Wall clock time and date at job start Tue Mar 31 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 S 1.81402 * 109.47089 * 89.99833 * 13 12 11 15 15 C 1.81397 * 102.99865 * 179.97438 * 14 13 12 16 16 C 1.53009 * 109.47170 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47129 * 180.02562 * 16 15 14 18 18 N 1.33321 * 126.54794 * 269.68573 * 17 16 15 19 19 N 1.28991 * 107.35355 * 179.83916 * 18 17 16 20 20 N 1.28782 * 108.72894 * 0.43230 * 19 18 17 21 21 H 0.97000 * 125.45058 * 179.73499 * 20 19 18 22 22 N 1.28881 * 109.09824 * 359.72546 * 20 19 18 23 23 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 24 24 C 1.37614 * 120.25107 * 359.44663 * 23 12 11 25 25 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 28 28 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 29 29 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 30 30 H 1.09002 * 109.47254 * 300.00139 * 15 14 13 31 31 H 1.09002 * 109.47435 * 60.00647 * 15 14 13 32 32 H 1.09002 * 109.47067 * 300.00158 * 16 15 14 33 33 H 1.08996 * 109.46763 * 59.99656 * 16 15 14 34 34 H 1.08003 * 119.87291 * 179.69838 * 23 12 11 35 35 H 1.08002 * 120.12976 * 180.27263 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 16 0.0961 -6.6672 3.0304 15 6 -0.8632 -8.1750 3.3415 16 6 -0.3590 -8.8453 4.6212 17 6 -1.1555 -10.0982 4.8793 18 7 -2.2767 -10.1930 5.5945 19 7 -2.6446 -11.4291 5.5710 20 7 -1.7918 -12.1014 4.8787 21 1 -1.8327 -13.0554 4.7081 22 7 -0.8754 -11.3037 4.4486 23 6 -0.4120 -3.5333 1.5634 24 6 0.2229 -2.3640 1.2121 25 1 -0.4850 0.8401 -0.0004 26 1 2.6869 -3.6941 -0.7378 27 1 1.5339 -5.7607 -0.0797 28 1 -1.6958 -5.8233 1.6614 29 1 -0.5250 -6.7642 0.7063 30 1 -1.9163 -7.9183 3.4569 31 1 -0.7460 -8.8600 2.5018 32 1 0.6942 -9.1019 4.5063 33 1 -0.4764 -8.1602 5.4607 34 1 -1.2815 -3.5021 2.2032 35 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603338540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:46 Heat of formation + Delta-G solvation = 124.447665 kcal Electronic energy + Delta-G solvation = -18616.455190 eV Core-core repulsion = 15549.793780 eV Total energy + Delta-G solvation = -3066.661410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.75501 -37.64433 -35.38823 -34.23440 -34.02687 -31.59172 -31.25222 -29.33715 -27.60400 -25.38464 -24.78471 -23.87556 -21.94862 -21.04212 -20.03154 -19.42902 -17.42010 -17.35415 -16.03412 -15.41545 -15.31414 -14.87243 -14.38252 -14.20247 -13.87081 -13.83429 -13.05402 -12.89587 -12.57705 -12.36719 -12.16078 -11.97946 -11.64801 -11.59274 -11.52569 -11.24254 -11.08671 -10.96271 -10.73993 -10.60745 -10.34798 -9.78456 -9.58423 -9.44256 -9.14962 -7.52075 -7.33703 -7.26041 -6.83739 -4.40540 0.83503 1.61068 1.91197 2.07863 2.71518 2.97548 3.03769 3.05727 3.10136 3.36439 3.69313 3.88353 4.03193 4.58765 4.78998 4.87872 5.08708 5.28674 5.46605 5.56885 5.62159 5.65182 5.77220 5.79693 6.11938 6.15002 6.30564 6.35876 6.91095 7.00492 7.21713 7.29866 7.55760 7.78505 7.93995 7.99518 8.04573 8.22980 8.57449 8.82107 8.90551 10.10022 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.054574 B = 0.002355 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.938040 B =11884.474365 C =12051.286306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.075 3.925 3 Si 0.909 3.091 4 H -0.270 1.270 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.455 4.455 8 H 0.080 0.920 9 C 0.117 3.883 10 C -0.228 4.228 11 C -0.066 4.066 12 C -0.212 4.212 13 C 0.000 4.000 14 S -0.265 6.265 15 C -0.095 4.095 16 C -0.006 4.006 17 C 0.184 3.816 18 N -0.272 5.272 19 N -0.054 5.054 20 N -0.232 5.232 21 H 0.474 0.526 22 N -0.298 5.298 23 C -0.077 4.077 24 C -0.168 4.168 25 H 0.282 0.718 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.071 0.929 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.104 0.896 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.950 -16.725 6.492 18.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.485 4.485 8 H 0.098 0.902 9 C 0.114 3.886 10 C -0.248 4.248 11 C -0.086 4.086 12 C -0.216 4.216 13 C -0.146 4.146 14 S -0.034 6.034 15 C -0.244 4.244 16 C -0.047 4.047 17 C -0.101 4.101 18 N -0.146 5.146 19 N -0.050 5.050 20 N -0.078 5.078 21 H 0.327 0.673 22 N -0.150 5.150 23 C -0.097 4.097 24 C -0.187 4.187 25 H 0.093 0.907 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.097 0.903 32 H 0.122 0.878 33 H 0.126 0.874 34 H 0.108 0.892 35 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.839 -16.524 7.379 18.318 hybrid contribution -0.432 -0.203 -1.115 1.213 sum -3.271 -16.726 6.264 18.158 Atomic orbital electron populations 1.69823 1.07668 1.29442 1.34224 1.25962 0.94757 1.01503 0.92144 0.86291 0.80828 0.80511 0.79108 1.19517 1.19937 1.18307 1.19667 0.98181 0.91248 1.39367 0.90227 1.17676 0.90885 0.92066 0.88005 1.20952 1.03897 0.92822 1.07153 1.20365 0.94660 0.96574 0.97009 1.18372 1.02340 0.91224 1.09660 1.21990 1.00160 0.98657 0.93841 1.87343 1.51722 1.26988 1.37390 1.23242 1.02771 0.99080 0.99348 1.19689 0.98150 0.88107 0.98749 1.25729 0.94164 0.94262 0.95921 1.75930 1.11894 1.08089 1.18640 1.78966 1.15405 0.99309 1.11307 1.47815 1.13914 1.13553 1.32549 0.67256 1.74754 1.15635 1.02169 1.22401 1.20523 0.98243 0.92458 0.98510 1.21291 0.99377 0.96759 1.01311 0.90700 0.88812 0.89277 0.91071 0.91224 0.90056 0.90325 0.87805 0.87408 0.89246 0.86341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.88 10.97 55.55 0.61 -19.27 16 2 C 0.08 1.84 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.22 29.59 -169.99 -5.03 13.19 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 6 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 7 C -0.46 -11.83 9.05 -37.74 -0.34 -12.17 16 8 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 9 C 0.12 3.07 5.57 -106.83 -0.60 2.47 16 10 C -0.23 -5.52 9.80 -38.88 -0.38 -5.90 16 11 C -0.07 -1.45 9.67 -39.66 -0.38 -1.84 16 12 C -0.21 -4.53 5.16 -104.33 -0.54 -5.06 16 13 C 0.00 0.00 6.06 36.00 0.22 0.22 16 14 S -0.27 -4.24 21.72 -107.50 -2.33 -6.57 16 15 C -0.09 -1.14 5.92 37.16 0.22 -0.92 16 16 C -0.01 -0.06 5.85 -27.88 -0.16 -0.22 16 17 C 0.18 2.03 7.62 -156.62 -1.19 0.83 16 18 N -0.27 -3.30 12.50 32.44 0.41 -2.90 16 19 N -0.05 -0.56 13.48 60.35 0.81 0.26 16 20 N -0.23 -1.72 7.91 60.34 0.48 -1.25 16 21 H 0.47 1.19 8.96 -340.53 -3.05 -1.86 16 22 N -0.30 -2.94 12.36 32.46 0.40 -2.54 16 23 C -0.08 -1.78 9.67 -39.66 -0.38 -2.16 16 24 C -0.17 -4.29 8.70 -38.87 -0.34 -4.63 16 25 H 0.28 6.45 8.30 -40.82 -0.34 6.11 16 26 H 0.09 2.13 8.06 -52.49 -0.42 1.71 16 27 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 28 H 0.07 1.16 8.08 -51.92 -0.42 0.74 16 29 H 0.07 1.11 8.08 -51.93 -0.42 0.69 16 30 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 31 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 32 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 35 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 LS Contribution 322.31 15.07 4.86 4.86 Total: -1.00 -29.20 322.31 -10.49 -39.69 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -6.72 Total: 2.15 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -3.97 Total: -27.62 kcal Atomic # 7 Polarization: -28.40 SS G_CDS: 2.71 Total: -25.69 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.03 Total: 13.19 kcal Atomic # 16 Polarization: -4.24 SS G_CDS: -2.33 Total: -6.57 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.20 -10.49 -39.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603338540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.141 kcal (2) G-P(sol) polarization free energy of solvation -29.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds