Wall clock time and date at job start Tue Mar 31 2020 07:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46960 * 2 1 4 4 H 1.09000 * 109.46910 * 305.39876 * 3 2 1 5 5 C 1.50702 * 109.46873 * 185.39692 * 3 2 1 6 6 H 1.07997 * 119.99962 * 268.14721 * 5 3 2 7 7 C 1.37878 * 119.99549 * 88.15425 * 5 3 2 8 8 N 1.31511 * 120.00467 * 353.61642 * 7 5 3 9 9 Si 1.86805 * 119.99615 * 173.34479 * 7 5 3 10 10 H 1.48497 * 109.47337 * 89.99740 * 9 7 5 11 11 H 1.48502 * 109.46838 * 209.99661 * 9 7 5 12 12 H 1.48494 * 109.47243 * 329.99659 * 9 7 5 13 13 N 1.46502 * 109.46840 * 65.40038 * 3 2 1 14 14 C 1.31983 * 119.99365 * 239.99904 * 13 3 2 15 15 C 1.46937 * 120.53540 * 179.72401 * 14 13 3 16 16 C 1.34816 * 118.39334 * 179.73918 * 15 14 13 17 17 N 1.36807 * 119.32106 * 0.55678 * 16 15 14 18 18 H 0.96996 * 119.46815 * 179.70097 * 17 16 15 19 19 C 1.36462 * 121.06928 * 359.68025 * 17 16 15 20 20 C 1.47246 * 119.12288 * 180.02562 * 19 17 16 21 21 N 1.30553 * 125.54699 * 179.97438 * 20 19 17 22 22 C 1.30885 * 115.85732 * 179.97438 * 21 20 19 23 23 C 1.34052 * 115.79184 * 0.02562 * 22 21 20 24 24 S 1.71065 * 109.13048 * 359.76303 * 23 22 21 25 25 N 1.31473 * 121.75627 * 0.02562 * 19 17 16 26 26 H 1.09008 * 109.47263 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47244 * 299.99524 * 1 2 3 28 28 H 1.08998 * 109.47404 * 59.99992 * 1 2 3 29 29 H 1.09002 * 109.47306 * 239.99933 * 2 1 3 30 30 H 1.08998 * 109.47404 * 120.00007 * 2 1 3 31 31 H 0.97003 * 120.00094 * 354.26902 * 8 7 5 32 32 H 1.07996 * 120.80587 * 0.02562 * 15 14 13 33 33 H 1.08000 * 120.34502 * 180.25956 * 16 15 14 34 34 H 1.07994 * 122.10217 * 180.02562 * 22 21 20 35 35 H 1.08004 * 125.43358 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5997 1.9835 -0.8377 5 6 3.5410 1.4446 -0.1336 6 1 4.1618 1.4463 0.7501 7 6 4.1217 1.4446 -1.3842 8 7 3.3723 1.3161 -2.4572 9 14 5.9722 1.6346 -1.5546 10 1 6.6118 0.2947 -1.5303 11 1 6.2842 2.3088 -2.8404 12 1 6.4917 2.4515 -0.4286 13 7 1.6605 2.0946 1.2559 14 6 0.8955 3.1698 1.2362 15 6 0.5028 3.8297 2.4890 16 6 -0.2754 4.9284 2.4183 17 7 -0.6813 5.3842 1.1940 18 1 -1.2448 6.1719 1.1409 19 6 -0.3060 4.7488 0.0461 20 6 -0.7673 5.2766 -1.2488 21 7 -0.4848 4.7707 -2.4187 22 6 -0.9973 5.3943 -3.4491 23 6 -1.7444 6.4709 -3.1669 24 16 -1.7948 6.6894 -1.4710 25 7 0.4564 3.6779 0.0655 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 2.4230 1.1382 -2.3674 32 1 0.8334 3.4467 3.4431 33 1 -0.5792 5.4407 3.3192 34 1 -0.8288 5.0622 -4.4628 35 1 -2.2394 7.0977 -3.8940 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601144147.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:00 Heat of formation + Delta-G solvation = 84.506784 kcal Electronic energy + Delta-G solvation = -20368.835280 eV Core-core repulsion = 17300.441903 eV Total energy + Delta-G solvation = -3068.393376 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -41.66626 -40.49815 -37.89379 -35.48510 -34.19817 -33.61633 -31.49261 -30.92365 -28.27788 -27.45502 -25.27361 -24.46011 -23.49819 -21.52297 -21.26764 -19.93388 -19.13432 -18.80163 -17.96663 -17.47914 -16.69023 -16.40360 -15.70347 -15.53266 -15.28577 -14.86664 -14.80429 -14.55494 -14.41748 -14.14918 -13.75394 -13.31962 -12.83908 -12.66399 -12.64900 -12.49421 -12.02536 -11.97416 -11.95726 -11.52251 -11.00124 -10.81765 -10.69044 -10.61974 -10.44847 -9.75868 -9.69859 -8.69257 -8.27989 -6.29641 -0.93795 -0.01226 0.53590 0.54701 0.69252 1.42417 1.54759 1.59935 1.72911 1.85942 2.53737 2.96263 3.02670 3.20569 3.56232 3.63327 4.04922 4.19557 4.27967 4.31054 4.31805 4.35266 4.43789 4.55275 4.89031 4.93505 4.99899 5.02367 5.18176 5.21689 5.42644 5.54758 5.78547 6.08092 6.19982 6.27298 6.61388 6.69539 7.21751 7.38613 7.59299 8.75109 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.014226 B = 0.005594 C = 0.004792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.695677 B = 5004.350733 C = 5841.350831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.096 4.096 3 C 0.188 3.812 4 H 0.011 0.989 5 C -0.597 4.597 6 H 0.029 0.971 7 C -0.033 4.033 8 N -0.928 5.928 9 Si 1.119 2.881 10 H -0.266 1.266 11 H -0.277 1.277 12 H -0.280 1.280 13 N -0.548 5.548 14 C 0.297 3.703 15 C -0.233 4.233 16 C 0.147 3.853 17 N -0.623 5.623 18 H 0.432 0.568 19 C 0.454 3.546 20 C 0.010 3.990 21 N -0.453 5.453 22 C 0.002 3.998 23 C -0.239 4.239 24 S 0.281 5.719 25 N -0.554 5.554 26 H 0.066 0.934 27 H 0.040 0.960 28 H 0.028 0.972 29 H 0.029 0.971 30 H 0.040 0.960 31 H 0.255 0.745 32 H 0.159 0.841 33 H 0.243 0.757 34 H 0.186 0.814 35 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.139 19.360 5.071 27.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.135 4.135 3 C 0.078 3.922 4 H 0.028 0.972 5 C -0.635 4.635 6 H 0.047 0.953 7 C -0.231 4.231 8 N -0.565 5.565 9 Si 0.940 3.060 10 H -0.191 1.191 11 H -0.202 1.202 12 H -0.206 1.206 13 N -0.268 5.268 14 C 0.020 3.980 15 C -0.263 4.263 16 C 0.024 3.976 17 N -0.248 5.248 18 H 0.272 0.728 19 C 0.176 3.824 20 C -0.262 4.262 21 N -0.169 5.169 22 C -0.154 4.154 23 C -0.380 4.380 24 S 0.534 5.466 25 N -0.281 5.281 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.176 0.824 33 H 0.259 0.741 34 H 0.203 0.797 35 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -16.101 18.366 4.599 24.854 hybrid contribution -1.297 -0.245 -0.295 1.352 sum -17.398 18.121 4.304 25.487 Atomic orbital electron populations 1.21547 0.95926 1.00760 0.99692 1.21466 0.94783 0.98658 0.98626 1.19153 0.94167 0.90728 0.88130 0.97154 1.22183 0.92264 1.55014 0.94077 0.95295 1.27368 1.10904 0.93118 0.91679 1.70798 1.07665 1.46912 1.31132 0.82959 0.69318 0.77837 0.75894 1.19141 1.20228 1.20602 1.73127 1.13606 1.09406 1.30629 1.21903 0.93849 0.93793 0.88447 1.22263 1.06899 0.99886 0.97236 1.22587 0.92944 0.93591 0.88526 1.41970 1.48974 1.30179 1.03628 0.72800 1.19466 0.89830 0.88356 0.84789 1.25199 1.06884 1.01317 0.92805 1.66731 1.20544 1.30714 0.98882 1.22122 0.99016 0.94906 0.99325 1.27295 1.05695 1.03192 1.01824 1.82864 1.41081 1.22304 1.00319 1.69530 1.15399 1.12396 1.30737 0.91519 0.94038 0.95268 0.95191 0.94105 0.93471 0.82383 0.74086 0.79698 0.75299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.92 9.80 71.98 0.71 -5.21 16 2 C -0.10 -5.56 5.46 30.59 0.17 -5.39 16 3 C 0.19 11.91 1.93 44.25 0.09 12.00 16 4 H 0.01 0.73 5.55 -2.39 -0.01 0.72 16 5 C -0.60 -40.52 8.63 25.60 0.22 -40.29 16 6 H 0.03 2.00 7.82 -2.91 -0.02 1.98 16 7 C -0.03 -2.16 5.45 84.66 0.46 -1.69 16 8 N -0.93 -64.24 13.55 21.45 0.29 -63.95 16 9 Si 1.12 57.69 29.91 68.60 2.05 59.74 16 10 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 12 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 13 N -0.55 -31.29 9.68 -324.27 -3.14 -34.43 16 14 C 0.30 14.22 7.60 136.58 1.04 15.26 16 15 C -0.23 -7.39 10.29 23.76 0.24 -7.15 16 16 C 0.15 2.67 11.28 83.13 0.94 3.61 16 17 N -0.62 -12.20 5.33 -187.91 -1.00 -13.20 16 18 H 0.43 3.87 7.84 -92.71 -0.73 3.14 16 19 C 0.45 15.17 7.65 136.34 1.04 16.21 16 20 C 0.01 0.31 7.44 87.25 0.65 0.96 16 21 N -0.45 -16.45 10.57 -190.34 -2.01 -18.46 16 22 C 0.00 0.05 11.24 83.88 0.94 1.00 16 23 C -0.24 -3.44 11.08 66.87 0.74 -2.69 16 24 S 0.28 3.72 22.21 -56.49 -1.25 2.47 16 25 N -0.55 -26.37 8.70 -182.82 -1.59 -27.96 16 26 H 0.07 2.73 8.14 -2.38 -0.02 2.71 16 27 H 0.04 1.97 7.76 -2.39 -0.02 1.95 16 28 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.03 1.81 7.77 -2.39 -0.02 1.79 16 30 H 0.04 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.26 18.29 6.44 -92.71 -0.60 17.69 16 32 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 33 H 0.24 0.84 8.06 -2.91 -0.02 0.82 16 34 H 0.19 4.09 8.06 -2.91 -0.02 4.07 16 35 H 0.23 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -104.32 318.96 1.16 -103.16 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 0.57 Total: 6.05 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: 7.24 Total: -13.41 kcal Atomic # 7 Polarization: -150.56 SS G_CDS: -7.45 Total: -158.01 kcal Atomic # 14 Polarization: 57.69 SS G_CDS: 2.05 Total: 59.74 kcal Atomic # 16 Polarization: 3.72 SS G_CDS: -1.25 Total: 2.47 kcal Total: -104.32 1.16 -103.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601144147.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.667 kcal (2) G-P(sol) polarization free energy of solvation -104.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -103.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds