Wall clock time and date at job start Tue Mar 31 2020 07:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46987 * 2 1 4 4 C 1.50693 * 109.47240 * 120.00517 * 2 1 3 5 5 H 1.07999 * 120.00751 * 119.99983 * 4 2 1 6 6 C 1.37886 * 119.99982 * 299.99551 * 4 2 1 7 7 N 1.31517 * 119.99462 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 120.00177 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46890 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46698 * 120.00202 * 8 6 4 11 11 H 1.48500 * 109.47094 * 240.00597 * 8 6 4 12 12 N 1.46497 * 109.46793 * 240.00387 * 2 1 3 13 13 C 1.46500 * 120.00272 * 301.30781 * 12 2 1 14 14 C 1.38552 * 119.99986 * 121.31365 * 12 2 1 15 15 C 1.39777 * 120.47991 * 10.90936 * 14 12 2 16 16 C 1.38213 * 118.53053 * 179.97438 * 15 14 12 17 17 N 1.32380 * 119.30777 * 359.97438 * 16 15 14 18 18 C 1.32709 * 120.92418 * 0.02562 * 17 16 15 19 19 C 1.47829 * 119.19938 * 179.97438 * 18 17 16 20 20 N 1.30235 * 125.46489 * 0.02562 * 19 18 17 21 21 C 1.31035 * 117.11096 * 179.97438 * 20 19 18 22 22 C 1.33981 * 115.83398 * 359.97438 * 21 20 19 23 23 S 1.76180 * 125.46653 * 179.97438 * 19 18 17 24 24 N 1.32743 * 121.60208 * 0.25411 * 18 17 16 25 25 H 1.08999 * 109.47433 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.46789 * 299.99914 * 1 2 3 27 27 H 1.09000 * 109.47364 * 59.99599 * 1 2 3 28 28 H 0.97005 * 119.99457 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47332 * 270.00429 * 13 12 2 30 30 H 1.09005 * 109.46869 * 30.00622 * 13 12 2 31 31 H 1.09004 * 109.47139 * 150.00285 * 13 12 2 32 32 H 1.08000 * 120.73609 * 359.95010 * 15 14 12 33 33 H 1.07991 * 120.34607 * 179.97438 * 16 15 14 34 34 H 1.08006 * 122.08303 * 180.02562 * 21 20 19 35 35 H 1.08006 * 125.91514 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3214 -1.1206 4.0079 9 1 3.1465 -2.2873 3.6036 10 1 3.1467 -0.1876 4.8164 11 1 1.1661 -1.5870 4.8159 12 7 2.0183 -0.6905 -1.1962 13 6 1.6408 -2.0844 -1.4428 14 6 2.8371 -0.0253 -2.0944 15 6 3.3882 1.2165 -1.7660 16 6 4.1998 1.8443 -2.6920 17 7 4.4313 1.2560 -3.8551 18 6 3.8952 0.0762 -4.1413 19 6 4.1787 -0.5459 -5.4520 20 7 4.9286 -0.0333 -6.3853 21 6 5.0691 -0.7282 -7.4873 22 6 4.4183 -1.8987 -7.5264 23 16 3.5575 -2.1002 -6.0016 24 7 3.1062 -0.5563 -3.2814 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 0.7083 1.1608 3.4845 29 1 2.3750 -2.7463 -0.9835 30 1 0.6583 -2.2765 -1.0115 31 1 1.6083 -2.2675 -2.5168 32 1 3.1839 1.6756 -0.8100 33 1 4.6405 2.8046 -2.4690 34 1 5.6726 -0.3795 -8.3123 35 1 4.4208 -2.5977 -8.3497 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601124193.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:57 Heat of formation + Delta-G solvation = 97.523854 kcal Electronic energy + Delta-G solvation = -20078.245396 eV Core-core repulsion = 17010.416482 eV Total energy + Delta-G solvation = -3067.828914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -41.89180 -40.33531 -38.53343 -35.28118 -34.15801 -33.08974 -30.97153 -30.78155 -27.77082 -27.26739 -27.06683 -24.45975 -24.14866 -22.11235 -20.42966 -19.55773 -18.60752 -18.12558 -18.00049 -16.80753 -16.71696 -16.34439 -15.90632 -15.62932 -15.36835 -15.10392 -14.68231 -14.42760 -14.36647 -14.08209 -13.51263 -13.05547 -12.99051 -12.73536 -12.56514 -12.34154 -12.33090 -12.15807 -12.00293 -11.62204 -11.30518 -11.01497 -10.74021 -10.53399 -10.38543 -10.20439 -9.67870 -8.69121 -8.15057 -6.32201 -0.89917 0.24211 0.35186 0.49387 0.79196 1.40374 1.44561 1.53568 1.90190 1.92013 2.41160 2.66025 2.97686 3.11365 3.38946 3.78948 3.92220 4.24602 4.34529 4.39052 4.48924 4.52654 4.65162 4.72290 4.77933 4.89250 5.00478 5.02432 5.16246 5.30127 5.42033 5.59967 5.69616 5.93129 6.10984 6.43073 6.58604 6.69614 6.79763 7.21472 7.39546 8.85899 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.029007 B = 0.003866 C = 0.003684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.039468 B = 7240.257121 C = 7598.149345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.270 3.730 3 H 0.039 0.961 4 C -0.539 4.539 5 H 0.052 0.948 6 C 0.028 3.972 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.278 1.278 12 N -0.578 5.578 13 C 0.104 3.896 14 C 0.431 3.569 15 C -0.289 4.289 16 C 0.175 3.825 17 N -0.552 5.552 18 C 0.402 3.598 19 C 0.077 3.923 20 N -0.452 5.452 21 C 0.014 3.986 22 C -0.223 4.223 23 S 0.167 5.833 24 N -0.580 5.580 25 H 0.040 0.960 26 H 0.076 0.924 27 H 0.023 0.977 28 H 0.267 0.733 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.147 0.853 33 H 0.202 0.798 34 H 0.208 0.792 35 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.101 -4.664 -15.853 17.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.169 3.831 3 H 0.057 0.943 4 C -0.578 4.578 5 H 0.070 0.930 6 C -0.173 4.173 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.203 1.203 12 N -0.287 5.287 13 C -0.038 4.038 14 C 0.186 3.814 15 C -0.319 4.319 16 C 0.015 3.985 17 N -0.274 5.274 18 C 0.132 3.868 19 C -0.197 4.197 20 N -0.168 5.168 21 C -0.139 4.139 22 C -0.363 4.363 23 S 0.419 5.581 24 N -0.309 5.309 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.043 0.957 28 H 0.076 0.924 29 H 0.059 0.941 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.165 0.835 33 H 0.219 0.781 34 H 0.225 0.775 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.618 -5.325 -15.834 17.093 hybrid contribution 0.447 0.427 1.385 1.516 sum 4.065 -4.897 -14.449 15.789 Atomic orbital electron populations 1.21968 0.97168 1.00120 1.00446 1.18867 0.91564 0.92598 0.80050 0.94291 1.21528 1.31983 1.13162 0.91101 0.93015 1.25511 0.94909 0.95534 1.01304 1.69956 1.36769 1.23471 1.24570 0.85542 0.78169 0.78571 0.79543 1.19882 1.20646 1.20342 1.47115 1.47553 1.12648 1.21344 1.21484 1.00225 0.80754 1.01376 1.18700 0.87142 0.89049 0.86480 1.22586 1.06107 0.98582 1.04591 1.23367 0.90138 0.98935 0.86089 1.68434 1.26903 1.10495 1.21555 1.19641 0.89202 0.87732 0.90270 1.24577 1.02680 0.96905 0.95522 1.66390 1.15010 1.34186 1.01222 1.22262 1.03080 0.92255 0.96290 1.27957 1.02686 1.03159 1.02492 1.85149 1.45630 1.18008 1.09324 1.67676 1.21698 1.38236 1.03240 0.94111 0.90494 0.95747 0.92396 0.94069 0.90966 0.90497 0.83490 0.78123 0.77509 0.75887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.17 8.92 71.98 0.64 -5.53 16 2 C 0.27 12.58 2.55 44.24 0.11 12.70 16 3 H 0.04 1.94 5.48 -2.39 -0.01 1.93 16 4 C -0.54 -27.35 8.39 25.60 0.21 -27.13 16 5 H 0.05 2.69 7.69 -2.91 -0.02 2.67 16 6 C 0.03 1.43 5.30 84.66 0.45 1.88 16 7 N -0.91 -47.65 11.32 21.45 0.24 -47.41 16 8 Si 0.96 41.03 29.54 68.60 2.03 43.05 16 9 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 10 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 11 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 12 N -0.58 -24.21 2.86 -708.34 -2.02 -26.23 16 13 C 0.10 3.81 9.86 127.77 1.26 5.07 16 14 C 0.43 17.56 7.35 133.26 0.98 18.54 16 15 C -0.29 -10.95 9.33 22.64 0.21 -10.74 16 16 C 0.17 5.82 11.28 84.60 0.95 6.78 16 17 N -0.55 -20.55 10.30 -189.70 -1.95 -22.50 16 18 C 0.40 15.10 7.59 137.31 1.04 16.14 16 19 C 0.08 2.51 7.47 87.47 0.65 3.16 16 20 N -0.45 -13.66 10.48 -189.86 -1.99 -15.65 16 21 C 0.01 0.28 11.25 83.84 0.94 1.23 16 22 C -0.22 -3.62 11.36 66.85 0.76 -2.86 16 23 S 0.17 3.97 23.19 -56.49 -1.31 2.66 16 24 N -0.58 -22.46 8.93 -186.99 -1.67 -24.13 16 25 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 26 H 0.08 3.77 6.07 -2.38 -0.01 3.76 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.27 13.31 8.31 -92.70 -0.77 12.54 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 2.54 6.36 -2.38 -0.02 2.53 16 31 H 0.08 2.58 7.27 -2.38 -0.02 2.57 16 32 H 0.15 5.69 6.02 -2.91 -0.02 5.68 16 33 H 0.20 4.93 8.06 -2.92 -0.02 4.91 16 34 H 0.21 2.67 8.06 -2.91 -0.02 2.65 16 35 H 0.22 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -61.93 312.86 2.67 -59.26 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 1.13 Total: 11.70 kcal Atomic # 6 Polarization: 11.02 SS G_CDS: 8.22 Total: 19.24 kcal Atomic # 7 Polarization: -128.53 SS G_CDS: -7.39 Total: -135.92 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.31 Total: 2.66 kcal Total: -61.93 2.67 -59.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601124193.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.786 kcal (2) G-P(sol) polarization free energy of solvation -61.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.524 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds