Wall clock time and date at job start Tue Mar 31 2020 06:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86851 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47269 * 124.99868 * 13 12 11 15 15 C 1.33641 * 122.74875 * 84.70430 * 14 13 12 16 16 S 1.76197 * 107.92309 * 179.97438 * 15 14 13 17 17 C 1.70975 * 90.28359 * 0.27496 * 16 15 14 18 18 C 1.50696 * 124.91620 * 179.84135 * 17 16 15 19 19 C 1.52998 * 117.50212 * 8.74985 * 18 17 16 20 20 C 1.52992 * 117.50129 * 300.08703 * 18 17 16 21 21 N 1.29024 * 110.16445 * 359.83893 * 17 16 15 22 22 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 23 23 N 1.28637 * 110.17796 * 359.72483 * 22 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.08004 * 126.91483 * 359.95495 * 11 10 9 28 28 H 1.09004 * 109.46987 * 244.99558 * 13 12 11 29 29 H 1.08991 * 109.47167 * 4.99567 * 13 12 11 30 30 H 1.08002 * 126.03932 * 0.04531 * 15 14 13 31 31 H 1.09007 * 115.55074 * 154.41661 * 18 17 16 32 32 H 1.08999 * 117.49442 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.50011 * 145.01974 * 19 18 17 34 34 H 1.09001 * 117.50028 * 214.98294 * 20 18 17 35 35 H 1.08999 * 117.49728 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2835 -4.6683 0.8733 12 7 3.3137 -5.4525 0.4801 13 6 3.7535 -6.6857 1.1375 14 6 3.7682 -7.8114 0.1357 15 6 4.8048 -8.0441 -0.6750 16 16 4.4087 -9.4402 -1.6744 17 6 2.8855 -9.5671 -0.9084 18 6 1.8433 -10.6077 -1.2279 19 6 2.2465 -11.7462 -2.1671 20 6 1.3000 -10.6477 -2.6575 21 7 2.7575 -8.6430 -0.0171 22 7 3.8403 -4.9294 -0.5715 23 7 3.2132 -3.8534 -0.8934 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 1.6346 -4.8272 1.7219 28 1 4.7565 -6.5449 1.5405 29 1 3.0672 -6.9298 1.9483 30 1 5.7234 -7.4774 -0.7106 31 1 1.1510 -10.8434 -0.4196 32 1 3.2654 -11.7422 -2.5543 33 1 1.8191 -12.7307 -1.9770 34 1 0.2503 -10.9099 -2.7898 35 1 1.6959 -9.9210 -3.3669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603237694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:59 Heat of formation + Delta-G solvation = 168.060802 kcal Electronic energy + Delta-G solvation = -19364.402057 eV Core-core repulsion = 16299.631854 eV Total energy + Delta-G solvation = -3064.770202 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 3.38 seconds Orbital eigenvalues (eV) -42.49567 -40.18226 -37.62528 -34.62532 -33.15001 -31.02263 -30.84105 -27.76755 -27.17910 -25.82310 -23.37346 -22.89790 -22.14209 -21.12747 -20.43364 -19.79825 -17.85122 -16.91369 -16.55985 -16.20968 -15.85405 -15.04922 -14.60253 -14.47202 -14.24481 -13.93537 -13.65541 -13.16547 -12.62983 -12.54695 -12.11456 -12.06445 -11.70008 -11.56848 -11.26082 -11.00703 -10.96894 -10.70449 -10.63010 -10.06683 -9.93752 -9.67458 -9.61439 -9.43246 -9.25433 -9.01052 -8.40479 -8.08822 -5.96253 -3.96562 0.39055 1.03713 1.41331 2.11898 2.32091 3.09384 3.36515 3.37108 3.43547 3.48533 3.56108 3.58317 4.27063 4.34932 4.47101 4.53815 4.68568 4.77624 4.98675 5.07887 5.15756 5.22472 5.30600 5.39272 5.41186 5.55689 5.62065 5.76143 5.89728 6.12245 6.34440 7.16402 7.20081 7.45480 7.57138 7.66251 8.01779 8.40644 9.07157 9.33972 9.66047 11.14969 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.003067 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.185825 B = 9127.626869 C = 9486.150311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.092 3.908 10 C 0.034 3.966 11 C -0.075 4.075 12 N -0.303 5.303 13 C 0.200 3.800 14 C 0.045 3.955 15 C -0.216 4.216 16 S 0.133 5.867 17 C 0.078 3.922 18 C -0.086 4.086 19 C -0.169 4.169 20 C -0.159 4.159 21 N -0.458 5.458 22 N -0.108 5.108 23 N -0.260 5.260 24 H 0.260 0.740 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.182 0.818 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.184 0.816 31 H 0.134 0.866 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.480 -25.911 -0.006 26.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.053 3.947 10 C -0.103 4.103 11 C -0.223 4.223 12 N -0.098 5.098 13 C 0.076 3.924 14 C -0.088 4.088 15 C -0.356 4.356 16 S 0.389 5.611 17 C -0.201 4.201 18 C -0.108 4.108 19 C -0.207 4.207 20 C -0.198 4.198 21 N -0.172 5.172 22 N -0.087 5.087 23 N -0.127 5.127 24 H 0.070 0.930 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.199 0.801 28 H 0.128 0.872 29 H 0.136 0.864 30 H 0.202 0.798 31 H 0.152 0.848 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.486 -26.456 -1.531 27.537 hybrid contribution -0.381 1.677 1.585 2.339 sum 7.105 -24.779 0.054 25.777 Atomic orbital electron populations 1.69962 1.05968 1.26609 1.51277 1.24981 0.94877 0.99228 0.95407 0.86460 0.80204 0.83477 0.77462 1.19714 1.20966 1.21106 1.21092 0.93273 0.89759 1.49890 0.92241 1.17727 0.90875 0.87566 0.98494 1.23006 0.97894 0.97750 0.91680 1.23378 0.97182 0.95740 1.06006 1.47073 1.22961 1.18696 1.21112 1.20177 1.03386 0.77006 0.91865 1.19920 0.89680 0.98133 1.01037 1.26982 1.05675 1.02125 1.00866 1.83845 1.12855 1.25752 1.38669 1.26039 0.98110 0.98941 0.96966 1.20407 0.98698 0.95819 0.95863 1.23160 1.00864 0.94480 1.02165 1.23179 1.00409 1.01416 0.94767 1.65897 1.28491 1.03906 1.18912 1.78150 1.21851 1.07051 1.01605 1.75063 1.07028 1.07245 1.23383 0.92998 0.94524 0.94364 0.80072 0.87165 0.86385 0.79847 0.84821 0.88355 0.87160 0.87262 0.88116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 4 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.50 -14.73 9.09 -34.44 -0.31 -15.04 16 8 H 0.06 1.78 7.74 -52.49 -0.41 1.38 16 9 C 0.09 2.47 5.55 -29.03 -0.16 2.31 16 10 C 0.03 0.80 6.44 -82.78 -0.53 0.27 16 11 C -0.07 -1.43 11.49 -17.05 -0.20 -1.63 16 12 N -0.30 -5.30 3.43 -62.44 -0.21 -5.51 16 13 C 0.20 2.45 6.87 -5.19 -0.04 2.41 16 14 C 0.04 0.57 6.11 -84.23 -0.51 0.06 16 15 C -0.22 -2.46 11.14 29.12 0.32 -2.14 16 16 S 0.13 1.29 21.94 -107.50 -2.36 -1.07 16 17 C 0.08 0.87 7.04 -13.46 -0.09 0.78 16 18 C -0.09 -0.74 6.33 -91.78 -0.58 -1.32 16 19 C -0.17 -1.01 10.02 -26.70 -0.27 -1.27 16 20 C -0.16 -1.15 10.24 -26.70 -0.27 -1.43 16 21 N -0.46 -6.20 10.53 -8.06 -0.08 -6.28 16 22 N -0.11 -2.26 12.92 60.35 0.78 -1.48 16 23 N -0.26 -6.38 12.40 33.29 0.41 -5.97 16 24 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 25 H 0.04 0.97 8.12 -51.93 -0.42 0.55 16 26 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 27 H 0.18 2.80 8.06 -52.48 -0.42 2.38 16 28 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.12 1.18 8.07 -51.93 -0.42 0.77 16 30 H 0.18 1.81 8.06 -52.49 -0.42 1.38 16 31 H 0.13 1.06 8.14 -51.92 -0.42 0.64 16 32 H 0.10 0.56 7.23 -51.93 -0.38 0.19 16 33 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 325.56 15.07 4.91 4.91 Total: -1.00 -35.35 325.56 -7.72 -43.08 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -4.14 Total: -3.27 kcal Atomic # 6 Polarization: -12.72 SS G_CDS: -2.74 Total: -15.46 kcal Atomic # 7 Polarization: -47.17 SS G_CDS: 1.63 Total: -45.54 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -2.36 Total: -1.07 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -35.35 -7.72 -43.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603237694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.138 kcal (2) G-P(sol) polarization free energy of solvation -35.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.38 seconds