Wall clock time and date at job start Tue Mar 31 2020 06:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35341 * 126.75090 * 125.00400 * 10 9 7 12 12 N 1.35312 * 106.17598 * 179.97438 * 11 10 9 13 13 C 1.46503 * 125.86851 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.47269 * 124.99868 * 13 12 11 15 15 C 1.33641 * 122.74875 * 84.70430 * 14 13 12 16 16 S 1.76197 * 107.92309 * 179.97438 * 15 14 13 17 17 C 1.70975 * 90.28359 * 0.27496 * 16 15 14 18 18 C 1.50696 * 124.91620 * 179.84135 * 17 16 15 19 19 C 1.52998 * 117.50212 * 8.74985 * 18 17 16 20 20 C 1.52992 * 117.50129 * 300.08703 * 18 17 16 21 21 N 1.29024 * 110.16445 * 359.83893 * 17 16 15 22 22 N 1.28713 * 108.26343 * 359.97438 * 12 11 10 23 23 N 1.28637 * 110.17796 * 359.72483 * 22 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.08004 * 126.91483 * 359.95495 * 11 10 9 28 28 H 1.09004 * 109.46987 * 244.99558 * 13 12 11 29 29 H 1.08991 * 109.47167 * 4.99567 * 13 12 11 30 30 H 1.08002 * 126.03932 * 0.04531 * 15 14 13 31 31 H 1.09007 * 115.55074 * 154.41661 * 18 17 16 32 32 H 1.08999 * 117.49442 * 359.97438 * 19 18 17 33 33 H 1.08996 * 117.50011 * 145.01974 * 19 18 17 34 34 H 1.09001 * 117.50028 * 214.98294 * 20 18 17 35 35 H 1.08999 * 117.49728 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2835 -4.6683 0.8733 12 7 3.3137 -5.4525 0.4801 13 6 3.7535 -6.6857 1.1375 14 6 3.7682 -7.8114 0.1357 15 6 4.8048 -8.0441 -0.6750 16 16 4.4087 -9.4402 -1.6744 17 6 2.8855 -9.5671 -0.9084 18 6 1.8433 -10.6077 -1.2279 19 6 2.2465 -11.7462 -2.1671 20 6 1.3000 -10.6477 -2.6575 21 7 2.7575 -8.6430 -0.0171 22 7 3.8403 -4.9294 -0.5715 23 7 3.2132 -3.8534 -0.8934 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 1.6346 -4.8272 1.7219 28 1 4.7565 -6.5449 1.5405 29 1 3.0672 -6.9298 1.9483 30 1 5.7234 -7.4774 -0.7106 31 1 1.1510 -10.8434 -0.4196 32 1 3.2654 -11.7422 -2.5543 33 1 1.8191 -12.7307 -1.9770 34 1 0.2503 -10.9099 -2.7898 35 1 1.6959 -9.9210 -3.3669 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603237694.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:53 Heat of formation + Delta-G solvation = 144.843416 kcal Electronic energy + Delta-G solvation = -19365.408838 eV Core-core repulsion = 16299.631854 eV Total energy + Delta-G solvation = -3065.776984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = -2.56 seconds Orbital eigenvalues (eV) -44.07559 -41.05443 -38.24033 -36.13762 -35.10574 -32.89889 -31.91323 -29.43784 -28.53595 -26.66436 -25.46048 -23.42623 -23.25942 -22.44796 -21.73598 -20.82771 -18.77741 -18.53240 -18.06033 -17.46615 -17.04579 -16.54644 -15.86945 -15.64054 -15.39266 -15.00963 -14.69040 -14.43545 -14.34202 -13.89551 -13.64528 -13.25726 -12.91965 -12.67196 -12.66397 -12.51528 -12.33494 -11.97039 -11.84166 -11.68052 -11.55040 -11.39216 -10.94551 -10.77194 -10.58936 -10.43804 -9.89597 -9.79992 -8.19065 -6.27925 -0.45292 0.23520 0.54465 0.77399 1.14620 1.39862 1.41234 1.54607 1.75370 2.00454 2.44415 2.65222 2.93246 3.13574 3.43891 3.68012 3.75483 3.82846 3.94033 4.06686 4.22427 4.23173 4.32597 4.41783 4.46031 4.68101 4.76524 4.82131 4.96401 5.03464 5.12677 5.28025 5.43023 5.52689 5.76509 5.77562 6.21626 6.60390 6.80548 7.38755 7.68969 8.92289 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.030857 B = 0.003067 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.185825 B = 9127.626869 C = 9486.150311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.522 4.522 8 H 0.045 0.955 9 C 0.103 3.897 10 C -0.007 4.007 11 C -0.049 4.049 12 N -0.283 5.283 13 C 0.190 3.810 14 C 0.025 3.975 15 C -0.230 4.230 16 S 0.177 5.823 17 C 0.065 3.935 18 C -0.108 4.108 19 C -0.146 4.146 20 C -0.164 4.164 21 N -0.491 5.491 22 N -0.110 5.110 23 N -0.307 5.307 24 H 0.266 0.734 25 H 0.033 0.967 26 H 0.005 0.995 27 H 0.221 0.779 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.196 0.804 31 H 0.136 0.864 32 H 0.101 0.899 33 H 0.134 0.866 34 H 0.123 0.877 35 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.404 -27.450 0.666 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.560 4.560 8 H 0.064 0.936 9 C 0.064 3.936 10 C -0.145 4.145 11 C -0.199 4.199 12 N -0.079 5.079 13 C 0.068 3.932 14 C -0.107 4.107 15 C -0.370 4.370 16 S 0.434 5.566 17 C -0.213 4.213 18 C -0.130 4.130 19 C -0.184 4.184 20 C -0.203 4.203 21 N -0.206 5.206 22 N -0.089 5.089 23 N -0.174 5.174 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.023 0.977 27 H 0.238 0.762 28 H 0.160 0.840 29 H 0.162 0.838 30 H 0.213 0.787 31 H 0.154 0.846 32 H 0.120 0.880 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.433 -28.035 -0.864 29.289 hybrid contribution -0.649 1.960 1.359 2.472 sum 7.783 -26.075 0.495 27.216 Atomic orbital electron populations 1.70057 1.07323 1.27869 1.51572 1.25826 0.95811 1.02781 0.94711 0.85412 0.78609 0.78984 0.78104 1.19757 1.20236 1.19544 1.21302 0.92796 0.91427 1.50502 0.93627 1.17380 0.91080 0.88470 0.96657 1.22640 0.98750 0.98985 0.94152 1.23739 0.96878 0.93909 1.05346 1.47463 1.21445 1.19298 1.19698 1.20762 1.05820 0.74648 0.91998 1.19998 0.90197 0.98617 1.01909 1.27282 1.05954 1.02919 1.00886 1.83635 1.11355 1.24349 1.37294 1.26556 0.99318 0.98864 0.96526 1.20572 0.99033 0.96790 0.96631 1.23285 1.00810 0.94703 0.99562 1.23254 1.01598 1.01950 0.93455 1.65923 1.29296 1.04952 1.20414 1.78015 1.21770 1.06319 1.02822 1.74973 1.08199 1.09193 1.25024 0.92486 0.94850 0.97666 0.76222 0.83990 0.83844 0.78729 0.84589 0.88020 0.84815 0.85915 0.89308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.31 16 2 C 0.01 0.40 5.46 84.66 0.46 0.86 16 3 Si 0.96 46.23 29.54 68.60 2.03 48.26 16 4 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 5 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 7 C -0.52 -31.48 9.09 25.60 0.23 -31.24 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.10 5.74 5.55 29.10 0.16 5.90 16 10 C -0.01 -0.36 6.44 41.59 0.27 -0.09 16 11 C -0.05 -1.82 11.49 83.49 0.96 -0.86 16 12 N -0.28 -9.50 3.43 -351.47 -1.21 -10.71 16 13 C 0.19 4.17 6.87 85.63 0.59 4.76 16 14 C 0.03 0.60 6.11 41.52 0.25 0.86 16 15 C -0.23 -4.89 11.14 66.78 0.74 -4.14 16 16 S 0.18 3.15 21.94 -56.49 -1.24 1.91 16 17 C 0.06 1.38 7.04 88.52 0.62 2.01 16 18 C -0.11 -1.70 6.33 -11.54 -0.07 -1.78 16 19 C -0.15 -1.39 10.02 30.62 0.31 -1.08 16 20 C -0.16 -2.14 10.24 30.62 0.31 -1.82 16 21 N -0.49 -12.73 10.53 -179.41 -1.89 -14.62 16 22 N -0.11 -4.58 12.92 37.02 0.48 -4.10 16 23 N -0.31 -15.41 12.40 -48.60 -0.60 -16.01 16 24 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 25 H 0.03 1.83 8.12 -2.38 -0.02 1.81 16 26 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 27 H 0.22 6.21 8.06 -2.91 -0.02 6.18 16 28 H 0.14 2.24 8.14 -2.38 -0.02 2.22 16 29 H 0.14 2.43 8.07 -2.39 -0.02 2.41 16 30 H 0.20 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.14 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.10 0.91 7.23 -2.39 -0.02 0.89 16 33 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -78.39 325.56 3.80 -74.59 By element: Atomic # 1 Polarization: 2.52 SS G_CDS: 1.11 Total: 3.63 kcal Atomic # 6 Polarization: -31.47 SS G_CDS: 4.84 Total: -26.63 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -2.93 Total: -101.76 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.24 Total: 1.91 kcal Total: -78.39 3.80 -74.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603237694.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.434 kcal (2) G-P(sol) polarization free energy of solvation -78.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -2.56 seconds