Wall clock time and date at job start Tue Mar 31 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38679 * 120.79031 * 2 1 4 4 C 1.38182 * 119.16459 * 180.02562 * 3 2 1 5 5 N 1.31886 * 120.76174 * 359.74190 * 4 3 2 6 6 C 1.31850 * 121.72987 * 0.52781 * 5 4 3 7 7 C 1.50702 * 119.61981 * 179.75524 * 6 5 4 8 8 S 1.80999 * 109.46668 * 269.71913 * 7 6 5 9 9 C 1.76199 * 99.99815 * 179.97438 * 8 7 6 10 10 N 1.32388 * 126.26079 * 359.97438 * 9 8 7 11 11 N 1.28511 * 110.20972 * 180.02562 * 10 9 8 12 12 C 1.33102 * 109.74196 * 0.02562 * 11 10 9 13 13 C 1.39784 * 126.56422 * 179.97438 * 12 11 10 14 14 H 1.07990 * 119.99937 * 186.21013 * 13 12 11 15 15 C 1.40079 * 119.99787 * 6.21173 * 13 12 11 16 16 N 1.30818 * 120.00007 * 6.44701 * 15 13 12 17 17 Si 1.86802 * 120.00049 * 186.44417 * 15 13 12 18 18 H 1.48499 * 109.47321 * 265.01629 * 17 15 13 19 19 H 1.48499 * 109.46774 * 25.01756 * 17 15 13 20 20 H 1.48500 * 109.47127 * 145.01048 * 17 15 13 21 21 N 1.36673 * 126.25843 * 180.30346 * 9 8 7 22 22 C 1.46491 * 127.15480 * 359.97438 * 21 9 8 23 23 C 1.38237 * 120.76071 * 359.46998 * 6 5 4 24 24 H 1.08991 * 109.47335 * 269.98281 * 1 2 3 25 25 H 1.09001 * 109.46652 * 29.98504 * 1 2 3 26 26 H 1.08998 * 109.46572 * 149.98048 * 1 2 3 27 27 H 1.07995 * 120.41603 * 359.97438 * 3 2 1 28 28 H 1.07995 * 119.61517 * 179.97438 * 4 3 2 29 29 H 1.09006 * 109.47121 * 149.72499 * 7 6 5 30 30 H 1.08993 * 109.47471 * 29.72189 * 7 6 5 31 31 H 0.97004 * 120.00095 * 179.97438 * 16 15 13 32 32 H 1.09010 * 109.46877 * 270.13447 * 22 21 9 33 33 H 1.09003 * 109.47456 * 30.12807 * 22 21 9 34 34 H 1.08999 * 109.47490 * 150.13479 * 22 21 9 35 35 H 1.08003 * 120.41606 * 180.27785 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2169 1.1913 0.0000 4 6 3.5982 1.1521 -0.0005 5 7 4.2403 0.0001 0.0041 6 6 3.5984 -1.1516 -0.0010 7 6 4.3802 -2.4400 -0.0010 8 16 4.6924 -2.9561 -1.7075 9 6 5.5947 -4.4415 -1.4176 10 7 5.9055 -4.9509 -0.2359 11 7 6.5685 -6.0419 -0.3832 12 6 6.7254 -6.3011 -1.6792 13 6 7.3918 -7.3973 -2.2345 14 1 7.5434 -7.4528 -3.3022 15 6 7.8630 -8.4237 -1.4058 16 7 7.5710 -8.4209 -0.1306 17 14 8.9083 -9.7964 -2.1216 18 1 8.0409 -10.9523 -2.4635 19 1 9.5915 -9.3106 -3.3473 20 1 9.9236 -10.2176 -1.1231 21 7 6.1072 -5.2752 -2.3717 22 6 6.0181 -5.1169 -3.8253 23 6 2.2166 -1.1908 -0.0005 24 1 -0.3633 -0.0003 1.0276 25 1 -0.3633 0.8901 -0.5136 26 1 -0.3632 -0.8898 -0.5141 27 1 1.6967 2.1377 -0.0004 28 1 4.1583 2.0755 -0.0010 29 1 3.8079 -3.2122 0.5132 30 1 5.3296 -2.2889 0.5124 31 1 7.8970 -9.1318 0.4432 32 1 5.1170 -5.6102 -4.1899 33 1 5.9775 -4.0563 -4.0736 34 1 6.8934 -5.5665 -4.2941 35 1 1.6965 -2.1374 -0.0001 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619460727.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:07:57 Heat of formation + Delta-G solvation = 74.133421 kcal Electronic energy + Delta-G solvation = -19344.344117 eV Core-core repulsion = 16275.500918 eV Total energy + Delta-G solvation = -3068.843199 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.47931 -41.24715 -35.64116 -35.24067 -35.04718 -33.72230 -31.34940 -29.06127 -28.60299 -28.13057 -27.36046 -24.12130 -22.85077 -22.63717 -21.83431 -19.28552 -18.03032 -17.64806 -17.30142 -17.02182 -16.57705 -16.45027 -16.17927 -15.79764 -15.09658 -14.70218 -14.42071 -14.23572 -13.93788 -13.83779 -13.63679 -13.49085 -13.30652 -13.14318 -12.96434 -12.75418 -12.36168 -12.07542 -11.95485 -11.71800 -11.42570 -10.60964 -10.46633 -10.43935 -10.42176 -10.28777 -9.94774 -8.59472 -8.55319 -6.59596 -0.20912 0.29267 0.65941 1.17988 1.22002 1.41719 1.58467 1.60950 2.18167 2.42447 2.48859 2.85597 3.13702 3.32328 3.57169 3.85648 4.05149 4.06075 4.16542 4.25775 4.43281 4.43631 4.59642 4.62691 4.72259 4.82518 4.85725 4.88085 4.94695 5.02285 5.24118 5.30661 5.38639 5.54605 5.77584 6.00420 6.21073 6.74460 6.90558 7.01669 8.39784 8.61279 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.040205 B = 0.003147 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.270685 B = 8894.255467 C = 9028.060313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.044 4.044 3 C -0.163 4.163 4 C 0.094 3.906 5 N -0.511 5.511 6 C 0.125 3.875 7 C -0.040 4.040 8 S 0.010 5.990 9 C 0.053 3.947 10 N -0.329 5.329 11 N -0.391 5.391 12 C 0.320 3.680 13 C -0.473 4.473 14 H 0.104 0.896 15 C 0.030 3.970 16 N -0.789 5.789 17 Si 1.008 2.992 18 H -0.259 1.259 19 H -0.248 1.248 20 H -0.272 1.272 21 N -0.522 5.522 22 C 0.093 3.907 23 C -0.162 4.162 24 H 0.088 0.912 25 H 0.092 0.908 26 H 0.075 0.925 27 H 0.173 0.827 28 H 0.183 0.817 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.285 0.715 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.288 15.148 -4.831 20.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.052 4.052 3 C -0.183 4.183 4 C -0.064 4.064 5 N -0.222 5.222 6 C -0.013 4.013 7 C -0.189 4.189 8 S 0.237 5.763 9 C -0.321 4.321 10 N -0.174 5.174 11 N -0.238 5.238 12 C 0.074 3.926 13 C -0.513 4.513 14 H 0.122 0.878 15 C -0.191 4.191 16 N -0.414 5.414 17 Si 0.826 3.174 18 H -0.183 1.183 19 H -0.171 1.171 20 H -0.196 1.196 21 N -0.223 5.223 22 C -0.049 4.049 23 C -0.184 4.184 24 H 0.107 0.893 25 H 0.110 0.890 26 H 0.094 0.906 27 H 0.190 0.810 28 H 0.200 0.800 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -11.584 15.411 -4.115 19.714 hybrid contribution 0.203 -1.345 -0.068 1.361 sum -11.382 14.067 -4.183 18.572 Atomic orbital electron populations 1.20907 0.87541 1.04591 1.03981 1.20754 0.98616 0.92112 0.93694 1.22473 0.95024 0.99990 1.00817 1.23290 0.93096 0.95647 0.94352 1.67369 1.42790 0.98878 1.13163 1.20224 0.91389 0.91564 0.98096 1.22060 1.03629 0.96583 0.96639 1.84303 1.66071 1.16062 1.09827 1.26373 1.13211 1.03172 0.89364 1.74396 1.14633 1.07318 1.21011 1.75271 1.24218 1.10005 1.14263 1.22053 0.93572 0.89652 0.87365 1.18630 1.34741 1.01665 0.96226 0.87766 1.27009 0.96310 1.01242 0.94539 1.70137 1.34168 1.30583 1.06548 0.84827 0.77417 0.76143 0.78979 1.18306 1.17110 1.19634 1.46388 1.47223 1.20926 1.07782 1.21858 1.03898 1.03397 0.75787 1.22039 0.93543 1.00721 1.02120 0.89302 0.88970 0.90597 0.80979 0.80006 0.88075 0.89688 0.90447 0.90612 0.89352 0.89114 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.16 10.06 71.24 0.72 -0.44 16 2 C -0.04 -0.76 5.92 -19.67 -0.12 -0.88 16 3 C -0.16 -2.52 9.82 22.36 0.22 -2.30 16 4 C 0.09 1.92 11.18 84.67 0.95 2.86 16 5 N -0.51 -15.03 10.27 -183.88 -1.89 -16.92 16 6 C 0.12 3.73 6.04 42.56 0.26 3.99 16 7 C -0.04 -1.43 5.51 71.24 0.39 -1.04 16 8 S 0.01 0.37 21.77 -56.49 -1.23 -0.86 16 9 C 0.05 2.66 8.09 179.18 1.45 4.11 16 10 N -0.33 -19.35 11.62 -56.17 -0.65 -20.01 16 11 N -0.39 -25.14 10.56 -55.01 -0.58 -25.72 16 12 C 0.32 18.76 7.50 133.23 1.00 19.76 16 13 C -0.47 -25.71 9.05 23.09 0.21 -25.50 16 14 H 0.10 5.01 7.26 -2.92 -0.02 4.98 16 15 C 0.03 1.56 5.49 85.29 0.47 2.02 16 16 N -0.79 -45.44 12.00 21.85 0.26 -45.18 16 17 Si 1.01 38.20 29.57 68.60 2.03 40.22 16 18 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 19 H -0.25 -8.74 7.11 99.48 0.71 -8.04 16 20 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 21 N -0.52 -26.11 3.26 -543.61 -1.77 -27.88 16 22 C 0.09 3.38 10.89 127.77 1.39 4.77 16 23 C -0.16 -3.84 9.45 22.36 0.21 -3.63 16 24 H 0.09 0.74 8.14 -2.39 -0.02 0.73 16 25 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 26 H 0.08 0.77 8.10 -2.39 -0.02 0.75 16 27 H 0.17 1.30 8.06 -2.91 -0.02 1.27 16 28 H 0.18 2.54 8.06 -2.91 -0.02 2.52 16 29 H 0.10 3.67 8.08 -2.39 -0.02 3.65 16 30 H 0.08 3.45 8.14 -2.40 -0.02 3.43 16 31 H 0.29 14.78 8.30 -92.71 -0.77 14.01 16 32 H 0.08 2.46 8.14 -2.38 -0.02 2.44 16 33 H 0.09 2.77 7.85 -2.39 -0.02 2.75 16 34 H 0.09 3.04 7.48 -2.39 -0.02 3.02 16 35 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -79.80 323.13 4.42 -75.38 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 1.11 Total: 17.24 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 7.14 Total: 3.71 kcal Atomic # 7 Polarization: -131.08 SS G_CDS: -4.63 Total: -135.71 kcal Atomic # 14 Polarization: 38.20 SS G_CDS: 2.03 Total: 40.22 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.23 Total: -0.86 kcal Total: -79.80 4.42 -75.38 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619460727.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.517 kcal (2) G-P(sol) polarization free energy of solvation -79.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds