Wall clock time and date at job start Tue Mar 31 2020 08:17:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48493 * 109.46990 * 239.99953 * 3 2 1 5 5 H 1.48497 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46671 * 120.00130 * 3 2 1 7 7 C 1.37879 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47370 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47460 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47526 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00183 * 180.02562 * 12 11 10 14 14 O 1.21590 * 120.00257 * 359.97438 * 13 12 11 15 15 C 1.47520 * 119.99864 * 179.97438 * 13 12 11 16 16 C 1.40093 * 119.93319 * 359.97438 * 15 13 12 17 17 C 1.36295 * 120.38565 * 179.72376 * 16 15 13 18 18 C 1.39858 * 120.04237 * 0.25756 * 17 16 15 19 19 N 1.35812 * 133.51418 * 180.02562 * 18 17 16 20 20 C 1.30782 * 108.79267 * 180.02562 * 19 18 17 21 21 O 1.35106 * 124.91866 * 180.02562 * 20 19 18 22 22 O 1.34318 * 110.16079 * 359.97438 * 20 19 18 23 23 C 1.35313 * 108.12855 * 359.97438 * 22 20 19 24 24 C 1.38102 * 133.76950 * 179.97438 * 23 22 20 25 25 H 0.97006 * 120.00229 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46932 * 60.00422 * 9 7 2 27 27 H 1.08999 * 109.47572 * 300.00586 * 9 7 2 28 28 H 1.09002 * 109.46772 * 60.00295 * 10 9 7 29 29 H 1.08997 * 109.47559 * 300.00355 * 10 9 7 30 30 H 1.09002 * 109.47069 * 60.00253 * 11 10 9 31 31 H 1.08999 * 109.47345 * 300.00472 * 11 10 9 32 32 H 0.97003 * 119.99791 * 359.97438 * 12 11 10 33 33 H 1.08002 * 119.81069 * 0.02562 * 16 15 13 34 34 H 1.07997 * 119.98061 * 180.28145 * 17 16 15 35 35 H 0.96703 * 113.99974 * 359.97438 * 21 20 19 36 36 H 1.07996 * 120.17996 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 1.9831 -7.3713 -0.0015 14 8 0.7876 -7.5935 -0.0024 15 6 2.9417 -8.4925 -0.0014 16 6 4.3188 -8.2349 -0.0010 17 6 5.2126 -9.2637 0.0048 18 6 4.7579 -10.5863 0.0047 19 7 5.3852 -11.7909 0.0100 20 6 4.4818 -12.7365 0.0065 21 8 4.7485 -14.0609 0.0105 22 8 3.2503 -12.2001 -0.0004 23 6 3.3778 -10.8530 -0.0008 24 6 2.4750 -9.8080 -0.0068 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 0.8540 -5.0446 -0.8914 31 1 0.8533 -5.0451 0.8885 32 1 3.3860 -5.9233 -0.0002 33 1 4.6742 -7.2150 -0.0002 34 1 6.2727 -9.0576 0.0097 35 1 5.6921 -14.2721 0.0158 36 1 1.4136 -10.0074 -0.0123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609141841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:50 Heat of formation + Delta-G solvation = -42.485927 kcal Electronic energy + Delta-G solvation = -21138.210885 eV Core-core repulsion = 17589.265070 eV Total energy + Delta-G solvation = -3548.945816 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.76796 -40.08086 -38.84238 -37.70909 -35.54515 -34.98537 -33.40306 -31.50414 -31.15650 -29.85019 -26.82945 -24.59245 -24.10276 -22.94473 -22.37672 -21.01835 -20.47172 -19.46434 -18.61438 -18.09558 -17.70756 -16.72316 -16.17655 -15.81058 -15.40790 -15.14118 -14.59943 -14.39909 -14.38038 -14.32554 -13.91824 -13.64604 -13.23830 -12.86405 -12.30776 -12.01240 -11.84818 -11.82904 -11.40538 -11.02331 -10.90086 -10.76764 -10.65030 -10.10557 -9.89954 -9.44794 -9.34386 -9.15792 -8.95774 -8.64162 -8.38608 -6.03269 -4.06618 0.04172 0.74245 1.05811 1.75827 2.71743 2.93208 3.26773 3.31094 3.36150 3.38031 3.48995 3.90578 4.26430 4.42585 4.47994 4.59613 4.73248 4.83842 5.12734 5.32449 5.49162 5.54009 5.65561 5.72982 5.76672 5.81073 6.00432 6.11507 6.35354 6.37897 6.55297 6.76630 6.95885 7.07472 7.56663 7.61112 7.73469 7.94962 8.21739 8.36072 8.99776 9.57626 11.07884 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.049458 B = 0.002264 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.000832 B =12361.920488 C =12902.165290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.122 4.122 11 C 0.116 3.884 12 N -0.716 5.716 13 C 0.555 3.445 14 O -0.536 6.536 15 C -0.113 4.113 16 C -0.077 4.077 17 C -0.076 4.076 18 C 0.072 3.928 19 N -0.526 5.526 20 C 0.457 3.543 21 O -0.413 6.413 22 O -0.196 6.196 23 C -0.009 4.009 24 C -0.017 4.017 25 H 0.262 0.738 26 H 0.019 0.981 27 H 0.019 0.981 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.399 0.601 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.443 0.557 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.454 -25.023 0.007 27.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.160 4.160 11 C -0.007 4.007 12 N -0.367 5.367 13 C 0.342 3.658 14 O -0.414 6.414 15 C -0.117 4.117 16 C -0.097 4.097 17 C -0.095 4.095 18 C -0.041 4.041 19 N -0.277 5.277 20 C 0.208 3.792 21 O -0.214 6.214 22 O -0.090 6.090 23 C -0.058 4.058 24 C -0.036 4.036 25 H 0.072 0.928 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.234 0.766 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.303 0.697 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 11.399 -25.356 0.009 27.800 hybrid contribution 0.798 0.772 0.000 1.110 sum 12.196 -24.584 0.008 27.443 Atomic orbital electron populations 1.69951 1.06058 1.26835 1.50378 1.25033 0.94867 0.99317 0.95258 0.86636 0.79555 0.83081 0.78584 1.20239 1.21285 1.20246 1.21156 0.92954 0.90927 1.51161 0.92673 1.19026 0.93841 0.90799 0.97717 1.21905 0.99838 0.93232 1.00989 1.21729 0.91791 0.84785 1.02359 1.46114 1.11063 1.05588 1.73958 1.17892 0.87809 0.82818 0.77324 1.90809 1.16001 1.84742 1.49883 1.19754 0.93817 0.92629 1.05452 1.20984 0.91452 0.99922 0.97298 1.19912 1.01056 0.87614 1.00916 1.19653 0.89454 0.93158 1.01789 1.71170 1.29800 0.97807 1.28922 1.22323 0.78957 0.86360 0.91553 1.84660 1.35584 1.11797 1.89408 1.84393 1.29210 1.19325 1.76095 1.19775 0.96491 0.79858 1.09662 1.19855 0.99761 0.87365 0.96659 0.92846 0.96222 0.96233 0.92602 0.92609 0.91397 0.91403 0.76614 0.83764 0.83752 0.69696 0.83009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.50 13.29 55.43 0.74 -25.76 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 10 C -0.12 -2.26 5.27 -26.73 -0.14 -2.40 16 11 C 0.12 1.93 5.67 -4.04 -0.02 1.90 16 12 N -0.72 -9.55 5.50 -61.36 -0.34 -9.89 16 13 C 0.56 7.92 7.76 -12.48 -0.10 7.82 16 14 O -0.54 -9.67 16.33 5.29 0.09 -9.58 16 15 C -0.11 -1.28 5.88 -104.92 -0.62 -1.89 16 16 C -0.08 -0.66 9.46 -39.59 -0.37 -1.03 16 17 C -0.08 -0.65 10.03 -39.68 -0.40 -1.05 16 18 C 0.07 0.76 7.23 -84.62 -0.61 0.15 16 19 N -0.53 -5.19 11.36 -12.72 -0.14 -5.33 16 20 C 0.46 4.07 9.54 52.32 0.50 4.57 16 21 O -0.41 -2.12 13.62 -40.32 -0.55 -2.67 16 22 O -0.20 -2.16 10.79 -20.50 -0.22 -2.38 16 23 C -0.01 -0.10 7.41 -38.76 -0.29 -0.39 16 24 C -0.02 -0.19 9.60 -39.13 -0.38 -0.57 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 4.05 6.47 -40.82 -0.26 3.79 16 33 H 0.14 0.86 6.36 -52.49 -0.33 0.53 16 34 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.44 -0.18 9.06 45.56 0.41 0.23 16 36 H 0.15 1.72 7.64 -52.49 -0.40 1.32 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -34.68 321.62 -6.67 -41.34 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -3.09 Total: -1.17 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -2.98 Total: -5.58 kcal Atomic # 7 Polarization: -41.24 SS G_CDS: 0.25 Total: -40.99 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.68 Total: -14.63 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.68 -6.67 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.144 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds