Wall clock time and date at job start Tue Mar 31 2020 07:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47156 * 2 1 4 4 C 1.50702 * 109.47421 * 239.99510 * 2 1 3 5 5 H 1.07997 * 119.99924 * 245.38110 * 4 2 1 6 6 C 1.37881 * 119.99738 * 65.37568 * 4 2 1 7 7 N 1.31510 * 119.99867 * 185.16616 * 6 4 2 8 8 Si 1.86797 * 119.99999 * 5.16634 * 6 4 2 9 9 H 1.48503 * 109.47086 * 270.00046 * 8 6 4 10 10 H 1.48495 * 109.47175 * 29.99866 * 8 6 4 11 11 H 1.48497 * 109.46842 * 150.00101 * 8 6 4 12 12 N 1.46899 * 109.46598 * 119.99551 * 2 1 3 13 13 C 1.46896 * 111.00134 * 275.00079 * 12 2 1 14 14 C 1.50696 * 109.47170 * 180.02562 * 13 12 2 15 15 C 1.36095 * 120.12035 * 259.99840 * 14 13 12 16 16 C 1.39424 * 121.05051 * 179.97438 * 15 14 13 17 17 Cl 1.73603 * 119.57368 * 179.97438 * 16 15 14 18 18 C 1.36275 * 120.84547 * 359.97438 * 16 15 14 19 19 C 1.40371 * 119.60945 * 359.97438 * 18 16 15 20 20 C 1.40780 * 121.37845 * 180.02562 * 19 18 16 21 21 C 1.36574 * 118.15433 * 179.97438 * 20 19 18 22 22 C 1.39335 * 119.93532 * 359.97438 * 21 20 19 23 23 N 1.31077 * 121.75550 * 359.97438 * 22 21 20 24 24 C 1.33683 * 121.32807 * 359.75209 * 23 22 21 25 25 H 1.08995 * 109.47876 * 294.98324 * 1 2 3 26 26 H 1.09008 * 109.47161 * 54.98345 * 1 2 3 27 27 H 1.09004 * 109.47188 * 174.97678 * 1 2 3 28 28 H 0.97010 * 119.99945 * 355.00148 * 7 6 4 29 29 H 1.00902 * 111.00082 * 38.95438 * 12 2 1 30 30 H 1.09006 * 109.47351 * 300.00205 * 13 12 2 31 31 H 1.09004 * 109.47195 * 60.00259 * 13 12 2 32 32 H 1.07997 * 119.46846 * 359.97438 * 15 14 13 33 33 H 1.08000 * 120.19898 * 180.02562 * 18 16 15 34 34 H 1.07997 * 120.92647 * 0.02562 * 20 19 18 35 35 H 1.07996 * 120.03211 * 180.02562 * 21 20 19 36 36 H 1.08004 * 119.11984 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5798 -1.6365 -1.1336 6 6 1.7931 -0.1784 -2.4797 7 7 2.1414 -0.8474 -3.5570 8 14 0.9743 1.4927 -2.6419 9 1 -0.4989 1.3177 -2.7074 10 1 1.3215 2.3303 -1.4660 11 1 1.4494 2.1583 -3.8815 12 7 2.0195 -0.6924 1.1995 13 6 2.0823 0.2227 2.3469 14 6 2.5882 -0.5213 3.5558 15 6 1.7138 -0.9681 4.4981 16 6 2.1605 -1.6589 5.6238 17 17 1.0115 -2.2109 6.8022 18 6 3.4875 -1.9063 5.8107 19 6 4.4170 -1.4607 4.8579 20 6 5.7963 -1.6963 5.0133 21 6 6.6420 -1.2340 4.0458 22 6 6.1311 -0.5511 2.9440 23 7 4.8462 -0.3343 2.8018 24 6 3.9641 -0.7649 3.7093 25 1 -0.3635 0.4340 0.9314 26 1 -0.3634 0.5897 -0.8417 27 1 -0.3634 -1.0237 -0.0900 28 1 2.6312 -1.6806 -3.4734 29 1 1.4494 -1.4978 1.4101 30 1 2.7587 1.0463 2.1182 31 1 1.0868 0.6164 2.5525 32 1 0.6570 -0.7844 4.3719 33 1 3.8220 -2.4428 6.6863 34 1 6.1749 -2.2286 5.8733 35 1 7.7058 -1.3982 4.1342 36 1 6.8119 -0.1909 2.1869 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612584739.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:56:25 Heat of formation + Delta-G solvation = 25.350147 kcal Electronic energy + Delta-G solvation = -20050.141790 eV Core-core repulsion = 16944.846732 eV Total energy + Delta-G solvation = -3105.295058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.088 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.89658 -38.77127 -38.06995 -37.00934 -35.20955 -34.11477 -32.10439 -31.43161 -30.03629 -26.87193 -26.08836 -24.99357 -24.59003 -21.99418 -21.85723 -19.64562 -19.32026 -18.07797 -18.01880 -16.54808 -16.18039 -15.97239 -15.62564 -15.57817 -15.28757 -14.80900 -14.69822 -14.06029 -14.01120 -13.87828 -13.75375 -13.66799 -13.30959 -13.05255 -12.69140 -12.53813 -12.32765 -11.93001 -11.92022 -11.79155 -11.58310 -11.44032 -10.89336 -10.58887 -10.30693 -9.72978 -9.24213 -9.07290 -8.62586 -6.31610 -0.66994 -0.26989 0.95733 1.01839 1.41541 1.53502 1.69475 1.78035 2.48968 3.03593 3.13309 3.33364 3.45260 3.66425 3.75392 3.93740 3.98137 4.04825 4.16211 4.32812 4.47627 4.50662 4.60025 4.66040 4.67412 4.75985 4.90664 4.95093 4.99580 5.02528 5.17749 5.29343 5.42898 5.43930 5.78276 5.85281 6.08256 6.40306 6.69501 6.76990 7.06485 7.48048 8.70266 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.016963 B = 0.004565 C = 0.003799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.271372 B = 6132.085257 C = 7369.294509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.187 3.813 3 H 0.028 0.972 4 C -0.569 4.569 5 H 0.014 0.986 6 C -0.031 4.031 7 N -0.951 5.951 8 Si 1.096 2.904 9 H -0.261 1.261 10 H -0.256 1.256 11 H -0.293 1.293 12 N -0.673 5.673 13 C 0.112 3.888 14 C -0.054 4.054 15 C -0.097 4.097 16 C -0.036 4.036 17 Cl -0.058 7.058 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.055 4.055 21 C -0.165 4.165 22 C 0.117 3.883 23 N -0.494 5.494 24 C 0.119 3.881 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.248 0.752 29 H 0.328 0.672 30 H 0.066 0.934 31 H 0.046 0.954 32 H 0.148 0.852 33 H 0.170 0.830 34 H 0.180 0.820 35 H 0.177 0.823 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.366 -0.034 25.030 25.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.078 3.922 3 H 0.046 0.954 4 C -0.608 4.608 5 H 0.032 0.968 6 C -0.227 4.227 7 N -0.589 5.589 8 Si 0.919 3.081 9 H -0.187 1.187 10 H -0.180 1.180 11 H -0.220 1.220 12 N -0.302 5.302 13 C -0.017 4.017 14 C -0.056 4.056 15 C -0.118 4.118 16 C -0.063 4.063 17 Cl -0.029 7.029 18 C -0.098 4.098 19 C -0.114 4.114 20 C -0.080 4.080 21 C -0.184 4.184 22 C -0.056 4.056 23 N -0.202 5.202 24 C -0.003 4.003 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.145 0.855 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.165 0.835 33 H 0.188 0.812 34 H 0.197 0.803 35 H 0.194 0.806 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.916 1.539 23.164 23.543 hybrid contribution 0.045 -1.918 1.337 2.338 sum 3.961 -0.379 24.500 24.821 Atomic orbital electron populations 1.22652 0.99027 1.01132 1.00454 1.19476 0.90324 0.94109 0.88336 0.95399 1.22247 1.37084 1.08614 0.92835 0.96769 1.27199 0.97245 1.06528 0.91703 1.70938 1.39570 1.17026 1.31388 0.83370 0.76611 0.71809 0.76314 1.18662 1.18028 1.21950 1.60464 1.57980 1.09068 1.02720 1.20684 0.98660 0.94623 0.87707 1.19565 0.91432 0.98647 0.95908 1.20775 1.00905 0.97636 0.92523 1.20574 0.91126 1.01813 0.92788 1.98373 1.59851 1.88197 1.56464 1.21123 0.90229 0.98954 0.99510 1.18963 0.96179 1.00856 0.95442 1.21867 0.90215 0.96043 0.99921 1.22291 1.03297 0.98593 0.94258 1.23569 0.91329 0.93478 0.97186 1.68134 1.04168 1.20069 1.27796 1.18987 0.93707 0.96439 0.91167 0.92080 0.93643 0.93463 0.94294 0.85489 0.91596 0.93593 0.83474 0.81211 0.80271 0.80602 0.81229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.23 8.77 71.98 0.63 -6.60 16 2 C 0.19 9.06 2.15 44.17 0.09 9.16 16 3 H 0.03 1.40 6.30 -2.39 -0.02 1.38 16 4 C -0.57 -34.01 9.20 25.60 0.24 -33.78 16 5 H 0.01 0.95 8.04 -2.91 -0.02 0.92 16 6 C -0.03 -1.87 5.43 84.66 0.46 -1.41 16 7 N -0.95 -62.21 13.70 21.45 0.29 -61.91 16 8 Si 1.10 52.10 25.29 68.60 1.73 53.84 16 9 H -0.26 -11.32 6.81 99.48 0.68 -10.64 16 10 H -0.26 -11.01 6.36 99.48 0.63 -10.37 16 11 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 12 N -0.67 -29.21 6.22 -499.47 -3.11 -32.31 16 13 C 0.11 4.01 5.28 85.56 0.45 4.46 16 14 C -0.05 -1.70 5.40 -19.80 -0.11 -1.81 16 15 C -0.10 -2.49 9.34 22.06 0.21 -2.29 16 16 C -0.04 -0.80 6.28 22.10 0.14 -0.66 16 17 Cl -0.06 -1.08 28.92 -2.72 -0.08 -1.16 16 18 C -0.08 -1.55 9.52 22.33 0.21 -1.34 16 19 C -0.11 -2.66 5.74 -21.28 -0.12 -2.79 16 20 C -0.05 -0.93 9.90 22.50 0.22 -0.71 16 21 C -0.16 -2.88 10.03 22.14 0.22 -2.65 16 22 C 0.12 2.99 11.14 85.07 0.95 3.94 16 23 N -0.49 -17.03 9.60 -188.62 -1.81 -18.84 16 24 C 0.12 3.77 6.59 40.29 0.27 4.03 16 25 H 0.06 2.08 7.35 -2.39 -0.02 2.06 16 26 H 0.04 1.90 4.40 -2.38 -0.01 1.89 16 27 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.25 16.59 8.72 -92.70 -0.81 15.78 16 29 H 0.33 13.67 8.47 -89.69 -0.76 12.91 16 30 H 0.07 2.59 7.79 -2.38 -0.02 2.58 16 31 H 0.05 1.45 7.19 -2.39 -0.02 1.43 16 32 H 0.15 3.31 8.00 -2.91 -0.02 3.28 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 34 H 0.18 1.47 8.06 -2.91 -0.02 1.44 16 35 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 36 H 0.17 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -75.26 315.41 1.10 -74.15 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.21 Total: 18.69 kcal Atomic # 6 Polarization: -36.30 SS G_CDS: 3.86 Total: -32.44 kcal Atomic # 7 Polarization: -108.45 SS G_CDS: -4.62 Total: -113.07 kcal Atomic # 14 Polarization: 52.10 SS G_CDS: 1.73 Total: 53.84 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -75.26 1.10 -74.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612584739.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.505 kcal (2) G-P(sol) polarization free energy of solvation -75.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds