Wall clock time and date at job start Tue Mar 31 2020 07:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46903 * 109.46889 * 239.99675 * 2 1 3 13 13 C 1.46896 * 110.99628 * 85.00322 * 12 2 1 14 14 C 1.50702 * 109.46746 * 179.97438 * 13 12 2 15 15 C 1.36093 * 120.11764 * 260.00113 * 14 13 12 16 16 C 1.39426 * 121.05312 * 179.97438 * 15 14 13 17 17 Cl 1.73597 * 119.57958 * 179.97438 * 16 15 14 18 18 C 1.36282 * 120.83966 * 359.97438 * 16 15 14 19 19 C 1.40374 * 119.60910 * 0.02562 * 18 16 15 20 20 C 1.40779 * 121.37448 * 180.02562 * 19 18 16 21 21 C 1.36576 * 118.15190 * 179.97438 * 20 19 18 22 22 C 1.39333 * 119.93683 * 0.02562 * 21 20 19 23 23 N 1.31079 * 121.75570 * 359.97438 * 22 21 20 24 24 C 1.33692 * 121.32704 * 359.75744 * 23 22 21 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00042 * 321.04528 * 12 2 1 30 30 H 1.08994 * 109.47243 * 299.99423 * 13 12 2 31 31 H 1.09001 * 109.47225 * 60.00251 * 13 12 2 32 32 H 1.08001 * 119.47274 * 359.97438 * 15 14 13 33 33 H 1.07999 * 120.19686 * 180.02562 * 18 16 15 34 34 H 1.08001 * 120.92824 * 0.02562 * 20 19 18 35 35 H 1.07992 * 120.03089 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.12272 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3468 14 6 2.5884 -0.5217 -3.5557 15 6 3.8914 -0.4079 -3.9316 16 6 4.3804 -1.0880 -5.0462 17 17 6.0492 -0.9147 -5.4918 18 6 3.5649 -1.8871 -5.7903 19 6 2.2152 -2.0273 -5.4308 20 6 1.3401 -2.8433 -6.1726 21 6 0.0401 -2.9324 -5.7637 22 6 -0.3857 -2.2257 -4.6409 23 7 0.4317 -1.4668 -3.9525 24 6 1.7176 -1.3400 -4.2957 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7088 1.1615 3.4843 29 1 1.4495 -1.4980 -1.4100 30 1 1.0871 0.6162 -2.5525 31 1 2.7589 1.0460 -2.1182 32 1 4.5573 0.2193 -3.3575 33 1 3.9547 -2.4095 -6.6515 34 1 1.6873 -3.3845 -7.0403 35 1 -0.6572 -3.5500 -6.3101 36 1 -1.4168 -2.3054 -4.3295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612584738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:18 Heat of formation + Delta-G solvation = 44.540294 kcal Electronic energy + Delta-G solvation = -20001.083333 eV Core-core repulsion = 16896.620422 eV Total energy + Delta-G solvation = -3104.462911 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 7.12 seconds Orbital eigenvalues (eV) -40.95810 -37.68825 -36.56495 -35.70610 -33.84518 -32.24607 -30.66638 -30.34951 -28.01058 -25.14054 -24.70149 -23.93305 -23.62200 -20.84326 -20.09790 -18.39636 -17.20254 -17.03988 -16.15993 -15.12837 -14.87135 -14.76665 -14.46771 -14.18813 -13.93512 -13.38439 -13.24624 -12.92601 -12.79733 -12.61117 -11.90382 -11.81661 -11.58768 -11.27073 -11.04704 -10.95711 -10.84865 -10.71153 -10.66709 -10.32916 -10.05696 -9.84791 -9.45553 -8.94715 -8.76149 -8.29866 -8.21023 -7.14749 -5.92414 -3.95382 0.26293 0.67925 1.87572 1.98566 2.75609 3.38520 3.41940 3.45815 3.99838 4.26589 4.41605 4.50031 4.58876 4.73166 4.90113 4.92194 5.12088 5.31085 5.38933 5.52318 5.69394 5.69911 5.78560 5.91475 5.96036 6.10687 6.27690 6.37945 6.55587 6.71245 6.81803 6.97796 7.20065 7.43635 7.82436 7.89589 7.95074 8.33944 8.61767 8.68272 9.11323 9.69426 11.14483 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.004352 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.686988 B = 6432.016070 C = 7649.294700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.212 3.788 3 H 0.033 0.967 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.055 3.945 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.289 1.289 10 H -0.279 1.279 11 H -0.278 1.278 12 N -0.675 5.675 13 C 0.101 3.899 14 C -0.019 4.019 15 C -0.093 4.093 16 C -0.018 4.018 17 Cl -0.071 7.071 18 C -0.103 4.103 19 C -0.094 4.094 20 C -0.059 4.059 21 C -0.173 4.173 22 C 0.129 3.871 23 N -0.456 5.456 24 C 0.133 3.867 25 H 0.007 0.993 26 H 0.026 0.974 27 H 0.086 0.914 28 H 0.259 0.741 29 H 0.330 0.670 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.533 -5.460 -20.229 21.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.105 3.895 3 H 0.051 0.949 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.215 1.215 10 H -0.204 1.204 11 H -0.203 1.203 12 N -0.305 5.305 13 C -0.028 4.028 14 C -0.021 4.021 15 C -0.114 4.114 16 C -0.044 4.044 17 Cl -0.042 7.042 18 C -0.123 4.123 19 C -0.096 4.096 20 C -0.085 4.085 21 C -0.193 4.193 22 C -0.044 4.044 23 N -0.163 5.163 24 C 0.011 3.989 25 H 0.026 0.974 26 H 0.045 0.955 27 H 0.105 0.895 28 H 0.069 0.931 29 H 0.147 0.853 30 H 0.062 0.938 31 H 0.092 0.908 32 H 0.160 0.840 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.069 -4.710 -19.161 19.840 hybrid contribution -0.257 -0.890 -0.185 0.944 sum 1.812 -5.600 -19.346 20.222 Atomic orbital electron populations 1.22377 1.00493 0.99190 1.00372 1.19174 0.89804 0.94319 0.86210 0.94922 1.21114 1.30151 1.12372 0.89608 0.92114 1.24935 0.95384 0.95223 0.98939 1.69884 1.37343 1.23190 1.23339 0.86576 0.79163 0.79600 0.82111 1.21489 1.20438 1.20327 1.60968 1.58182 1.08875 1.02465 1.20798 0.99383 0.94811 0.87798 1.19779 0.91681 0.94897 0.95708 1.20698 0.95387 1.00049 0.95293 1.20635 0.85790 1.00533 0.97457 1.98370 1.16753 1.96810 1.92241 1.20729 0.91921 0.99280 1.00333 1.18638 0.94324 0.99585 0.97046 1.21379 0.93175 0.95664 0.98329 1.21897 0.96827 1.01644 0.98919 1.23038 0.99628 0.90999 0.90724 1.68106 1.02667 1.16592 1.28947 1.18850 0.91000 0.96177 0.92861 0.97369 0.95464 0.89501 0.93087 0.85324 0.93839 0.90793 0.83958 0.84539 0.84452 0.84541 0.82337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.10 8.94 37.16 0.33 -3.77 16 2 C 0.21 5.47 2.57 -68.86 -0.18 5.29 16 3 H 0.03 0.91 7.80 -51.93 -0.40 0.51 16 4 C -0.49 -13.95 8.84 -34.44 -0.30 -14.26 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.06 1.56 5.30 -17.82 -0.09 1.47 16 7 N -0.90 -26.01 11.32 55.43 0.63 -25.39 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 N -0.67 -15.00 6.22 -109.22 -0.68 -15.68 16 13 C 0.10 1.91 5.28 -4.98 -0.03 1.89 16 14 C -0.02 -0.31 5.40 -104.52 -0.56 -0.88 16 15 C -0.09 -1.35 9.34 -39.91 -0.37 -1.72 16 16 C -0.02 -0.22 6.28 -39.84 -0.25 -0.47 16 17 Cl -0.07 -0.80 28.92 -51.86 -1.50 -2.30 16 18 C -0.10 -1.19 9.52 -39.48 -0.38 -1.57 16 19 C -0.09 -1.19 5.74 -106.80 -0.61 -1.80 16 20 C -0.06 -0.58 9.90 -39.22 -0.39 -0.97 16 21 C -0.17 -1.60 10.03 -39.77 -0.40 -2.00 16 22 C 0.13 1.51 11.15 -17.47 -0.19 1.32 16 23 N -0.46 -7.08 9.56 -10.97 -0.10 -7.19 16 24 C 0.13 2.06 6.59 -84.85 -0.56 1.50 16 25 H 0.01 0.17 7.45 -51.93 -0.39 -0.22 16 26 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.33 7.35 8.42 -39.29 -0.33 7.02 16 30 H 0.04 0.85 7.17 -51.93 -0.37 0.48 16 31 H 0.07 1.36 7.89 -51.93 -0.41 0.95 16 32 H 0.14 1.96 8.00 -52.49 -0.42 1.54 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 35 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 321.01 15.07 4.84 4.84 Total: -1.00 -30.55 321.01 -10.12 -40.67 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -4.30 Total: 4.19 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -3.99 Total: -15.98 kcal Atomic # 7 Polarization: -48.10 SS G_CDS: -0.16 Total: -48.26 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.50 Total: -2.30 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.55 -10.12 -40.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612584738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.211 kcal (2) G-P(sol) polarization free energy of solvation -30.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.13 seconds