Wall clock time and date at job start Tue Mar 31 2020 07:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47156 * 2 1 4 4 C 1.50702 * 109.47421 * 239.99510 * 2 1 3 5 5 H 1.07997 * 119.99924 * 245.38110 * 4 2 1 6 6 C 1.37881 * 119.99738 * 65.37568 * 4 2 1 7 7 N 1.31510 * 119.99867 * 185.16616 * 6 4 2 8 8 Si 1.86797 * 119.99999 * 5.16634 * 6 4 2 9 9 H 1.48503 * 109.47086 * 270.00046 * 8 6 4 10 10 H 1.48495 * 109.47175 * 29.99866 * 8 6 4 11 11 H 1.48497 * 109.46842 * 150.00101 * 8 6 4 12 12 N 1.46899 * 109.46598 * 119.99551 * 2 1 3 13 13 C 1.46896 * 111.00134 * 275.00079 * 12 2 1 14 14 C 1.50696 * 109.47170 * 180.02562 * 13 12 2 15 15 C 1.36095 * 120.12035 * 259.99840 * 14 13 12 16 16 C 1.39424 * 121.05051 * 179.97438 * 15 14 13 17 17 Cl 1.73603 * 119.57368 * 179.97438 * 16 15 14 18 18 C 1.36275 * 120.84547 * 359.97438 * 16 15 14 19 19 C 1.40371 * 119.60945 * 359.97438 * 18 16 15 20 20 C 1.40780 * 121.37845 * 180.02562 * 19 18 16 21 21 C 1.36574 * 118.15433 * 179.97438 * 20 19 18 22 22 C 1.39335 * 119.93532 * 359.97438 * 21 20 19 23 23 N 1.31077 * 121.75550 * 359.97438 * 22 21 20 24 24 C 1.33683 * 121.32807 * 359.75209 * 23 22 21 25 25 H 1.08995 * 109.47876 * 294.98324 * 1 2 3 26 26 H 1.09008 * 109.47161 * 54.98345 * 1 2 3 27 27 H 1.09004 * 109.47188 * 174.97678 * 1 2 3 28 28 H 0.97010 * 119.99945 * 355.00148 * 7 6 4 29 29 H 1.00902 * 111.00082 * 38.95438 * 12 2 1 30 30 H 1.09006 * 109.47351 * 300.00205 * 13 12 2 31 31 H 1.09004 * 109.47195 * 60.00259 * 13 12 2 32 32 H 1.07997 * 119.46846 * 359.97438 * 15 14 13 33 33 H 1.08000 * 120.19898 * 180.02562 * 18 16 15 34 34 H 1.07997 * 120.92647 * 0.02562 * 20 19 18 35 35 H 1.07996 * 120.03211 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.11984 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5798 -1.6365 -1.1336 6 6 1.7931 -0.1784 -2.4797 7 7 2.1414 -0.8474 -3.5570 8 14 0.9743 1.4927 -2.6419 9 1 -0.4989 1.3177 -2.7074 10 1 1.3215 2.3303 -1.4660 11 1 1.4494 2.1583 -3.8815 12 7 2.0195 -0.6924 1.1995 13 6 2.0823 0.2227 2.3469 14 6 2.5882 -0.5213 3.5558 15 6 1.7138 -0.9681 4.4981 16 6 2.1605 -1.6589 5.6238 17 17 1.0115 -2.2109 6.8022 18 6 3.4875 -1.9063 5.8107 19 6 4.4170 -1.4607 4.8579 20 6 5.7963 -1.6963 5.0133 21 6 6.6420 -1.2340 4.0458 22 6 6.1311 -0.5511 2.9440 23 7 4.8462 -0.3343 2.8018 24 6 3.9641 -0.7649 3.7093 25 1 -0.3635 0.4340 0.9314 26 1 -0.3634 0.5897 -0.8417 27 1 -0.3634 -1.0237 -0.0900 28 1 2.6312 -1.6806 -3.4734 29 1 1.4494 -1.4978 1.4101 30 1 2.7587 1.0463 2.1182 31 1 1.0868 0.6164 2.5525 32 1 0.6570 -0.7844 4.3719 33 1 3.8220 -2.4428 6.6863 34 1 6.1749 -2.2286 5.8733 35 1 7.7058 -1.3982 4.1342 36 1 6.8119 -0.1909 2.1869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612584739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:26 Heat of formation + Delta-G solvation = 47.523336 kcal Electronic energy + Delta-G solvation = -20049.180289 eV Core-core repulsion = 16944.846732 eV Total energy + Delta-G solvation = -3104.333556 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.93686 -37.74781 -36.72934 -35.83897 -33.87801 -32.29244 -30.80210 -30.44959 -28.57953 -25.16338 -24.50495 -23.87558 -23.64369 -20.87940 -19.91487 -18.40575 -17.55110 -17.11799 -16.93852 -15.19184 -14.87726 -14.70219 -14.54397 -14.24973 -13.77199 -13.53087 -13.32203 -13.02748 -12.95924 -12.65945 -12.07685 -12.02784 -11.89486 -11.63394 -11.27610 -11.14260 -10.98003 -10.87322 -10.53803 -10.40740 -9.94135 -9.66136 -9.33068 -8.79423 -8.69039 -8.34379 -8.23943 -7.37156 -6.31151 -3.94157 0.25771 0.67539 1.88490 1.91290 2.72655 3.39732 3.47228 3.61924 4.03183 4.30259 4.40250 4.54593 4.60732 4.74826 4.86525 4.91719 5.03204 5.27239 5.36827 5.41860 5.49526 5.68491 5.73926 5.83922 5.90563 6.07259 6.10651 6.27111 6.31269 6.37641 6.46245 6.59691 6.70097 6.83015 7.20440 7.82801 8.02228 8.31897 8.37553 8.55264 9.10094 9.74642 11.08141 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.004565 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.271372 B = 6132.085257 C = 7369.294509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.184 3.816 3 H 0.035 0.965 4 C -0.567 4.567 5 H 0.062 0.938 6 C 0.022 3.978 7 N -0.920 5.920 8 Si 1.056 2.944 9 H -0.287 1.287 10 H -0.281 1.281 11 H -0.291 1.291 12 N -0.658 5.658 13 C 0.101 3.899 14 C -0.021 4.021 15 C -0.109 4.109 16 C -0.022 4.022 17 Cl -0.072 7.072 18 C -0.097 4.097 19 C -0.096 4.096 20 C -0.064 4.064 21 C -0.169 4.169 22 C 0.128 3.872 23 N -0.434 5.434 24 C 0.145 3.855 25 H 0.023 0.977 26 H 0.047 0.953 27 H 0.051 0.949 28 H 0.266 0.734 29 H 0.326 0.674 30 H 0.087 0.913 31 H 0.029 0.971 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.519 -0.382 21.843 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.075 3.925 3 H 0.053 0.947 4 C -0.606 4.606 5 H 0.080 0.920 6 C -0.181 4.181 7 N -0.556 5.556 8 Si 0.887 3.113 9 H -0.214 1.214 10 H -0.208 1.208 11 H -0.217 1.217 12 N -0.287 5.287 13 C -0.028 4.028 14 C -0.022 4.022 15 C -0.130 4.130 16 C -0.049 4.049 17 Cl -0.043 7.043 18 C -0.117 4.117 19 C -0.099 4.099 20 C -0.090 4.090 21 C -0.189 4.189 22 C -0.045 4.045 23 N -0.141 5.141 24 C 0.023 3.977 25 H 0.042 0.958 26 H 0.066 0.934 27 H 0.070 0.930 28 H 0.076 0.924 29 H 0.142 0.858 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.155 0.845 35 H 0.155 0.845 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 4.068 1.209 19.935 20.382 hybrid contribution -0.154 -1.691 2.202 2.780 sum 3.914 -0.481 22.137 22.486 Atomic orbital electron populations 1.22831 1.01567 1.01031 0.98619 1.19714 0.88546 0.95258 0.89016 0.94749 1.22033 1.38189 1.10200 0.90172 0.92000 1.25685 0.97000 1.03401 0.92030 1.70799 1.37567 1.17000 1.30185 0.83842 0.76019 0.75979 0.75475 1.21395 1.20763 1.21735 1.60704 1.57759 1.08246 1.01958 1.20864 0.98262 0.95599 0.88094 1.19737 0.90634 0.96181 0.95680 1.20672 1.00780 0.98740 0.92778 1.20548 0.90338 1.01339 0.92647 1.98369 1.60295 1.88404 1.57278 1.20750 0.90835 1.00697 0.99413 1.18689 0.94371 1.00834 0.95998 1.21348 0.91569 0.97186 0.98941 1.21948 1.01279 0.99994 0.95699 1.23125 0.92041 0.93543 0.95772 1.68213 1.02424 1.17550 1.25897 1.18749 0.93699 0.95344 0.89954 0.95767 0.93390 0.92993 0.92379 0.85782 0.89484 0.95325 0.84480 0.84527 0.84514 0.84539 0.82253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.92 8.77 37.16 0.33 -3.59 16 2 C 0.18 4.42 2.15 -68.86 -0.15 4.27 16 3 H 0.03 0.86 6.30 -51.93 -0.33 0.54 16 4 C -0.57 -16.32 9.20 -34.44 -0.32 -16.64 16 5 H 0.06 1.96 8.04 -52.49 -0.42 1.54 16 6 C 0.02 0.65 5.43 -17.82 -0.10 0.55 16 7 N -0.92 -28.95 13.70 55.43 0.76 -28.19 16 8 Si 1.06 26.01 25.29 -169.99 -4.30 21.71 16 9 H -0.29 -6.71 6.81 56.52 0.38 -6.32 16 10 H -0.28 -6.47 6.36 56.52 0.36 -6.11 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 N -0.66 -13.96 6.22 -109.22 -0.68 -14.64 16 13 C 0.10 1.79 5.28 -4.98 -0.03 1.77 16 14 C -0.02 -0.33 5.40 -104.52 -0.56 -0.89 16 15 C -0.11 -1.45 9.34 -39.91 -0.37 -1.83 16 16 C -0.02 -0.27 6.28 -39.85 -0.25 -0.52 16 17 Cl -0.07 -0.77 28.92 -51.86 -1.50 -2.27 16 18 C -0.10 -1.10 9.52 -39.49 -0.38 -1.48 16 19 C -0.10 -1.24 5.74 -106.80 -0.61 -1.86 16 20 C -0.06 -0.66 9.90 -39.22 -0.39 -1.05 16 21 C -0.17 -1.70 10.03 -39.77 -0.40 -2.10 16 22 C 0.13 1.66 11.14 -17.47 -0.19 1.46 16 23 N -0.43 -7.27 9.60 -10.97 -0.11 -7.38 16 24 C 0.14 2.29 6.59 -84.85 -0.56 1.74 16 25 H 0.02 0.44 7.35 -51.93 -0.38 0.06 16 26 H 0.05 1.06 4.40 -51.92 -0.23 0.83 16 27 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.27 8.39 8.72 -40.82 -0.36 8.03 16 29 H 0.33 6.64 8.47 -39.29 -0.33 6.31 16 30 H 0.09 1.65 7.79 -51.93 -0.40 1.25 16 31 H 0.03 0.47 7.19 -51.93 -0.37 0.09 16 32 H 0.14 1.65 8.00 -52.49 -0.42 1.23 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.16 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 315.41 15.07 4.75 4.75 Total: -1.00 -32.54 315.41 -9.26 -41.80 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -4.22 Total: 4.38 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.98 Total: -20.16 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.03 Total: -50.22 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -4.30 Total: 21.71 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -32.54 -9.26 -41.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612584739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.323 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds