Wall clock time and date at job start Tue Mar 31 2020 07:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09000 * 109.46910 * 305.39876 * 3 2 1 5 5 C 1.50702 * 109.46873 * 185.39692 * 3 2 1 6 6 H 1.07997 * 119.99962 * 268.14721 * 5 3 2 7 7 C 1.37878 * 119.99549 * 88.15425 * 5 3 2 8 8 N 1.31511 * 120.00467 * 353.61642 * 7 5 3 9 9 Si 1.86805 * 119.99615 * 173.34479 * 7 5 3 10 10 H 1.48497 * 109.47337 * 89.99740 * 9 7 5 11 11 H 1.48502 * 109.46838 * 209.99661 * 9 7 5 12 12 H 1.48494 * 109.47243 * 329.99659 * 9 7 5 13 13 N 1.46502 * 109.46840 * 65.40038 * 3 2 1 14 14 C 1.31983 * 119.99365 * 239.99904 * 13 3 2 15 15 C 1.46937 * 120.53540 * 179.72401 * 14 13 3 16 16 C 1.34816 * 118.39334 * 179.73918 * 15 14 13 17 17 N 1.36807 * 119.32106 * 0.55678 * 16 15 14 18 18 H 0.96996 * 119.46815 * 179.70097 * 17 16 15 19 19 C 1.36462 * 121.06928 * 359.68025 * 17 16 15 20 20 C 1.47246 * 119.12288 * 180.02562 * 19 17 16 21 21 N 1.30553 * 125.54699 * 179.97438 * 20 19 17 22 22 C 1.30885 * 115.85732 * 179.97438 * 21 20 19 23 23 C 1.34052 * 115.79184 * 0.02562 * 22 21 20 24 24 S 1.71065 * 109.13048 * 359.76303 * 23 22 21 25 25 N 1.31473 * 121.75627 * 0.02562 * 19 17 16 26 26 H 1.09008 * 109.47263 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47244 * 299.99524 * 1 2 3 28 28 H 1.08998 * 109.47404 * 59.99992 * 1 2 3 29 29 H 1.09002 * 109.47306 * 239.99933 * 2 1 3 30 30 H 1.08998 * 109.47404 * 120.00007 * 2 1 3 31 31 H 0.97003 * 120.00094 * 354.26902 * 8 7 5 32 32 H 1.07996 * 120.80587 * 0.02562 * 15 14 13 33 33 H 1.08000 * 120.34502 * 180.25956 * 16 15 14 34 34 H 1.07994 * 122.10217 * 180.02562 * 22 21 20 35 35 H 1.08004 * 125.43358 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5997 1.9835 -0.8377 5 6 3.5410 1.4446 -0.1336 6 1 4.1618 1.4463 0.7501 7 6 4.1217 1.4446 -1.3842 8 7 3.3723 1.3161 -2.4572 9 14 5.9722 1.6346 -1.5546 10 1 6.6118 0.2947 -1.5303 11 1 6.2842 2.3088 -2.8404 12 1 6.4917 2.4515 -0.4286 13 7 1.6605 2.0946 1.2559 14 6 0.8955 3.1698 1.2362 15 6 0.5028 3.8297 2.4890 16 6 -0.2754 4.9284 2.4183 17 7 -0.6813 5.3842 1.1940 18 1 -1.2448 6.1719 1.1409 19 6 -0.3060 4.7488 0.0461 20 6 -0.7673 5.2766 -1.2488 21 7 -0.4848 4.7707 -2.4187 22 6 -0.9973 5.3943 -3.4491 23 6 -1.7444 6.4709 -3.1669 24 16 -1.7948 6.6894 -1.4710 25 7 0.4564 3.6779 0.0655 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4230 1.1382 -2.3674 32 1 0.8334 3.4467 3.4431 33 1 -0.5792 5.4407 3.3192 34 1 -0.8288 5.0622 -4.4628 35 1 -2.2394 7.0977 -3.8940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601144147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:01 Heat of formation + Delta-G solvation = 115.758642 kcal Electronic energy + Delta-G solvation = -20367.480097 eV Core-core repulsion = 17300.441903 eV Total energy + Delta-G solvation = -3067.038194 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.40031 -39.42064 -36.08309 -33.74280 -32.90490 -31.52086 -30.07395 -29.70151 -26.34922 -26.24448 -23.45681 -22.99302 -21.94147 -20.18705 -19.63903 -18.77765 -17.88384 -17.10610 -16.55370 -15.95412 -15.23807 -15.17205 -14.29263 -13.97572 -13.62286 -13.57599 -13.52121 -13.08520 -13.00843 -12.34886 -11.94537 -11.79330 -11.40087 -11.02652 -10.69643 -10.51283 -10.35788 -10.02313 -9.96509 -9.91735 -9.80245 -9.67689 -9.53336 -8.80919 -8.56960 -8.20616 -7.85492 -6.78808 -6.14712 -3.85109 0.09469 0.92883 1.42271 1.81145 1.86836 2.74182 2.91767 3.52825 3.58043 3.74071 4.07585 4.41822 4.65639 4.68115 4.74045 4.93502 5.18841 5.23094 5.51150 5.56847 5.76337 5.99129 6.11338 6.20405 6.21110 6.42969 6.56713 6.83057 6.88321 7.16611 7.21277 7.24917 7.56603 7.63408 7.85029 8.36398 8.56708 8.61799 9.00446 9.21499 9.86885 11.21759 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.005594 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.695677 B = 5004.350733 C = 5841.350831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C 0.176 3.824 4 H 0.050 0.950 5 C -0.579 4.579 6 H 0.049 0.951 7 C 0.021 3.979 8 N -0.907 5.907 9 Si 1.069 2.931 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.291 1.291 13 N -0.462 5.462 14 C 0.279 3.721 15 C -0.176 4.176 16 C 0.086 3.914 17 N -0.653 5.653 18 H 0.404 0.596 19 C 0.434 3.566 20 C 0.087 3.913 21 N -0.390 5.390 22 C 0.041 3.959 23 C -0.268 4.268 24 S 0.141 5.859 25 N -0.464 5.464 26 H 0.034 0.966 27 H 0.040 0.960 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.273 0.727 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.182 0.818 35 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 14.734 3.885 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.141 4.141 3 C 0.067 3.933 4 H 0.068 0.932 5 C -0.618 4.618 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.543 5.543 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.210 1.210 12 H -0.217 1.217 13 N -0.179 5.179 14 C 0.000 4.000 15 C -0.206 4.206 16 C -0.036 4.036 17 N -0.278 5.278 18 H 0.239 0.761 19 C 0.154 3.846 20 C -0.189 4.189 21 N -0.104 5.104 22 C -0.115 4.115 23 C -0.409 4.409 24 S 0.394 5.606 25 N -0.188 5.188 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.164 0.836 33 H 0.183 0.817 34 H 0.198 0.802 35 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -13.045 13.667 3.380 19.193 hybrid contribution -1.759 0.636 0.108 1.874 sum -14.804 14.303 3.488 20.878 Atomic orbital electron populations 1.21802 0.98750 0.99158 1.00516 1.21640 0.92233 0.99581 1.00608 1.19618 0.96149 0.90192 0.87377 0.93219 1.21819 0.89928 1.55340 0.94684 0.93228 1.25774 1.06553 0.94060 0.91995 1.70673 1.08480 1.44517 1.30636 0.83569 0.74610 0.76558 0.75451 1.21547 1.21041 1.21701 1.73194 1.06183 1.04941 1.33565 1.21041 0.97262 0.95711 0.85974 1.22208 1.02402 0.96901 0.99137 1.21507 0.98327 0.96662 0.87131 1.41736 1.51024 1.30601 1.04422 0.76099 1.18954 0.92960 0.90236 0.82430 1.25221 1.02581 0.97040 0.94080 1.66814 1.18766 1.27906 0.96931 1.21967 0.96819 0.93019 0.99703 1.26578 1.09233 1.05290 0.99834 1.83478 1.46433 1.28609 1.02057 1.69539 1.10779 1.08559 1.29949 0.94651 0.94127 0.93720 0.92365 0.93479 0.91537 0.83587 0.81727 0.80151 0.79861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 9.80 37.15 0.36 -2.92 16 2 C -0.10 -2.68 5.46 -26.73 -0.15 -2.83 16 3 C 0.18 5.07 1.93 -69.08 -0.13 4.93 16 4 H 0.05 1.56 5.55 -51.93 -0.29 1.27 16 5 C -0.58 -18.13 8.63 -34.44 -0.30 -18.43 16 6 H 0.05 1.59 7.82 -52.49 -0.41 1.18 16 7 C 0.02 0.65 5.45 -17.82 -0.10 0.56 16 8 N -0.91 -29.28 13.55 55.43 0.75 -28.53 16 9 Si 1.07 27.36 29.91 -169.99 -5.08 22.27 16 10 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 N -0.46 -12.15 9.68 -53.85 -0.52 -12.68 16 14 C 0.28 6.32 7.60 -155.99 -1.19 5.13 16 15 C -0.18 -2.88 10.29 -37.27 -0.38 -3.27 16 16 C 0.09 0.99 11.28 -16.55 -0.19 0.80 16 17 N -0.65 -7.76 5.33 -10.75 -0.06 -7.82 16 18 H 0.40 3.12 7.84 -40.82 -0.32 2.80 16 19 C 0.43 7.37 7.65 -154.91 -1.19 6.19 16 20 C 0.09 1.33 7.44 -14.44 -0.11 1.22 16 21 N -0.39 -6.87 10.57 -11.51 -0.12 -6.99 16 22 C 0.04 0.52 11.24 -19.43 -0.22 0.31 16 23 C -0.27 -2.52 11.08 29.26 0.32 -2.19 16 24 S 0.14 1.30 22.21 -107.50 -2.39 -1.09 16 25 N -0.46 -10.45 8.70 -9.14 -0.08 -10.53 16 26 H 0.03 0.69 8.14 -51.92 -0.42 0.27 16 27 H 0.04 0.91 7.76 -51.93 -0.40 0.50 16 28 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.06 1.60 7.77 -51.93 -0.40 1.20 16 30 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.27 8.93 6.44 -40.82 -0.26 8.67 16 32 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 33 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.18 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.18 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -39.70 318.96 -9.79 -49.49 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -3.84 Total: 1.55 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -3.25 Total: -10.49 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: -0.03 Total: -66.54 kcal Atomic # 14 Polarization: 27.36 SS G_CDS: -5.08 Total: 22.27 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.39 Total: -1.09 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -39.70 -9.79 -49.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601144147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.251 kcal (2) G-P(sol) polarization free energy of solvation -39.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds