Wall clock time and date at job start Tue Mar 31 2020 07:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.50706 * 109.47238 * 119.99686 * 2 1 3 5 5 H 1.07998 * 119.99629 * 120.00096 * 4 2 1 6 6 C 1.37875 * 119.99955 * 300.00667 * 4 2 1 7 7 N 1.31515 * 119.99932 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47233 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.47364 * 119.99503 * 8 6 4 11 11 H 1.48500 * 109.46997 * 239.99827 * 8 6 4 12 12 N 1.46899 * 109.47254 * 239.99813 * 2 1 3 13 13 C 1.46902 * 110.99869 * 85.00254 * 12 2 1 14 14 C 1.50691 * 109.47150 * 180.02562 * 13 12 2 15 15 C 1.36237 * 120.13034 * 269.72476 * 14 13 12 16 16 Cl 1.73590 * 119.47968 * 359.97365 * 15 14 13 17 17 C 1.39445 * 121.03248 * 179.76296 * 15 14 13 18 18 C 1.36137 * 120.85613 * 0.49333 * 17 15 14 19 19 C 1.40409 * 119.63573 * 359.76970 * 18 17 15 20 20 C 1.40747 * 121.37605 * 179.97438 * 19 18 17 21 21 C 1.36588 * 118.15855 * 180.02562 * 20 19 18 22 22 C 1.39316 * 119.94741 * 0.02562 * 21 20 19 23 23 N 1.31090 * 121.74650 * 0.02562 * 22 21 20 24 24 C 1.33706 * 121.31670 * 359.95877 * 23 22 21 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 0.97003 * 119.99476 * 180.02562 * 7 6 4 29 29 H 1.00897 * 110.99858 * 321.04746 * 12 2 1 30 30 H 1.09003 * 109.47035 * 299.99864 * 13 12 2 31 31 H 1.09003 * 109.47106 * 59.99614 * 13 12 2 32 32 H 1.07997 * 119.56744 * 180.24417 * 17 15 14 33 33 H 1.08006 * 120.18054 * 179.79337 * 18 17 15 34 34 H 1.08002 * 120.91975 * 0.04347 * 20 19 18 35 35 H 1.08004 * 120.02858 * 179.97438 * 21 20 19 36 36 H 1.07996 * 119.12792 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9434 0.8302 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1455 -2.2875 3.6039 10 1 3.1465 -0.1873 4.8166 11 1 1.1660 -1.5866 4.8161 12 7 2.0197 -0.6925 -1.1994 13 6 2.0825 0.2226 -2.3469 14 6 2.5874 -0.5218 -3.5559 15 6 3.9229 -0.5707 -3.8205 16 17 5.0347 0.2308 -2.7551 17 6 4.4110 -1.2582 -4.9311 18 6 3.5638 -1.8917 -5.7880 19 6 2.1806 -1.8573 -5.5489 20 6 1.2718 -2.4990 -6.4110 21 6 -0.0597 -2.4230 -6.1161 22 6 -0.4835 -1.7238 -4.9881 23 7 0.3655 -1.1263 -4.1876 24 6 1.6820 -1.1623 -4.4189 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.7093 1.1617 3.4844 29 1 1.4496 -1.4979 -1.4100 30 1 1.0871 0.6163 -2.5525 31 1 2.7589 1.0462 -2.1181 32 1 5.4747 -1.2850 -5.1161 33 1 3.9535 -2.4181 -6.6468 34 1 1.6176 -3.0367 -7.2814 35 1 -0.7836 -2.9040 -6.7573 36 1 -1.5394 -1.6725 -4.7672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612584715.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:55:47 Heat of formation + Delta-G solvation = 28.323293 kcal Electronic energy + Delta-G solvation = -20224.790171 eV Core-core repulsion = 17119.624038 eV Total energy + Delta-G solvation = -3105.166133 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.87682 -38.77017 -37.70466 -36.98509 -35.21090 -33.92028 -31.89542 -31.34731 -29.62357 -27.25653 -26.03624 -24.95577 -24.56040 -22.19561 -21.86272 -19.34455 -18.53865 -18.08302 -17.67677 -16.77900 -16.20209 -16.00037 -15.73042 -15.38293 -15.11381 -14.75252 -14.55383 -14.05832 -13.91895 -13.80713 -13.53718 -13.25525 -13.05174 -12.84553 -12.67739 -12.46808 -12.28783 -12.16555 -12.11069 -11.96171 -11.62242 -11.25793 -11.04888 -10.48851 -10.36473 -9.66523 -9.21454 -8.92844 -8.08667 -6.19849 -0.61097 -0.23953 0.97273 1.18079 1.41250 1.42139 1.55480 1.86744 2.44461 3.05708 3.19064 3.38702 3.47713 3.78720 3.86219 3.90874 4.05732 4.08054 4.27178 4.50537 4.51859 4.60713 4.71823 4.77498 4.89369 4.97136 5.00086 5.10405 5.12044 5.26335 5.32689 5.40679 5.51494 5.67927 5.80502 5.82537 6.26251 6.63202 6.76193 6.93250 7.01038 7.49454 8.97321 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.017829 B = 0.004846 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.109006 B = 5776.502272 C = 6821.204868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.220 3.780 3 H -0.001 1.001 4 C -0.510 4.510 5 H 0.052 0.948 6 C 0.008 3.992 7 N -0.923 5.923 8 Si 0.962 3.038 9 H -0.270 1.270 10 H -0.280 1.280 11 H -0.278 1.278 12 N -0.666 5.666 13 C 0.111 3.889 14 C -0.071 4.071 15 C -0.012 4.012 16 Cl -0.066 7.066 17 C -0.119 4.119 18 C -0.069 4.069 19 C -0.120 4.120 20 C -0.048 4.048 21 C -0.169 4.169 22 C 0.124 3.876 23 N -0.512 5.512 24 C 0.117 3.883 25 H 0.063 0.937 26 H 0.019 0.981 27 H 0.027 0.973 28 H 0.261 0.739 29 H 0.325 0.675 30 H 0.028 0.972 31 H 0.063 0.937 32 H 0.162 0.838 33 H 0.184 0.816 34 H 0.183 0.817 35 H 0.178 0.822 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -7.556 -23.316 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.112 3.888 3 H 0.017 0.983 4 C -0.549 4.549 5 H 0.070 0.930 6 C -0.189 4.189 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.204 1.204 12 N -0.295 5.295 13 C -0.018 4.018 14 C -0.073 4.073 15 C -0.042 4.042 16 Cl -0.037 7.037 17 C -0.137 4.137 18 C -0.087 4.087 19 C -0.122 4.122 20 C -0.074 4.074 21 C -0.189 4.189 22 C -0.048 4.048 23 N -0.221 5.221 24 C -0.004 4.004 25 H 0.081 0.919 26 H 0.038 0.962 27 H 0.046 0.954 28 H 0.070 0.930 29 H 0.141 0.859 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.180 0.820 33 H 0.202 0.798 34 H 0.201 0.799 35 H 0.195 0.805 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.624 -6.775 -22.119 23.282 hybrid contribution -0.538 -0.065 0.629 0.830 sum 2.087 -6.840 -21.490 22.649 Atomic orbital electron populations 1.22162 1.00034 0.98873 0.99694 1.18915 0.89951 0.92561 0.87407 0.98305 1.21412 1.30222 1.12292 0.90931 0.92982 1.25724 0.95471 0.95906 1.01848 1.70031 1.38146 1.24297 1.23885 0.85443 0.78084 0.78554 0.79130 1.19453 1.20625 1.20399 1.60792 1.57265 1.08860 1.02578 1.20583 0.98470 0.94619 0.88100 1.19407 0.91859 0.99635 0.96442 1.20747 0.89722 0.99462 0.94244 1.98382 1.61408 1.78307 1.65559 1.21081 1.02526 0.97477 0.92643 1.21374 0.90284 0.97360 0.99709 1.19208 0.96517 1.00239 0.96245 1.21938 0.92527 0.94761 0.98156 1.22306 0.97724 1.00313 0.98533 1.23573 1.00326 0.90749 0.90184 1.68008 1.02653 1.20362 1.31088 1.18665 0.90461 0.97262 0.94029 0.91863 0.96192 0.95359 0.93005 0.85899 0.95436 0.91885 0.82006 0.79841 0.79941 0.80490 0.80618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.81 8.94 71.98 0.64 -7.17 16 2 C 0.22 12.12 2.57 44.17 0.11 12.24 16 3 H 0.00 -0.06 7.80 -2.39 -0.02 -0.08 16 4 C -0.51 -30.11 8.84 25.60 0.23 -29.88 16 5 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.48 5.30 84.65 0.45 0.93 16 7 N -0.92 -55.51 11.32 21.45 0.24 -55.27 16 8 Si 0.96 45.96 29.54 68.60 2.03 47.98 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 12 N -0.67 -31.85 6.22 -499.46 -3.11 -34.96 16 13 C 0.11 4.73 4.97 85.55 0.43 5.16 16 14 C -0.07 -2.53 5.40 -19.78 -0.11 -2.64 16 15 C -0.01 -0.39 6.27 22.09 0.14 -0.25 16 16 Cl -0.07 -2.18 27.15 -2.72 -0.07 -2.26 16 17 C -0.12 -2.61 9.72 22.07 0.21 -2.40 16 18 C -0.07 -1.20 9.77 22.31 0.22 -0.98 16 19 C -0.12 -2.67 5.74 -21.28 -0.12 -2.79 16 20 C -0.05 -0.69 9.90 22.50 0.22 -0.47 16 21 C -0.17 -2.43 10.03 22.14 0.22 -2.21 16 22 C 0.12 2.72 11.15 85.06 0.95 3.67 16 23 N -0.51 -16.31 9.41 -188.65 -1.78 -18.09 16 24 C 0.12 3.68 6.58 40.28 0.27 3.94 16 25 H 0.06 3.63 6.07 -2.38 -0.01 3.62 16 26 H 0.02 0.95 7.45 -2.39 -0.02 0.93 16 27 H 0.03 1.42 8.13 -2.39 -0.02 1.40 16 28 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 29 H 0.32 15.45 8.46 -89.70 -0.76 14.69 16 30 H 0.03 1.23 6.85 -2.39 -0.02 1.21 16 31 H 0.06 2.79 6.73 -2.39 -0.02 2.77 16 32 H 0.16 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.18 1.40 8.06 -2.91 -0.02 1.38 16 34 H 0.18 0.95 8.06 -2.91 -0.02 0.93 16 35 H 0.18 1.06 8.06 -2.91 -0.02 1.03 16 36 H 0.18 2.93 8.06 -2.91 -0.02 2.90 16 Total: -1.00 -72.95 318.05 1.52 -71.43 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 0.35 Total: 14.02 kcal Atomic # 6 Polarization: -26.71 SS G_CDS: 3.86 Total: -22.85 kcal Atomic # 7 Polarization: -103.67 SS G_CDS: -4.64 Total: -108.31 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.07 Total: -2.26 kcal Total: -72.95 1.52 -71.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612584715.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.750 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds