Wall clock time and date at job start Tue Mar 31 2020 07:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47411 * 2 1 4 4 C 1.50704 * 109.47227 * 240.00067 * 2 1 3 5 5 H 1.08001 * 119.99988 * 275.00901 * 4 2 1 6 6 C 1.37872 * 120.00019 * 95.00092 * 4 2 1 7 7 N 1.31512 * 120.00119 * 184.91539 * 6 4 2 8 8 Si 1.86802 * 120.00241 * 4.91928 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.82640 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83087 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.82873 * 8 6 4 12 12 N 1.46902 * 109.47321 * 120.00384 * 2 1 3 13 13 C 1.46901 * 110.99816 * 274.99917 * 12 2 1 14 14 C 1.50698 * 109.47357 * 179.97438 * 13 12 2 15 15 C 1.36121 * 120.11526 * 259.73108 * 14 13 12 16 16 C 1.39270 * 121.08585 * 179.72003 * 15 14 13 17 17 C 1.36299 * 120.85650 * 0.55251 * 16 15 14 18 18 Cl 1.73602 * 120.21348 * 179.75133 * 17 16 15 19 19 C 1.40508 * 119.58279 * 359.72667 * 17 16 15 20 20 C 1.40733 * 121.38394 * 179.97438 * 19 17 16 21 21 C 1.36593 * 118.15511 * 180.02562 * 20 19 17 22 22 C 1.39314 * 119.93593 * 0.02562 * 21 20 19 23 23 N 1.31093 * 121.75286 * 359.97438 * 22 21 20 24 24 C 1.33691 * 121.31495 * 0.02562 * 23 22 21 25 25 H 1.09007 * 109.47121 * 295.05885 * 1 2 3 26 26 H 1.08994 * 109.47628 * 175.04966 * 1 2 3 27 27 H 1.09001 * 109.46816 * 55.05111 * 1 2 3 28 28 H 0.96998 * 120.00203 * 180.02562 * 7 6 4 29 29 H 1.00898 * 111.00644 * 151.04112 * 12 2 1 30 30 H 1.09000 * 109.47342 * 299.99984 * 13 12 2 31 31 H 1.09002 * 109.47102 * 59.99657 * 13 12 2 32 32 H 1.07997 * 119.45623 * 359.97438 * 15 14 13 33 33 H 1.08007 * 119.57359 * 180.30562 * 16 15 14 34 34 H 1.08003 * 120.92350 * 0.05675 * 20 19 17 35 35 H 1.07996 * 120.02822 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.12542 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4451 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5219 3.5560 15 6 1.7125 -0.9634 4.5008 16 6 2.1563 -1.6583 5.6231 17 6 3.4832 -1.9063 5.8123 18 17 4.0186 -2.7686 7.2207 19 6 4.4149 -1.4601 4.8599 20 6 5.7935 -1.6949 5.0174 21 6 6.6408 -1.2314 4.0514 22 6 6.1314 -0.5474 2.9498 23 7 4.8466 -0.3304 2.8062 24 6 3.9639 -0.7574 3.7149 25 1 -0.3634 0.4353 0.9310 26 1 -0.3634 -1.0237 -0.0887 27 1 -0.3633 0.5887 -0.8424 28 1 2.9370 -0.1048 -4.2553 29 1 2.9172 -1.1207 1.0287 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 0.6564 -0.7752 4.3759 33 1 1.4403 -2.0018 6.3551 34 1 6.1711 -2.2272 5.8780 35 1 7.7045 -1.3944 4.1420 36 1 6.8131 -0.1870 2.1937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612584393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:45 Heat of formation + Delta-G solvation = 44.684099 kcal Electronic energy + Delta-G solvation = -20130.747860 eV Core-core repulsion = 17026.291185 eV Total energy + Delta-G solvation = -3104.456675 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.96317 -37.57105 -36.88536 -35.77595 -33.64396 -32.24265 -30.78510 -30.68699 -28.54084 -25.44320 -24.62563 -23.93959 -23.70560 -20.82994 -19.62254 -18.41240 -17.30195 -17.14775 -16.76920 -15.30425 -14.91409 -14.72070 -14.49004 -14.16437 -13.74287 -13.69753 -13.32624 -13.10750 -12.81418 -12.55244 -12.35331 -12.02718 -11.63814 -11.47434 -11.22069 -11.03479 -10.95806 -10.69159 -10.61412 -10.49063 -10.20440 -9.74429 -9.48692 -8.98340 -8.89702 -8.56478 -8.15032 -7.36620 -6.08262 -4.08307 0.24291 0.71393 1.82665 1.88709 2.81024 3.28797 3.36571 3.38836 3.98724 4.24499 4.41304 4.51814 4.61191 4.64003 4.84839 4.96385 5.19368 5.21520 5.30924 5.47810 5.62039 5.63471 5.78389 5.89706 5.93622 6.11009 6.18572 6.35114 6.42999 6.56010 6.69061 6.71799 6.85867 6.91380 7.45091 7.66164 7.90196 7.99571 8.45316 8.69249 9.01046 9.56085 11.04877 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.004301 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.726573 B = 6508.190287 C = 7243.411069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.180 3.820 3 H 0.005 0.995 4 C -0.515 4.515 5 H 0.078 0.922 6 C 0.074 3.926 7 N -0.897 5.897 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.266 1.266 12 N -0.675 5.675 13 C 0.098 3.902 14 C -0.028 4.028 15 C -0.091 4.091 16 C -0.093 4.093 17 C -0.030 4.030 18 Cl -0.070 7.070 19 C -0.095 4.095 20 C -0.061 4.061 21 C -0.170 4.170 22 C 0.133 3.867 23 N -0.454 5.454 24 C 0.142 3.858 25 H 0.020 0.980 26 H 0.051 0.949 27 H 0.040 0.960 28 H 0.264 0.736 29 H 0.345 0.655 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.141 0.859 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.709 -0.396 20.771 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.072 3.928 3 H 0.023 0.977 4 C -0.553 4.553 5 H 0.096 0.904 6 C -0.128 4.128 7 N -0.535 5.535 8 Si 0.703 3.297 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.190 1.190 12 N -0.308 5.308 13 C -0.032 4.032 14 C -0.030 4.030 15 C -0.112 4.112 16 C -0.112 4.112 17 C -0.057 4.057 18 Cl -0.041 7.041 19 C -0.098 4.098 20 C -0.087 4.087 21 C -0.190 4.190 22 C -0.040 4.040 23 N -0.162 5.162 24 C 0.020 3.980 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.164 0.836 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.760 -0.233 20.128 20.477 hybrid contribution 1.262 0.890 0.526 1.631 sum 5.022 0.657 20.654 21.266 Atomic orbital electron populations 1.21846 0.98127 1.00674 0.97675 1.19573 0.92300 0.92638 0.88293 0.97731 1.21052 1.43493 0.95819 0.94956 0.90371 1.25010 0.94364 0.98147 0.95310 1.69902 1.46177 1.35770 1.01658 0.86886 0.79075 0.86654 0.77074 1.20233 1.21508 1.19029 1.60858 1.33479 1.31819 1.04599 1.20859 0.99372 0.93970 0.88970 1.19874 0.90189 0.96524 0.96387 1.20721 1.00488 0.97308 0.92709 1.20837 0.93672 0.98238 0.98439 1.20532 0.93921 1.01065 0.90204 1.98349 1.90735 1.75545 1.39483 1.18544 0.94163 1.01342 0.95764 1.21455 0.91664 0.96690 0.98936 1.21918 1.01361 1.00112 0.95563 1.23084 0.91861 0.93190 0.95833 1.68170 1.02912 1.18280 1.26789 1.18722 0.93862 0.95571 0.89890 0.96118 0.92998 0.94076 0.92625 0.83595 0.93996 0.90929 0.84158 0.84574 0.84288 0.84381 0.82092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.42 37.15 0.35 -2.39 16 2 C 0.18 4.32 2.26 -68.86 -0.16 4.17 16 3 H 0.01 0.12 4.95 -51.93 -0.26 -0.13 16 4 C -0.51 -14.54 8.84 -34.44 -0.30 -14.85 16 5 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.88 21.72 26.99 -169.99 -4.59 17.13 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.27 -6.33 6.82 56.52 0.39 -5.95 16 12 N -0.68 -14.41 6.29 -109.22 -0.69 -15.10 16 13 C 0.10 1.74 5.29 -4.98 -0.03 1.71 16 14 C -0.03 -0.45 5.40 -104.51 -0.56 -1.01 16 15 C -0.09 -1.18 9.56 -39.96 -0.38 -1.56 16 16 C -0.09 -1.07 9.73 -39.90 -0.39 -1.46 16 17 C -0.03 -0.36 6.32 -39.43 -0.25 -0.61 16 18 Cl -0.07 -0.72 27.56 -51.86 -1.43 -2.15 16 19 C -0.10 -1.30 5.74 -106.77 -0.61 -1.91 16 20 C -0.06 -0.70 9.53 -39.23 -0.37 -1.07 16 21 C -0.17 -1.78 10.03 -39.78 -0.40 -2.18 16 22 C 0.13 1.71 11.14 -17.47 -0.19 1.51 16 23 N -0.45 -7.43 9.56 -10.98 -0.10 -7.54 16 24 C 0.14 2.24 6.58 -84.86 -0.56 1.68 16 25 H 0.02 0.39 7.36 -51.92 -0.38 0.00 16 26 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.35 7.86 8.30 -39.29 -0.33 7.53 16 30 H 0.04 0.80 7.79 -51.93 -0.40 0.39 16 31 H 0.07 1.19 7.19 -51.93 -0.37 0.82 16 32 H 0.14 1.54 8.00 -52.49 -0.42 1.12 16 33 H 0.14 1.20 8.06 -52.48 -0.42 0.78 16 34 H 0.14 1.29 7.06 -52.48 -0.37 0.92 16 35 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 36 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -31.37 318.17 -9.42 -40.79 By element: Atomic # 1 Polarization: 8.83 SS G_CDS: -4.22 Total: 4.61 kcal Atomic # 6 Polarization: -11.96 SS G_CDS: -3.96 Total: -15.92 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: -0.02 Total: -49.26 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.59 Total: 17.13 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.43 Total: -2.15 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.37 -9.42 -40.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612584393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.478 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds