Wall clock time and date at job start Tue Mar 31 2020 06:33:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30818 * 1 3 3 Si 1.86797 * 120.00226 * 2 1 4 4 H 1.48500 * 109.47048 * 274.66471 * 3 2 1 5 5 H 1.48498 * 109.47252 * 34.66428 * 3 2 1 6 6 H 1.48496 * 109.47461 * 154.66416 * 3 2 1 7 7 C 1.39951 * 119.99753 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99385 * 162.23207 * 7 2 1 9 9 C 1.41395 * 120.00207 * 342.22830 * 7 2 1 10 10 C 1.40707 * 120.24267 * 155.28681 * 9 7 2 11 11 C 1.37619 * 119.74375 * 180.02562 * 10 9 7 12 12 C 1.38639 * 120.24888 * 0.02865 * 11 10 9 13 13 C 1.50698 * 119.74967 * 179.97438 * 12 11 10 14 14 S 1.81402 * 109.47089 * 89.99833 * 13 12 11 15 15 C 1.81397 * 102.99865 * 179.97438 * 14 13 12 16 16 C 1.53009 * 109.47170 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.47129 * 180.02562 * 16 15 14 18 18 N 1.33321 * 126.54794 * 269.68573 * 17 16 15 19 19 N 1.28991 * 107.35355 * 179.83916 * 18 17 16 20 20 N 1.28782 * 108.72894 * 0.43230 * 19 18 17 21 21 H 0.97000 * 125.45058 * 179.73499 * 20 19 18 22 22 N 1.28881 * 109.09824 * 359.72546 * 20 19 18 23 23 C 1.38635 * 120.49782 * 0.24803 * 12 11 10 24 24 C 1.37614 * 120.25107 * 359.44663 * 23 12 11 25 25 H 0.97004 * 119.99893 * 0.02562 * 1 2 3 26 26 H 1.07997 * 120.13074 * 0.02562 * 10 9 7 27 27 H 1.08000 * 119.87621 * 180.02562 * 11 10 9 28 28 H 1.08998 * 109.47087 * 209.99875 * 13 12 11 29 29 H 1.08994 * 109.47038 * 330.00134 * 13 12 11 30 30 H 1.09002 * 109.47254 * 300.00139 * 15 14 13 31 31 H 1.09002 * 109.47435 * 60.00647 * 15 14 13 32 32 H 1.09002 * 109.47067 * 300.00158 * 16 15 14 33 33 H 1.08996 * 109.46763 * 59.99656 * 16 15 14 34 34 H 1.08003 * 119.87291 * 179.69838 * 23 12 11 35 35 H 1.08002 * 120.12976 * 180.27263 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3911 2.1033 -1.3954 5 1 1.4925 2.6222 0.7963 6 1 3.5856 1.4137 0.5991 7 6 2.0079 -1.2120 -0.0005 8 1 3.0493 -1.2341 -0.2860 9 6 1.3515 -2.4075 0.3727 10 6 1.8217 -3.6492 -0.0930 11 6 1.1746 -4.8064 0.2762 12 6 0.0633 -4.7517 1.1032 13 6 -0.6370 -6.0257 1.5001 14 16 0.0961 -6.6672 3.0304 15 6 -0.8632 -8.1750 3.3415 16 6 -0.3590 -8.8453 4.6212 17 6 -1.1555 -10.0982 4.8793 18 7 -2.2767 -10.1930 5.5945 19 7 -2.6446 -11.4291 5.5710 20 7 -1.7918 -12.1014 4.8787 21 1 -1.8327 -13.0554 4.7081 22 7 -0.8754 -11.3037 4.4486 23 6 -0.4120 -3.5333 1.5634 24 6 0.2229 -2.3640 1.2121 25 1 -0.4850 0.8401 -0.0004 26 1 2.6869 -3.6941 -0.7378 27 1 1.5339 -5.7607 -0.0797 28 1 -1.6958 -5.8233 1.6614 29 1 -0.5250 -6.7642 0.7063 30 1 -1.9163 -7.9183 3.4569 31 1 -0.7460 -8.8600 2.5018 32 1 0.6942 -9.1019 4.5063 33 1 -0.4764 -8.1602 5.4607 34 1 -1.2815 -3.5021 2.2032 35 1 -0.1465 -1.4163 1.5752 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603338540.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:46 Heat of formation + Delta-G solvation = 108.288130 kcal Electronic energy + Delta-G solvation = -18617.155920 eV Core-core repulsion = 15549.793780 eV Total energy + Delta-G solvation = -3067.362140 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.51384 -39.45575 -36.20165 -35.82841 -35.01885 -32.99179 -32.42458 -31.17713 -29.30773 -26.40768 -25.62194 -25.42329 -22.90803 -22.79685 -21.77274 -20.14147 -19.22171 -18.20539 -17.29984 -17.03744 -16.35281 -15.99640 -15.91748 -15.62443 -15.52653 -14.98292 -14.42741 -13.96227 -13.91720 -13.80289 -13.68322 -13.39563 -13.24945 -12.74298 -12.63483 -12.47073 -12.37683 -12.33529 -12.05247 -12.04489 -11.53968 -11.35505 -11.27035 -11.02996 -10.80137 -9.36053 -9.16848 -8.65119 -8.53507 -6.32646 0.09206 0.39019 0.96352 1.15124 1.21089 1.39499 1.47969 1.53516 1.58254 1.86152 2.21371 2.76582 2.90266 3.25573 3.76640 3.87931 3.99582 4.17048 4.18751 4.26867 4.50231 4.54452 4.59025 4.61579 4.73481 4.80647 4.95324 5.05954 5.15652 5.36229 5.45179 5.63630 5.70671 5.94905 6.10443 6.20442 6.37864 6.69631 6.93366 7.02701 7.17177 8.31735 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.054574 B = 0.002355 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.938040 B =11884.474365 C =12051.286306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.496 4.496 8 H 0.076 0.924 9 C 0.083 3.917 10 C -0.245 4.245 11 C -0.070 4.070 12 C -0.200 4.200 13 C 0.000 4.000 14 S -0.286 6.286 15 C -0.075 4.075 16 C -0.001 4.001 17 C 0.177 3.823 18 N -0.301 5.301 19 N -0.062 5.062 20 N -0.204 5.204 21 H 0.493 0.507 22 N -0.300 5.300 23 C -0.084 4.084 24 C -0.192 4.192 25 H 0.289 0.711 26 H 0.099 0.901 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.150 -18.762 6.925 20.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C -0.181 4.181 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.526 4.526 8 H 0.095 0.905 9 C 0.081 3.919 10 C -0.264 4.264 11 C -0.089 4.089 12 C -0.203 4.203 13 C -0.147 4.147 14 S -0.056 6.056 15 C -0.225 4.225 16 C -0.042 4.042 17 C -0.108 4.108 18 N -0.174 5.174 19 N -0.057 5.057 20 N -0.055 5.055 21 H 0.351 0.649 22 N -0.152 5.152 23 C -0.104 4.104 24 C -0.212 4.212 25 H 0.100 0.900 26 H 0.117 0.883 27 H 0.136 0.864 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.045 -18.572 7.797 20.371 hybrid contribution -0.462 0.075 -1.169 1.260 sum -3.508 -18.497 6.628 19.960 Atomic orbital electron populations 1.69872 1.09027 1.30663 1.35140 1.26787 0.95516 1.04598 0.91186 0.85197 0.79206 0.75937 0.79422 1.18628 1.19001 1.18287 1.19883 0.98385 0.92533 1.41769 0.90537 1.18013 0.91775 0.93174 0.88986 1.21169 1.04546 0.93135 1.07595 1.20684 0.94542 0.97031 0.96680 1.18753 1.01371 0.92462 1.07704 1.21916 1.00331 0.97172 0.95272 1.87349 1.52451 1.29719 1.36099 1.23193 1.01984 0.96763 1.00518 1.19615 0.98560 0.88065 0.97983 1.25688 0.94139 0.94639 0.96296 1.75919 1.12701 1.09016 1.19721 1.78917 1.15845 0.99093 1.11844 1.47873 1.12530 1.14341 1.30755 0.64865 1.74727 1.16042 1.02059 1.22407 1.20758 0.98594 0.92450 0.98631 1.21259 1.00329 0.97074 1.02513 0.90031 0.88309 0.86383 0.89896 0.89246 0.89765 0.89278 0.86884 0.87207 0.87642 0.88150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.99 10.97 21.83 0.24 -42.75 16 2 C 0.03 1.75 5.14 85.26 0.44 2.18 16 3 Si 0.98 38.17 29.59 68.60 2.03 40.20 16 4 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 5 H -0.27 -9.82 7.11 99.48 0.71 -9.12 16 6 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 7 C -0.50 -26.92 9.05 23.46 0.21 -26.71 16 8 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 9 C 0.08 4.55 5.57 -21.29 -0.12 4.43 16 10 C -0.24 -12.04 9.80 22.73 0.22 -11.81 16 11 C -0.07 -3.00 9.67 22.22 0.21 -2.78 16 12 C -0.20 -8.29 5.16 -19.67 -0.10 -8.39 16 13 C 0.00 0.00 6.06 71.24 0.43 0.43 16 14 S -0.29 -8.43 21.72 -56.49 -1.23 -9.66 16 15 C -0.08 -1.58 5.92 71.99 0.43 -1.15 16 16 C 0.00 -0.02 5.85 29.85 0.17 0.16 16 17 C 0.18 3.48 7.62 138.55 1.06 4.54 16 18 N -0.30 -6.73 12.50 -51.27 -0.64 -7.37 16 19 N -0.06 -1.13 13.48 37.02 0.50 -0.63 16 20 N -0.20 -2.48 7.91 37.00 0.29 -2.19 16 21 H 0.49 1.06 8.96 -347.67 -3.12 -2.06 16 22 N -0.30 -5.08 12.36 -51.20 -0.63 -5.71 16 23 C -0.08 -3.90 9.67 22.22 0.21 -3.68 16 24 C -0.19 -10.19 8.70 22.73 0.20 -9.99 16 25 H 0.29 13.61 8.30 -92.71 -0.77 12.84 16 26 H 0.10 4.59 8.06 -2.91 -0.02 4.57 16 27 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 28 H 0.08 2.47 8.08 -2.39 -0.02 2.45 16 29 H 0.09 2.53 8.08 -2.39 -0.02 2.51 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.11 4.41 8.06 -2.91 -0.02 4.38 16 35 H 0.10 5.58 6.18 -2.91 -0.02 5.56 16 Total: -1.00 -64.36 322.31 1.94 -62.42 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -1.99 Total: 18.48 kcal Atomic # 6 Polarization: -56.15 SS G_CDS: 3.37 Total: -52.79 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: -0.24 Total: -58.66 kcal Atomic # 14 Polarization: 38.17 SS G_CDS: 2.03 Total: 40.20 kcal Atomic # 16 Polarization: -8.43 SS G_CDS: -1.23 Total: -9.66 kcal Total: -64.36 1.94 -62.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603338540.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.709 kcal (2) G-P(sol) polarization free energy of solvation -64.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds