Wall clock time and date at job start Tue Mar 31 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38679 * 120.79031 * 2 1 4 4 C 1.38182 * 119.16459 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76174 * 359.74190 * 4 3 2 6 6 C 1.31850 * 121.72987 * 0.52781 * 5 4 3 7 7 C 1.50702 * 119.61981 * 179.75524 * 6 5 4 8 8 S 1.80999 * 109.46668 * 269.71913 * 7 6 5 9 9 C 1.76199 * 99.99815 * 179.97438 * 8 7 6 10 10 N 1.32388 * 126.26079 * 359.97438 * 9 8 7 11 11 N 1.28511 * 110.20972 * 180.02562 * 10 9 8 12 12 C 1.33102 * 109.74196 * 0.02562 * 11 10 9 13 13 C 1.39784 * 126.56422 * 179.97438 * 12 11 10 14 14 H 1.07990 * 119.99937 * 186.21013 * 13 12 11 15 15 C 1.40079 * 119.99787 * 6.21173 * 13 12 11 16 16 N 1.30818 * 120.00007 * 6.44701 * 15 13 12 17 17 Si 1.86802 * 120.00049 * 186.44417 * 15 13 12 18 18 H 1.48499 * 109.47321 * 265.01629 * 17 15 13 19 19 H 1.48499 * 109.46774 * 25.01756 * 17 15 13 20 20 H 1.48500 * 109.47127 * 145.01048 * 17 15 13 21 21 N 1.36673 * 126.25843 * 180.30346 * 9 8 7 22 22 C 1.46491 * 127.15480 * 359.97438 * 21 9 8 23 23 C 1.38237 * 120.76071 * 359.46998 * 6 5 4 24 24 H 1.08991 * 109.47335 * 269.98281 * 1 2 3 25 25 H 1.09001 * 109.46652 * 29.98504 * 1 2 3 26 26 H 1.08998 * 109.46572 * 149.98048 * 1 2 3 27 27 H 1.07995 * 120.41603 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.61517 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.47121 * 149.72499 * 7 6 5 30 30 H 1.08993 * 109.47471 * 29.72189 * 7 6 5 31 31 H 0.97004 * 120.00095 * 179.97438 * 16 15 13 32 32 H 1.09010 * 109.46877 * 270.13447 * 22 21 9 33 33 H 1.09003 * 109.47456 * 30.12807 * 22 21 9 34 34 H 1.08999 * 109.47490 * 150.13479 * 22 21 9 35 35 H 1.08003 * 120.41606 * 180.27785 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1521 -0.0005 5 7 4.2403 0.0001 0.0041 6 6 3.5984 -1.1516 -0.0010 7 6 4.3802 -2.4400 -0.0010 8 16 4.6924 -2.9561 -1.7075 9 6 5.5947 -4.4415 -1.4176 10 7 5.9055 -4.9509 -0.2359 11 7 6.5685 -6.0419 -0.3832 12 6 6.7254 -6.3011 -1.6792 13 6 7.3918 -7.3973 -2.2345 14 1 7.5434 -7.4528 -3.3022 15 6 7.8630 -8.4237 -1.4058 16 7 7.5710 -8.4209 -0.1306 17 14 8.9083 -9.7964 -2.1216 18 1 8.0409 -10.9523 -2.4635 19 1 9.5915 -9.3106 -3.3473 20 1 9.9236 -10.2176 -1.1231 21 7 6.1072 -5.2752 -2.3717 22 6 6.0181 -5.1169 -3.8253 23 6 2.2166 -1.1908 -0.0005 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3632 -0.8898 -0.5141 27 1 1.6967 2.1377 -0.0004 28 1 4.1583 2.0755 -0.0010 29 1 3.8079 -3.2122 0.5132 30 1 5.3296 -2.2889 0.5124 31 1 7.8970 -9.1318 0.4432 32 1 5.1170 -5.6102 -4.1899 33 1 5.9775 -4.0563 -4.0736 34 1 6.8934 -5.5665 -4.2941 35 1 1.6965 -2.1374 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619460727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:58 Heat of formation + Delta-G solvation = 95.229296 kcal Electronic energy + Delta-G solvation = -19343.429331 eV Core-core repulsion = 16275.500918 eV Total energy + Delta-G solvation = -3067.928413 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.49903 -40.31965 -34.26393 -33.69037 -33.33162 -32.66802 -29.35282 -28.10738 -27.59464 -26.44444 -25.46739 -23.22026 -21.38219 -20.79922 -20.29959 -17.36513 -16.70165 -16.52297 -16.06278 -15.46032 -15.34200 -14.84204 -14.70288 -14.27863 -13.72696 -13.45939 -13.24198 -13.06278 -12.77619 -12.64935 -12.54749 -12.22113 -12.21040 -11.59015 -11.38167 -11.28959 -10.92539 -10.46438 -10.35156 -9.72193 -9.59801 -9.57952 -9.48811 -9.00147 -8.69299 -8.43384 -8.36277 -6.82269 -6.65936 -4.56066 0.86217 1.16165 2.16302 2.80180 2.91995 3.07175 3.11328 3.36697 3.79639 3.88369 4.19533 4.25215 4.42403 4.46876 4.56907 4.94009 5.02822 5.18371 5.28483 5.32773 5.38518 5.46621 5.56279 5.66568 5.71253 5.90064 5.98854 6.05277 6.07433 6.17445 6.61691 6.77760 6.90238 7.24720 7.49500 7.89346 7.96071 8.18827 8.70828 8.86604 10.27701 10.63904 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.040205 B = 0.003147 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.270685 B = 8894.255467 C = 9028.060313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.044 4.044 3 C -0.179 4.179 4 C 0.104 3.896 5 N -0.474 5.474 6 C 0.152 3.848 7 C -0.047 4.047 8 S -0.034 6.034 9 C 0.044 3.956 10 N -0.285 5.285 11 N -0.335 5.335 12 C 0.349 3.651 13 C -0.449 4.449 14 H 0.084 0.916 15 C 0.080 3.920 16 N -0.738 5.738 17 Si 0.920 3.080 18 H -0.270 1.270 19 H -0.262 1.262 20 H -0.274 1.274 21 N -0.515 5.515 22 C 0.102 3.898 23 C -0.156 4.156 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.133 0.867 28 H 0.156 0.844 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.280 0.720 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.852 13.561 -2.936 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.052 4.052 3 C -0.200 4.200 4 C -0.053 4.053 5 N -0.185 5.185 6 C 0.013 3.987 7 C -0.196 4.196 8 S 0.193 5.807 9 C -0.328 4.328 10 N -0.131 5.131 11 N -0.183 5.183 12 C 0.104 3.896 13 C -0.489 4.489 14 H 0.102 0.898 15 C -0.146 4.146 16 N -0.362 5.362 17 Si 0.744 3.256 18 H -0.195 1.195 19 H -0.186 1.186 20 H -0.199 1.199 21 N -0.217 5.217 22 C -0.043 4.043 23 C -0.178 4.178 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.151 0.849 28 H 0.173 0.827 29 H 0.125 0.875 30 H 0.128 0.872 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.135 13.813 -2.202 17.274 hybrid contribution -0.069 -1.138 -0.659 1.317 sum -10.205 12.675 -2.861 16.522 Atomic orbital electron populations 1.20823 0.90187 1.03372 1.02865 1.20321 0.96784 0.92860 0.95226 1.22028 0.95708 0.98541 1.03684 1.22741 0.91703 0.95974 0.94917 1.67484 1.41287 0.97913 1.11770 1.20570 0.90693 0.92617 0.94810 1.22115 1.04439 0.94824 0.98186 1.84540 1.67891 1.19911 1.08317 1.25328 1.15393 1.02154 0.89877 1.74520 1.12636 1.06808 1.19098 1.75416 1.22187 1.08427 1.12233 1.21618 0.92538 0.88201 0.87223 1.18096 1.34301 1.01496 0.95003 0.89764 1.25787 0.95581 0.98685 0.94506 1.69992 1.32546 1.29101 1.04546 0.86115 0.79639 0.80175 0.79669 1.19489 1.18572 1.19897 1.46044 1.48104 1.21885 1.05677 1.21494 1.02371 1.01458 0.79014 1.21908 0.94519 0.99165 1.02162 0.90528 0.91086 0.90839 0.84932 0.82660 0.87493 0.87186 0.90946 0.92493 0.91587 0.90349 0.84377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.81 10.06 36.01 0.36 -0.44 16 2 C -0.04 -0.45 5.92 -104.32 -0.62 -1.06 16 3 C -0.18 -1.71 9.82 -39.44 -0.39 -2.10 16 4 C 0.10 1.18 11.18 -17.55 -0.20 0.99 16 5 N -0.47 -7.08 10.27 -9.47 -0.10 -7.18 16 6 C 0.15 2.26 6.04 -82.58 -0.50 1.76 16 7 C -0.05 -0.80 5.51 36.01 0.20 -0.61 16 8 S -0.03 -0.65 21.77 -107.50 -2.34 -3.00 16 9 C 0.04 1.09 8.09 -87.28 -0.71 0.38 16 10 N -0.28 -7.94 11.62 30.89 0.36 -7.58 16 11 N -0.34 -10.22 10.56 31.26 0.33 -9.89 16 12 C 0.35 9.88 7.50 -154.80 -1.16 8.72 16 13 C -0.45 -12.00 9.05 -38.31 -0.35 -12.35 16 14 H 0.08 2.04 7.26 -52.49 -0.38 1.66 16 15 C 0.08 2.06 5.49 -17.29 -0.09 1.96 16 16 N -0.74 -20.42 12.00 55.56 0.67 -19.75 16 17 Si 0.92 18.63 29.57 -169.99 -5.03 13.61 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 21 N -0.51 -12.70 3.26 -123.17 -0.40 -13.10 16 22 C 0.10 1.90 10.89 59.84 0.65 2.55 16 23 C -0.16 -1.93 9.45 -39.44 -0.37 -2.30 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 26 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.16 1.30 8.06 -52.49 -0.42 0.88 16 29 H 0.11 1.83 8.08 -51.91 -0.42 1.41 16 30 H 0.11 2.08 8.14 -51.92 -0.42 1.66 16 31 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 32 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 33 H 0.07 1.10 7.85 -51.93 -0.41 0.69 16 34 H 0.08 1.37 7.48 -51.93 -0.39 0.98 16 35 H 0.14 1.53 8.06 -52.48 -0.42 1.11 16 LS Contribution 323.13 15.07 4.87 4.87 Total: -1.00 -34.27 323.13 -8.92 -43.19 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -4.11 Total: 1.33 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: -3.17 Total: -2.50 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.86 Total: -57.50 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Atomic # 16 Polarization: -0.65 SS G_CDS: -2.34 Total: -3.00 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.27 -8.92 -43.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619460727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.419 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds