Wall clock time and date at job start Tue Mar 31 2020 07:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.47077 * 2 1 4 4 C 1.50694 * 109.46867 * 119.99720 * 2 1 3 5 5 H 1.08002 * 120.00179 * 119.99762 * 4 2 1 6 6 C 1.37879 * 120.00472 * 300.00079 * 4 2 1 7 7 N 1.31514 * 119.99350 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00608 * 179.97438 * 6 4 2 9 9 H 1.48490 * 109.47339 * 179.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 300.00306 * 8 6 4 11 11 H 1.48504 * 109.46636 * 59.99865 * 8 6 4 12 12 N 1.46903 * 109.46889 * 239.99675 * 2 1 3 13 13 C 1.46896 * 110.99628 * 85.00322 * 12 2 1 14 14 C 1.50702 * 109.46746 * 179.97438 * 13 12 2 15 15 C 1.36093 * 120.11764 * 260.00113 * 14 13 12 16 16 C 1.39426 * 121.05312 * 179.97438 * 15 14 13 17 17 Cl 1.73597 * 119.57958 * 179.97438 * 16 15 14 18 18 C 1.36282 * 120.83966 * 359.97438 * 16 15 14 19 19 C 1.40374 * 119.60910 * 0.02562 * 18 16 15 20 20 C 1.40779 * 121.37448 * 180.02562 * 19 18 16 21 21 C 1.36576 * 118.15190 * 179.97438 * 20 19 18 22 22 C 1.39333 * 119.93683 * 0.02562 * 21 20 19 23 23 N 1.31079 * 121.75570 * 359.97438 * 22 21 20 24 24 C 1.33692 * 121.32704 * 359.75744 * 23 22 21 25 25 H 1.09007 * 109.47140 * 60.00496 * 1 2 3 26 26 H 1.09000 * 109.47809 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47703 * 300.00645 * 1 2 3 28 28 H 0.97005 * 119.99661 * 179.97438 * 7 6 4 29 29 H 1.00894 * 111.00042 * 321.04528 * 12 2 1 30 30 H 1.08994 * 109.47243 * 299.99423 * 13 12 2 31 31 H 1.09001 * 109.47225 * 60.00251 * 13 12 2 32 32 H 1.08001 * 119.47274 * 359.97438 * 15 14 13 33 33 H 1.07999 * 120.19686 * 180.02562 * 18 16 15 34 34 H 1.08001 * 120.92824 * 0.02562 * 20 19 18 35 35 H 1.07992 * 120.03089 * 180.02562 * 21 20 19 36 36 H 1.07999 * 119.12272 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6531 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8303 2.6033 8 14 2.3212 -1.1202 4.0081 9 1 1.8268 -0.4197 5.2204 10 1 1.8257 -2.5200 4.0079 11 1 3.8062 -1.1208 4.0082 12 7 2.0196 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3468 14 6 2.5884 -0.5217 -3.5557 15 6 3.8914 -0.4079 -3.9316 16 6 4.3804 -1.0880 -5.0462 17 17 6.0492 -0.9147 -5.4918 18 6 3.5649 -1.8871 -5.7903 19 6 2.2152 -2.0273 -5.4308 20 6 1.3401 -2.8433 -6.1726 21 6 0.0401 -2.9324 -5.7637 22 6 -0.3857 -2.2257 -4.6409 23 7 0.4317 -1.4668 -3.9525 24 6 1.7176 -1.3400 -4.2957 25 1 -0.3634 0.5138 -0.8901 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 0.7088 1.1615 3.4843 29 1 1.4495 -1.4980 -1.4100 30 1 1.0871 0.6162 -2.5525 31 1 2.7589 1.0460 -2.1182 32 1 4.5573 0.2193 -3.3575 33 1 3.9547 -2.4095 -6.6515 34 1 1.6873 -3.3845 -7.0403 35 1 -0.6572 -3.5500 -6.3101 36 1 -1.4168 -2.3054 -4.3295 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612584738.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:12 Heat of formation + Delta-G solvation = 26.037822 kcal Electronic energy + Delta-G solvation = -20001.885660 eV Core-core repulsion = 16896.620422 eV Total energy + Delta-G solvation = -3105.265238 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 4.11 seconds Orbital eigenvalues (eV) -41.91159 -38.69169 -37.96614 -36.97615 -35.20732 -33.93323 -31.86283 -31.40290 -29.66348 -27.25165 -26.08605 -24.99827 -24.57993 -22.18410 -21.91146 -19.32928 -18.54420 -18.05032 -17.81047 -16.77802 -16.22334 -15.98902 -15.70809 -15.33732 -15.17781 -14.90349 -14.57534 -13.97338 -13.92537 -13.86445 -13.58866 -13.28611 -13.05617 -12.82466 -12.72297 -12.57049 -12.31822 -12.15984 -12.02681 -11.90992 -11.81562 -11.42572 -11.06556 -10.47875 -10.38176 -9.70806 -9.24697 -8.94628 -8.08612 -6.20278 -0.65530 -0.26029 0.95204 1.04418 1.43133 1.45388 1.53238 1.80411 2.44854 3.03063 3.19064 3.33247 3.44728 3.72693 3.87054 3.94968 3.99910 4.07276 4.16749 4.45375 4.51956 4.62792 4.67030 4.74645 4.89131 4.92758 4.98540 5.02824 5.11140 5.22116 5.33771 5.40097 5.46089 5.68229 5.78579 5.80816 6.26186 6.63148 6.76716 6.92398 7.00269 7.49170 8.96802 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015881 B = 0.004352 C = 0.003660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1762.686988 B = 6432.016070 C = 7649.294700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.217 3.783 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.052 0.948 6 C 0.010 3.990 7 N -0.922 5.922 8 Si 0.962 3.038 9 H -0.282 1.282 10 H -0.272 1.272 11 H -0.274 1.274 12 N -0.675 5.675 13 C 0.112 3.888 14 C -0.052 4.052 15 C -0.092 4.092 16 C -0.035 4.035 17 Cl -0.059 7.059 18 C -0.079 4.079 19 C -0.109 4.109 20 C -0.050 4.050 21 C -0.165 4.165 22 C 0.125 3.875 23 N -0.508 5.508 24 C 0.113 3.887 25 H 0.021 0.979 26 H 0.026 0.974 27 H 0.062 0.938 28 H 0.262 0.738 29 H 0.329 0.671 30 H 0.030 0.970 31 H 0.066 0.934 32 H 0.138 0.862 33 H 0.172 0.828 34 H 0.180 0.820 35 H 0.179 0.821 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.613 -7.725 -22.383 23.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.109 3.891 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.070 0.930 6 C -0.188 4.188 7 N -0.562 5.562 8 Si 0.788 3.212 9 H -0.207 1.207 10 H -0.197 1.197 11 H -0.199 1.199 12 N -0.305 5.305 13 C -0.017 4.017 14 C -0.054 4.054 15 C -0.113 4.113 16 C -0.062 4.062 17 Cl -0.030 7.030 18 C -0.099 4.099 19 C -0.111 4.111 20 C -0.076 4.076 21 C -0.184 4.184 22 C -0.047 4.047 23 N -0.217 5.217 24 C -0.008 4.008 25 H 0.040 0.960 26 H 0.045 0.955 27 H 0.081 0.919 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.048 0.952 31 H 0.084 0.916 32 H 0.156 0.844 33 H 0.190 0.810 34 H 0.198 0.802 35 H 0.196 0.804 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.154 -6.976 -21.336 22.551 hybrid contribution -0.338 -0.220 0.349 0.533 sum 1.816 -7.196 -20.987 22.260 Atomic orbital electron populations 1.22148 0.99923 0.98868 0.99731 1.18948 0.90116 0.92716 0.87347 0.97909 1.21374 1.30607 1.12469 0.91051 0.93020 1.25718 0.95399 0.95873 1.01824 1.70011 1.37908 1.24186 1.24075 0.85550 0.78637 0.78623 0.78408 1.20734 1.19736 1.19907 1.60829 1.57599 1.09220 1.02803 1.20613 0.98647 0.94425 0.88005 1.19506 0.92930 0.97141 0.95786 1.20717 0.94715 0.99925 0.95939 1.20598 0.86706 1.01373 0.97507 1.98369 1.15778 1.96855 1.92037 1.21133 0.91158 0.97412 1.00157 1.18916 0.95385 1.00106 0.96726 1.21885 0.92751 0.94305 0.98655 1.22305 0.97519 1.00833 0.97766 1.23609 1.00118 0.89927 0.91056 1.68058 1.03356 1.19085 1.31184 1.18933 0.91144 0.96771 0.93986 0.96039 0.95450 0.91894 0.92939 0.85384 0.95176 0.91557 0.84420 0.81012 0.80245 0.80359 0.80448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 8.94 71.98 0.64 -6.94 16 2 C 0.22 11.69 2.57 44.17 0.11 11.81 16 3 H 0.00 0.18 7.80 -2.39 -0.02 0.16 16 4 C -0.52 -30.02 8.84 25.60 0.23 -29.80 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.57 5.30 84.66 0.45 1.02 16 7 N -0.92 -54.54 11.32 21.45 0.24 -54.30 16 8 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 9 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 11 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.68 -31.46 6.22 -499.48 -3.11 -34.56 16 13 C 0.11 4.51 5.28 85.56 0.45 4.96 16 14 C -0.05 -1.77 5.40 -19.80 -0.11 -1.88 16 15 C -0.09 -2.73 9.34 22.06 0.21 -2.53 16 16 C -0.04 -0.86 6.28 22.10 0.14 -0.72 16 17 Cl -0.06 -1.26 28.92 -2.72 -0.08 -1.34 16 18 C -0.08 -1.62 9.52 22.33 0.21 -1.40 16 19 C -0.11 -2.52 5.74 -21.28 -0.12 -2.65 16 20 C -0.05 -0.77 9.90 22.50 0.22 -0.55 16 21 C -0.16 -2.40 10.03 22.14 0.22 -2.18 16 22 C 0.12 2.71 11.15 85.07 0.95 3.66 16 23 N -0.51 -15.84 9.56 -188.63 -1.80 -17.64 16 24 C 0.11 3.49 6.59 40.29 0.27 3.76 16 25 H 0.02 1.00 7.45 -2.38 -0.02 0.98 16 26 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 27 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 28 H 0.26 14.70 8.31 -92.70 -0.77 13.93 16 29 H 0.33 15.30 8.42 -89.70 -0.75 14.54 16 30 H 0.03 1.26 7.17 -2.39 -0.02 1.25 16 31 H 0.07 2.66 7.89 -2.39 -0.02 2.64 16 32 H 0.14 4.02 8.00 -2.91 -0.02 3.99 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.18 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.18 2.89 8.06 -2.91 -0.02 2.87 16 Total: -1.00 -68.66 321.01 1.50 -67.16 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.35 Total: 16.88 kcal Atomic # 6 Polarization: -27.30 SS G_CDS: 3.87 Total: -23.43 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -4.67 Total: -106.50 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -68.66 1.50 -67.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612584738.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.198 kcal (2) G-P(sol) polarization free energy of solvation -68.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.11 seconds