Wall clock time and date at job start Tue Mar 31 2020 07:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47411 * 2 1 4 4 C 1.50704 * 109.47227 * 240.00067 * 2 1 3 5 5 H 1.08001 * 119.99988 * 275.00901 * 4 2 1 6 6 C 1.37872 * 120.00019 * 95.00092 * 4 2 1 7 7 N 1.31512 * 120.00119 * 184.91539 * 6 4 2 8 8 Si 1.86802 * 120.00241 * 4.91928 * 6 4 2 9 9 H 1.48496 * 109.47292 * 84.82640 * 8 6 4 10 10 H 1.48494 * 109.47356 * 204.83087 * 8 6 4 11 11 H 1.48500 * 109.46883 * 324.82873 * 8 6 4 12 12 N 1.46902 * 109.47321 * 120.00384 * 2 1 3 13 13 C 1.46901 * 110.99816 * 274.99917 * 12 2 1 14 14 C 1.50698 * 109.47357 * 179.97438 * 13 12 2 15 15 C 1.36121 * 120.11526 * 259.73108 * 14 13 12 16 16 C 1.39270 * 121.08585 * 179.72003 * 15 14 13 17 17 C 1.36299 * 120.85650 * 0.55251 * 16 15 14 18 18 Cl 1.73602 * 120.21348 * 179.75133 * 17 16 15 19 19 C 1.40508 * 119.58279 * 359.72667 * 17 16 15 20 20 C 1.40733 * 121.38394 * 179.97438 * 19 17 16 21 21 C 1.36593 * 118.15511 * 180.02562 * 20 19 17 22 22 C 1.39314 * 119.93593 * 0.02562 * 21 20 19 23 23 N 1.31093 * 121.75286 * 359.97438 * 22 21 20 24 24 C 1.33691 * 121.31495 * 0.02562 * 23 22 21 25 25 H 1.09007 * 109.47121 * 295.05885 * 1 2 3 26 26 H 1.08994 * 109.47628 * 175.04966 * 1 2 3 27 27 H 1.09001 * 109.46816 * 55.05111 * 1 2 3 28 28 H 0.96998 * 120.00203 * 180.02562 * 7 6 4 29 29 H 1.00898 * 111.00644 * 151.04112 * 12 2 1 30 30 H 1.09000 * 109.47342 * 299.99984 * 13 12 2 31 31 H 1.09002 * 109.47102 * 59.99657 * 13 12 2 32 32 H 1.07997 * 119.45623 * 359.97438 * 15 14 13 33 33 H 1.08007 * 119.57359 * 180.30562 * 16 15 14 34 34 H 1.08003 * 120.92350 * 0.05675 * 20 19 17 35 35 H 1.07996 * 120.02822 * 179.97438 * 21 20 19 36 36 H 1.07995 * 119.12542 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1353 -1.7855 -1.2291 6 6 2.3602 0.0121 -2.3580 7 7 2.7059 -0.6131 -3.4622 8 14 2.3136 1.8791 -2.3174 9 1 3.5991 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4451 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5874 -0.5219 3.5560 15 6 1.7125 -0.9634 4.5008 16 6 2.1563 -1.6583 5.6231 17 6 3.4832 -1.9063 5.8123 18 17 4.0186 -2.7686 7.2207 19 6 4.4149 -1.4601 4.8599 20 6 5.7935 -1.6949 5.0174 21 6 6.6408 -1.2314 4.0514 22 6 6.1314 -0.5474 2.9498 23 7 4.8466 -0.3304 2.8062 24 6 3.9639 -0.7574 3.7149 25 1 -0.3634 0.4353 0.9310 26 1 -0.3634 -1.0237 -0.0887 27 1 -0.3633 0.5887 -0.8424 28 1 2.9370 -0.1048 -4.2553 29 1 2.9172 -1.1207 1.0287 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6162 2.5525 32 1 0.6564 -0.7752 4.3759 33 1 1.4403 -2.0018 6.3551 34 1 6.1711 -2.2272 5.8780 35 1 7.7045 -1.3944 4.1420 36 1 6.8131 -0.1870 2.1937 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612584393.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:44 Heat of formation + Delta-G solvation = 24.447007 kcal Electronic energy + Delta-G solvation = -20131.625406 eV Core-core repulsion = 17026.291185 eV Total energy + Delta-G solvation = -3105.334221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.94020 -38.59378 -38.05063 -37.14133 -34.98545 -34.02512 -32.16896 -31.63565 -29.99669 -27.35867 -25.97682 -25.05698 -24.69551 -21.97787 -21.48743 -19.36652 -19.13974 -18.14940 -17.97767 -16.98645 -15.96242 -15.91450 -15.72289 -15.45761 -15.29674 -15.07516 -14.58264 -14.32933 -14.14237 -13.90378 -13.73247 -13.31655 -13.04654 -12.87638 -12.63235 -12.53723 -12.35927 -12.24398 -11.96723 -11.87662 -11.80275 -11.34575 -11.03292 -10.76512 -10.48369 -9.84532 -9.23237 -9.00764 -8.31351 -6.36281 -0.71525 -0.23666 0.85389 0.97617 1.32521 1.32951 1.44157 1.86581 2.31859 2.95052 3.05583 3.31075 3.52593 3.69530 3.73578 3.80396 3.97298 4.01794 4.36250 4.41106 4.42052 4.57240 4.64091 4.76350 4.81203 4.90834 4.95515 5.01313 5.02426 5.13434 5.18804 5.41435 5.46346 5.52674 5.72132 5.75780 6.03065 6.52046 6.67053 6.81129 6.93931 7.32554 8.85670 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.004301 C = 0.003865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.726573 B = 6508.190287 C = 7243.411069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.182 3.818 3 H 0.002 0.998 4 C -0.519 4.519 5 H 0.032 0.968 6 C 0.018 3.982 7 N -0.945 5.945 8 Si 0.941 3.059 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.246 1.246 12 N -0.675 5.675 13 C 0.106 3.894 14 C -0.063 4.063 15 C -0.079 4.079 16 C -0.094 4.094 17 C -0.029 4.029 18 Cl -0.050 7.050 19 C -0.112 4.112 20 C -0.063 4.063 21 C -0.161 4.161 22 C 0.123 3.877 23 N -0.503 5.503 24 C 0.119 3.881 25 H 0.054 0.946 26 H 0.042 0.958 27 H 0.037 0.963 28 H 0.267 0.733 29 H 0.332 0.668 30 H 0.024 0.976 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.167 0.833 34 H 0.162 0.838 35 H 0.177 0.823 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.657 0.330 23.511 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.074 3.926 3 H 0.019 0.981 4 C -0.558 4.558 5 H 0.051 0.949 6 C -0.180 4.180 7 N -0.585 5.585 8 Si 0.765 3.235 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.169 1.169 12 N -0.305 5.305 13 C -0.023 4.023 14 C -0.065 4.065 15 C -0.099 4.099 16 C -0.113 4.113 17 C -0.057 4.057 18 Cl -0.021 7.021 19 C -0.115 4.115 20 C -0.089 4.089 21 C -0.180 4.180 22 C -0.049 4.049 23 N -0.212 5.212 24 C -0.003 4.003 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.149 0.851 30 H 0.042 0.958 31 H 0.107 0.893 32 H 0.178 0.822 33 H 0.185 0.815 34 H 0.180 0.820 35 H 0.195 0.805 36 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.695 0.490 22.901 23.203 hybrid contribution 1.370 0.521 -0.208 1.480 sum 5.064 1.011 22.693 23.273 Atomic orbital electron populations 1.21734 0.96231 1.00469 0.99326 1.19482 0.93680 0.91865 0.87620 0.98053 1.21257 1.43373 0.94016 0.97120 0.94936 1.25848 0.94042 1.03378 0.94715 1.70046 1.47936 1.37911 1.02587 0.85835 0.79790 0.80258 0.77607 1.19790 1.20914 1.16943 1.60799 1.32627 1.32426 1.04674 1.20789 0.99896 0.93085 0.88544 1.19767 0.90971 0.99000 0.96713 1.20981 1.01038 0.95793 0.92113 1.21133 0.94070 0.97596 0.98464 1.20701 0.94148 1.00399 0.90411 1.98356 1.90618 1.74962 1.38153 1.18751 0.95602 1.01527 0.95575 1.21791 0.90904 0.96420 0.99775 1.22258 1.03205 0.98472 0.94090 1.23560 0.91269 0.92999 0.97047 1.68122 1.04475 1.20332 1.28232 1.18897 0.93992 0.96546 0.90818 0.92735 0.93851 0.94394 0.92427 0.85067 0.95779 0.89304 0.82191 0.81548 0.82007 0.80536 0.80516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.09 9.42 71.98 0.68 -4.42 16 2 C 0.18 8.78 2.26 44.17 0.10 8.88 16 3 H 0.00 0.09 4.95 -2.39 -0.01 0.08 16 4 C -0.52 -30.36 8.84 25.60 0.23 -30.14 16 5 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 6 C 0.02 1.08 5.47 84.65 0.46 1.54 16 7 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 8 Si 0.94 45.06 26.99 68.60 1.85 46.92 16 9 H -0.27 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 11 H -0.25 -10.91 6.82 99.48 0.68 -10.23 16 12 N -0.67 -29.22 6.29 -499.46 -3.14 -32.36 16 13 C 0.11 3.75 5.29 85.56 0.45 4.20 16 14 C -0.06 -1.96 5.40 -19.79 -0.11 -2.07 16 15 C -0.08 -1.88 9.56 22.03 0.21 -1.67 16 16 C -0.09 -1.92 9.73 22.07 0.21 -1.71 16 17 C -0.03 -0.64 6.32 22.37 0.14 -0.50 16 18 Cl -0.05 -0.89 27.56 -2.72 -0.07 -0.96 16 19 C -0.11 -2.91 5.74 -21.26 -0.12 -3.03 16 20 C -0.06 -1.31 9.53 22.49 0.21 -1.09 16 21 C -0.16 -3.05 10.03 22.14 0.22 -2.83 16 22 C 0.12 3.12 11.14 85.06 0.95 4.06 16 23 N -0.50 -16.81 9.56 -188.65 -1.80 -18.62 16 24 C 0.12 3.77 6.58 40.28 0.27 4.03 16 25 H 0.05 1.94 7.36 -2.38 -0.02 1.92 16 26 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 29 H 0.33 15.80 8.30 -89.70 -0.74 15.06 16 30 H 0.02 0.93 7.79 -2.39 -0.02 0.91 16 31 H 0.09 2.77 7.19 -2.39 -0.02 2.76 16 32 H 0.16 3.07 8.00 -2.91 -0.02 3.04 16 33 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 34 H 0.16 2.50 7.06 -2.91 -0.02 2.48 16 35 H 0.18 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -70.78 318.17 1.37 -69.41 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.34 Total: 19.63 kcal Atomic # 6 Polarization: -28.64 SS G_CDS: 3.91 Total: -24.73 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -4.65 Total: -110.26 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.85 Total: 46.92 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.07 Total: -0.96 kcal Total: -70.78 1.37 -69.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612584393.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.854 kcal (2) G-P(sol) polarization free energy of solvation -70.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds