165 0.835 34 H 0.175 0.825 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.378 -3.647 -13.968 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.073 0.927 4 C -0.568 4.568 5 H 0.081 0.919 6 C -0.136 4.136 7 N -0.526 5.526 8 Si 0.728 3.272 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.274 5.274 13 C -0.043 4.043 14 C 0.202 3.798 15 C -0.301 4.301 16 C 0.003 3.997 17 N -0.257 5.257 18 C 0.136 3.864 19 C -0.145 4.145 20 N -0.148 5.148 21 C -0.119 4.119 22 C -0.404 4.404 23 S 0.408 5.592 24 N -0.305 5.305 25 H 0.054 0.946 26 H 0.116 0.884 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.064 0.936 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.172 0.828 33 H 0.182 0.818 34 H 0.192 0.808 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.888 -4.307 -13.933 14.867 hybrid contribution 0.596 0.158 1.029 1.200 sum 3.485 -4.149 -12.904 13.996 Atomic orbital electron populations 1.22145 0.97622 1.00035 1.01080 1.19144 0.91326 0.93401 0.79721 0.92719 1.21363 1.32095 1.13412 0.89907 0.91904 1.24887 0.94701 0.94935 0.99058 1.69864 1.36086 1.22606 1.24039 0.86401 0.78695 0.79694 0.82450 1.19725 1.20786 1.20812 1.47264 1.46655 1.11944 1.21564 1.21460 1.00326 0.81861 1.00670 1.18469 0.86897 0.88417 0.86055 1.22563 1.04837 0.98456 1.04232 1.22807 0.91554 0.98175 0.87211 1.68320 1.26366 1.10067 1.20941 1.19098 0.90094 0.87774 0.89425 1.24746 0.99588 0.94618 0.95535 1.66425 1.15299 1.32791 1.00308 1.21730 1.01986 0.91738 0.96493 1.27392 1.06141 1.03614 1.03235 1.85230 1.45901 1.20171 1.07911 1.67654 1.21260 1.38129 1.03466 0.94620 0.88412 0.96740 0.92499 0.93646 0.91257 0.91667 0.82823 0.81751 0.80760 0.80350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.92 37.16 0.33 -2.98 16 2 C 0.26 6.02 2.55 -69.09 -0.18 5.84 16 3 H 0.06 1.31 5.48 -51.93 -0.28 1.03 16 4 C -0.53 -13.22 8.39 -34.44 -0.29 -13.51 16 5 H 0.06 1.61 7.69 -52.49 -0.40 1.21 16 6 C 0.07 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -23.03 11.32 55.43 0.63 -22.40 16 8 Si 0.90 19.95 29.54 -169.99 -5.02 14.92 16 9 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 12 N -0.57 -11.68 2.86 -175.24 -0.50 -12.18 16 13 C 0.10 1.82 9.86 59.85 0.59 2.41 16 14 C 0.45 8.96 7.35 -154.88 -1.14 7.82 16 15 C -0.27 -5.03 9.33 -39.02 -0.36 -5.39 16 16 C 0.16 2.72 11.28 -17.32 -0.20 2.53 16 17 N -0.54 -9.98 10.30 -11.31 -0.12 -10.10 16 18 C 0.41 7.63 7.59 -156.94 -1.19 6.44 16 19 C 0.13 2.18 7.47 -14.31 -0.11 2.07 16 20 N -0.43 -6.85 10.48 -11.36 -0.12 -6.97 16 21 C 0.03 0.40 11.25 -19.39 -0.22 0.19 16 22 C -0.26 -2.67 11.36 29.24 0.33 -2.34 16 23 S 0.15 1.99 23.19 -107.50 -2.49 -0.50 16 24 N -0.58 -11.07 8.93 -10.46 -0.09 -11.16 16 25 H 0.03 0.75 6.62 -51.93 -0.34 0.40 16 26 H 0.10 2.36 6.07 -51.93 -0.32 2.04 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.22 6.36 -51.93 -0.33 0.89 16 31 H 0.06 1.10 7.27 -51.93 -0.38 0.72 16 32 H 0.15 2.86 6.02 -52.49 -0.32 2.55 16 33 H 0.17 2.13 8.06 -52.49 -0.42 1.70 16 34 H 0.18 1.47 8.06 -52.48 -0.42 1.05 16 35 H 0.18 1.16 8.06 -52.48 -0.42 0.74 16 LS Contribution 312.86 15.07 4.71 4.71 Total: -1.00 -28.38 312.86 -9.14 -37.52 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -3.62 Total: 1.48 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -2.52 Total: 4.67 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.20 Total: -62.81 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.92 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.49 Total: -0.50 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.38 -9.14 -37.52 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601124193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.887 kcal (2) G-P(sol) polarization free energy of solvation -28.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds