Wall clock time and date at job start Tue Mar 31 2020 08:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 119.99846 * 2 1 4 4 H 1.48493 * 109.46990 * 239.99953 * 3 2 1 5 5 H 1.48497 * 109.46934 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46671 * 120.00130 * 3 2 1 7 7 C 1.37879 * 120.00123 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00014 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00033 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47370 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47460 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47526 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00183 * 180.02562 * 12 11 10 14 14 O 1.21590 * 120.00257 * 359.97438 * 13 12 11 15 15 C 1.47520 * 119.99864 * 179.97438 * 13 12 11 16 16 C 1.40093 * 119.93319 * 359.97438 * 15 13 12 17 17 C 1.36295 * 120.38565 * 179.72376 * 16 15 13 18 18 C 1.39858 * 120.04237 * 0.25756 * 17 16 15 19 19 N 1.35812 * 133.51418 * 180.02562 * 18 17 16 20 20 C 1.30782 * 108.79267 * 180.02562 * 19 18 17 21 21 O 1.35106 * 124.91866 * 180.02562 * 20 19 18 22 22 O 1.34318 * 110.16079 * 359.97438 * 20 19 18 23 23 C 1.35313 * 108.12855 * 359.97438 * 22 20 19 24 24 C 1.38102 * 133.76950 * 179.97438 * 23 22 20 25 25 H 0.97006 * 120.00229 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46932 * 60.00422 * 9 7 2 27 27 H 1.08999 * 109.47572 * 300.00586 * 9 7 2 28 28 H 1.09002 * 109.46772 * 60.00295 * 10 9 7 29 29 H 1.08997 * 109.47559 * 300.00355 * 10 9 7 30 30 H 1.09002 * 109.47069 * 60.00253 * 11 10 9 31 31 H 1.08999 * 109.47345 * 300.00472 * 11 10 9 32 32 H 0.97003 * 119.99791 * 359.97438 * 12 11 10 33 33 H 1.08002 * 119.81069 * 0.02562 * 16 15 13 34 34 H 1.07997 * 119.98061 * 180.28145 * 17 16 15 35 35 H 0.96703 * 113.99974 * 359.97438 * 21 20 19 36 36 H 1.07996 * 120.17996 * 0.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2124 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4323 -6.1006 -0.0006 13 6 1.9831 -7.3713 -0.0015 14 8 0.7876 -7.5935 -0.0024 15 6 2.9417 -8.4925 -0.0014 16 6 4.3188 -8.2349 -0.0010 17 6 5.2126 -9.2637 0.0048 18 6 4.7579 -10.5863 0.0047 19 7 5.3852 -11.7909 0.0100 20 6 4.4818 -12.7365 0.0065 21 8 4.7485 -14.0609 0.0105 22 8 3.2503 -12.2001 -0.0004 23 6 3.3778 -10.8530 -0.0008 24 6 2.4750 -9.8080 -0.0068 25 1 -0.4851 0.8401 -0.0004 26 1 0.6241 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.8719 -3.6043 0.8895 29 1 2.8720 -3.6043 -0.8904 30 1 0.8540 -5.0446 -0.8914 31 1 0.8533 -5.0451 0.8885 32 1 3.3860 -5.9233 -0.0002 33 1 4.6742 -7.2150 -0.0002 34 1 6.2727 -9.0576 0.0097 35 1 5.6921 -14.2721 0.0158 36 1 1.4136 -10.0074 -0.0123 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609141841.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:17:49 Heat of formation + Delta-G solvation = -71.379634 kcal Electronic energy + Delta-G solvation = -21139.463811 eV Core-core repulsion = 17589.265070 eV Total energy + Delta-G solvation = -3550.198741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -44.50815 -41.14377 -39.43467 -38.52738 -36.99677 -35.74408 -35.21854 -33.14658 -31.95187 -30.84511 -28.49324 -25.76009 -24.88605 -24.35295 -23.17490 -22.33048 -21.82272 -20.08974 -19.53437 -18.92704 -18.49451 -18.43585 -17.32747 -16.98634 -16.71495 -16.44330 -15.80733 -15.45172 -15.43147 -15.09447 -14.79220 -14.78713 -14.21722 -13.93923 -13.72474 -13.71965 -13.43953 -12.73973 -12.69656 -12.52227 -12.37860 -12.19197 -11.78949 -11.62775 -11.60109 -11.25091 -11.02961 -10.51727 -10.19113 -10.07578 -9.43503 -8.16532 -6.27717 -0.75994 0.00938 0.43935 0.97654 1.44238 1.47051 1.54741 1.78729 2.02575 2.37035 2.45261 2.60680 3.17360 3.18919 3.58436 3.65830 3.87251 3.91379 4.11138 4.23968 4.26129 4.51164 4.59355 4.77298 4.81576 4.98647 4.99037 5.04707 5.08054 5.21570 5.29471 5.40961 5.55921 5.75145 5.85768 5.87894 6.25237 6.48039 6.50156 6.90176 7.13698 7.41788 8.95212 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.049458 B = 0.002264 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.000832 B =12361.920488 C =12902.165290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.069 0.931 9 C 0.022 3.978 10 C -0.102 4.102 11 C 0.128 3.872 12 N -0.702 5.702 13 C 0.557 3.443 14 O -0.582 6.582 15 C -0.123 4.123 16 C -0.062 4.062 17 C -0.070 4.070 18 C 0.067 3.933 19 N -0.534 5.534 20 C 0.465 3.535 21 O -0.403 6.403 22 O -0.214 6.214 23 C -0.027 4.027 24 C -0.025 4.025 25 H 0.262 0.738 26 H -0.008 1.008 27 H -0.008 1.008 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.418 0.582 33 H 0.176 0.824 34 H 0.175 0.825 35 H 0.464 0.536 36 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.868 -25.290 0.012 29.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.203 4.203 3 Si 0.791 3.209 4 H -0.190 1.190 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.087 0.913 9 C -0.016 4.016 10 C -0.140 4.140 11 C 0.005 3.995 12 N -0.354 5.354 13 C 0.346 3.654 14 O -0.464 6.464 15 C -0.127 4.127 16 C -0.081 4.081 17 C -0.089 4.089 18 C -0.046 4.046 19 N -0.285 5.285 20 C 0.217 3.783 21 O -0.208 6.208 22 O -0.109 6.109 23 C -0.076 4.076 24 C -0.045 4.045 25 H 0.071 0.929 26 H 0.010 0.990 27 H 0.010 0.990 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.256 0.744 33 H 0.194 0.806 34 H 0.192 0.808 35 H 0.330 0.670 36 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 14.894 -25.658 0.014 29.668 hybrid contribution -0.246 0.694 -0.002 0.737 sum 14.648 -24.964 0.012 28.944 Atomic orbital electron populations 1.70106 1.07947 1.27776 1.51758 1.26032 0.95740 1.03580 0.94922 0.85478 0.78164 0.77973 0.79284 1.18985 1.21440 1.18996 1.21669 0.93830 0.91952 1.50295 0.91318 1.18953 0.94523 0.93017 0.95088 1.21611 0.98455 0.91459 1.02504 1.21315 0.91908 0.85208 1.01093 1.45808 1.11538 1.04512 1.73566 1.18289 0.87666 0.83436 0.76048 1.90788 1.18195 1.85383 1.51998 1.19482 0.94442 0.91190 1.07587 1.21250 0.89823 1.01567 0.95485 1.20256 1.02482 0.86522 0.99627 1.20070 0.89124 0.94259 1.01160 1.71204 1.29686 0.97683 1.29965 1.22586 0.78200 0.87392 0.90140 1.84696 1.37967 1.09629 1.88549 1.84359 1.30495 1.19481 1.76542 1.19772 0.96980 0.79937 1.10885 1.19799 0.99486 0.87970 0.97199 0.92907 0.98970 0.98980 0.90972 0.90977 0.92849 0.92858 0.74356 0.80641 0.80781 0.67018 0.84158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.63 13.29 21.45 0.28 -56.35 16 2 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 3 Si 0.97 43.09 29.54 68.60 2.03 45.12 16 4 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 5 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.54 -29.35 9.11 25.60 0.23 -29.11 16 8 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 1.11 4.97 29.84 0.15 1.25 16 10 C -0.10 -3.69 5.27 30.59 0.16 -3.53 16 11 C 0.13 4.27 5.67 86.38 0.49 4.76 16 12 N -0.70 -17.72 5.50 -466.29 -2.57 -20.29 16 13 C 0.56 15.72 7.76 86.69 0.67 16.40 16 14 O -0.58 -21.72 16.33 -4.00 -0.07 -21.79 16 15 C -0.12 -2.67 5.88 -20.06 -0.12 -2.79 16 16 C -0.06 -0.88 9.46 22.27 0.21 -0.67 16 17 C -0.07 -0.98 10.03 22.21 0.22 -0.76 16 18 C 0.07 1.28 7.23 39.49 0.29 1.57 16 19 N -0.53 -9.48 11.36 -422.42 -4.80 -14.28 16 20 C 0.47 7.63 9.54 130.40 1.24 8.88 16 21 O -0.40 -3.33 13.62 -61.54 -0.84 -4.17 16 22 O -0.21 -4.64 10.79 9.38 0.10 -4.54 16 23 C -0.03 -0.60 7.41 22.80 0.17 -0.43 16 24 C -0.02 -0.57 9.60 22.56 0.22 -0.36 16 25 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 26 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 27 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.42 7.18 6.47 -92.71 -0.60 6.58 16 33 H 0.18 1.31 6.36 -2.91 -0.02 1.29 16 34 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 35 H 0.46 -1.55 9.06 -74.06 -0.67 -2.22 16 36 H 0.14 3.45 7.64 -2.91 -0.02 3.43 16 Total: -1.00 -76.75 321.62 -1.58 -78.33 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: -0.12 Total: 2.58 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 4.40 Total: -4.62 kcal Atomic # 7 Polarization: -83.84 SS G_CDS: -7.08 Total: -90.92 kcal Atomic # 8 Polarization: -29.69 SS G_CDS: -0.80 Total: -30.50 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Total: -76.75 -1.58 -78.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141841.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.949 kcal (2) G-P(sol) polarization free energy of solvation -76.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds