Wall clock time and date at job start Tue Mar 31 2020 07:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46623 * 2 1 4 4 H 1.09001 * 109.47317 * 55.00458 * 3 2 1 5 5 C 1.50710 * 109.46737 * 174.99856 * 3 2 1 6 6 H 1.08000 * 119.99588 * 120.00132 * 5 3 2 7 7 C 1.37869 * 119.99939 * 300.00043 * 5 3 2 8 8 N 1.31518 * 120.00511 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99892 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46830 * 90.00019 * 9 7 5 11 11 H 1.48502 * 109.47470 * 210.00168 * 9 7 5 12 12 H 1.48493 * 109.47130 * 330.00463 * 9 7 5 13 13 N 1.46492 * 109.47631 * 294.99736 * 3 2 1 14 14 C 1.31979 * 120.00042 * 120.00098 * 13 3 2 15 15 C 1.46943 * 120.54018 * 180.02562 * 14 13 3 16 16 C 1.34817 * 118.39367 * 180.02562 * 15 14 13 17 17 N 1.36802 * 119.32018 * 359.97438 * 16 15 14 18 18 H 0.97003 * 119.46705 * 179.97438 * 17 16 15 19 19 C 1.36456 * 121.07160 * 359.97438 * 17 16 15 20 20 C 1.47247 * 119.11892 * 180.02562 * 19 17 16 21 21 N 1.30557 * 125.54734 * 180.02562 * 20 19 17 22 22 C 1.30883 * 115.85891 * 179.97438 * 21 20 19 23 23 C 1.34044 * 115.79619 * 359.97438 * 22 21 20 24 24 S 1.71071 * 109.12723 * 359.74986 * 23 22 21 25 25 N 1.31472 * 121.75930 * 359.75191 * 19 17 16 26 26 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.46955 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47050 * 59.99904 * 1 2 3 29 29 H 1.09000 * 109.47050 * 120.00096 * 2 1 3 30 30 H 1.09001 * 109.46801 * 240.00208 * 2 1 3 31 31 H 0.96995 * 120.00483 * 179.97438 * 8 7 5 32 32 H 1.08002 * 120.80346 * 359.97438 * 15 14 13 33 33 H 1.07995 * 120.34059 * 179.97438 * 16 15 14 34 34 H 1.08004 * 122.10378 * 180.02562 * 22 21 20 35 35 H 1.08001 * 125.43988 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5419 1.4444 0.1239 6 1 4.1472 1.8890 -0.6523 7 6 4.1432 0.8785 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.4427 2.1131 2.0837 11 1 6.4391 -0.3109 2.1546 12 1 6.6131 0.8397 0.0271 13 7 1.6524 2.0975 -1.2517 14 6 0.8875 3.1727 -1.2246 15 6 0.4913 3.8388 -2.4730 16 6 -0.2906 4.9344 -2.3949 17 7 -0.6878 5.3877 -1.1668 18 1 -1.2500 6.1760 -1.1081 19 6 -0.3058 4.7491 -0.0230 20 6 -0.7587 5.2739 1.2761 21 7 -0.4695 4.7647 2.4429 22 6 -0.9743 5.3865 3.4781 23 6 -1.7215 6.4649 3.2035 24 16 -1.7714 6.6956 1.5091 25 7 0.4513 3.6746 -0.0502 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8293 -0.0618 2.9495 32 1 0.8191 3.4604 -3.4300 33 1 -0.6001 5.4488 -3.2926 34 1 -0.7991 5.0522 4.4901 35 1 -2.2102 7.0911 3.9353 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601144149.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:05 Heat of formation + Delta-G solvation = 91.997441 kcal Electronic energy + Delta-G solvation = -20252.865022 eV Core-core repulsion = 17184.796465 eV Total energy + Delta-G solvation = -3068.068557 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.60931 -40.45607 -37.68161 -35.38001 -34.14502 -33.48810 -31.41592 -30.88285 -28.66876 -27.41058 -25.30692 -24.38966 -23.36124 -21.26720 -21.21984 -19.83648 -18.92667 -18.54840 -17.85734 -17.49366 -16.70852 -16.34053 -16.12080 -15.39453 -15.16201 -14.81933 -14.70568 -14.41483 -14.38013 -13.90531 -13.71988 -13.17185 -12.93542 -12.76260 -12.61618 -12.50597 -12.15508 -11.74371 -11.68835 -11.52727 -11.04129 -10.84093 -10.77935 -10.59731 -10.54591 -9.72148 -9.58653 -8.37964 -8.01743 -6.22893 -0.89526 0.02430 0.57269 0.60439 0.74754 1.32266 1.35794 1.47271 1.65264 1.89803 2.39894 3.04304 3.07329 3.15353 3.62005 3.71111 4.11224 4.31334 4.35991 4.38098 4.41939 4.50623 4.57524 4.69768 5.00017 5.05600 5.08426 5.21351 5.34065 5.45081 5.58327 5.63213 5.89946 6.09421 6.28372 6.37458 6.72380 6.83447 7.28279 7.34607 7.63593 8.95746 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.005172 C = 0.004502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.417776 B = 5412.055538 C = 6217.737302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.100 4.100 3 C 0.211 3.789 4 H -0.004 1.004 5 C -0.523 4.523 6 H 0.035 0.965 7 C 0.009 3.991 8 N -0.917 5.917 9 Si 0.965 3.035 10 H -0.276 1.276 11 H -0.271 1.271 12 H -0.271 1.271 13 N -0.550 5.550 14 C 0.296 3.704 15 C -0.232 4.232 16 C 0.146 3.854 17 N -0.624 5.624 18 H 0.432 0.568 19 C 0.452 3.548 20 C 0.013 3.987 21 N -0.452 5.452 22 C 0.003 3.997 23 C -0.240 4.240 24 S 0.278 5.722 25 N -0.550 5.550 26 H 0.058 0.942 27 H 0.025 0.975 28 H 0.035 0.965 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.262 0.738 32 H 0.158 0.842 33 H 0.242 0.758 34 H 0.188 0.812 35 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.816 20.808 -3.563 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C 0.101 3.899 4 H 0.014 0.986 5 C -0.562 4.562 6 H 0.054 0.946 7 C -0.189 4.189 8 N -0.556 5.556 9 Si 0.789 3.211 10 H -0.202 1.202 11 H -0.196 1.196 12 H -0.195 1.195 13 N -0.270 5.270 14 C 0.019 3.981 15 C -0.262 4.262 16 C 0.022 3.978 17 N -0.249 5.249 18 H 0.271 0.729 19 C 0.174 3.826 20 C -0.259 4.259 21 N -0.169 5.169 22 C -0.153 4.153 23 C -0.382 4.382 24 S 0.531 5.469 25 N -0.277 5.277 26 H 0.077 0.923 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.071 0.929 32 H 0.176 0.824 33 H 0.258 0.742 34 H 0.204 0.796 35 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -16.958 19.573 -4.032 26.209 hybrid contribution 0.884 -0.075 1.572 1.805 sum -16.073 19.498 -2.460 25.388 Atomic orbital electron populations 1.21510 0.96896 1.00024 0.99091 1.21370 0.93769 0.98753 0.99962 1.18889 0.93455 0.90890 0.86653 0.98571 1.21373 0.92425 1.37487 1.04881 0.94647 1.25787 1.03253 0.94895 0.94990 1.70055 1.36507 1.39283 1.09783 0.85468 0.79516 0.77913 0.78159 1.20173 1.19567 1.19545 1.73150 1.13615 1.08911 1.31314 1.21899 0.94130 0.93740 0.88334 1.22270 1.06740 0.99847 0.97361 1.22557 0.93044 0.93782 0.88390 1.41962 1.49156 1.30104 1.03646 0.72870 1.19464 0.90028 0.88313 0.84794 1.25194 1.06869 1.01008 0.92839 1.66737 1.20600 1.30712 0.98818 1.22132 0.98964 0.94915 0.99265 1.27280 1.05791 1.03253 1.01845 1.82897 1.41987 1.21715 1.00343 1.69553 1.15508 1.12075 1.30569 0.92317 0.95540 0.94617 0.91405 0.95752 0.92901 0.82437 0.74236 0.79563 0.75400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 9.80 71.98 0.71 -5.32 16 2 C -0.10 -6.00 5.45 30.60 0.17 -5.83 16 3 C 0.21 13.51 2.30 44.25 0.10 13.61 16 4 H 0.00 -0.25 6.70 -2.39 -0.02 -0.27 16 5 C -0.52 -35.29 8.84 25.60 0.23 -35.06 16 6 H 0.04 2.43 7.81 -2.91 -0.02 2.40 16 7 C 0.01 0.56 5.29 84.65 0.45 1.01 16 8 N -0.92 -60.23 11.29 21.44 0.24 -59.99 16 9 Si 0.97 49.86 29.54 68.60 2.03 51.88 16 10 H -0.28 -13.84 7.11 99.48 0.71 -13.13 16 11 H -0.27 -13.18 7.11 99.48 0.71 -12.48 16 12 H -0.27 -13.68 7.11 99.48 0.71 -12.98 16 13 N -0.55 -31.46 9.66 -324.29 -3.13 -34.59 16 14 C 0.30 14.08 7.60 136.59 1.04 15.12 16 15 C -0.23 -7.32 10.29 23.77 0.24 -7.07 16 16 C 0.15 2.61 11.28 83.13 0.94 3.55 16 17 N -0.62 -11.99 5.33 -187.92 -1.00 -12.99 16 18 H 0.43 3.73 7.84 -92.71 -0.73 3.00 16 19 C 0.45 14.84 7.65 136.34 1.04 15.88 16 20 C 0.01 0.39 7.44 87.25 0.65 1.04 16 21 N -0.45 -15.96 10.57 -190.33 -2.01 -17.97 16 22 C 0.00 0.07 11.24 83.88 0.94 1.01 16 23 C -0.24 -3.28 11.08 66.86 0.74 -2.54 16 24 S 0.28 3.53 22.21 -56.49 -1.25 2.27 16 25 N -0.55 -25.91 8.70 -182.82 -1.59 -27.51 16 26 H 0.06 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.03 1.76 7.75 -2.39 -0.02 1.74 16 29 H 0.07 4.39 5.95 -2.39 -0.01 4.37 16 30 H 0.02 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 32 H 0.16 4.50 8.06 -2.91 -0.02 4.47 16 33 H 0.24 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.23 0.98 8.06 -2.91 -0.02 0.96 16 Total: -1.00 -101.06 317.91 0.92 -100.14 By element: Atomic # 1 Polarization: 2.95 SS G_CDS: 0.40 Total: 3.35 kcal Atomic # 6 Polarization: -11.84 SS G_CDS: 7.25 Total: -4.60 kcal Atomic # 7 Polarization: -145.55 SS G_CDS: -7.49 Total: -153.05 kcal Atomic # 14 Polarization: 49.86 SS G_CDS: 2.03 Total: 51.88 kcal Atomic # 16 Polarization: 3.53 SS G_CDS: -1.25 Total: 2.27 kcal Total: -101.06 0.92 -100.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601144149.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.137 kcal (2) G-P(sol) polarization free energy of solvation -101.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -100.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds