Wall clock time and date at job start Tue Mar 31 2020 08:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00421 * 2 1 4 4 H 1.08002 * 120.00302 * 177.37806 * 3 2 1 5 5 C 1.38821 * 119.99811 * 357.38772 * 3 2 1 6 6 N 1.31616 * 119.99683 * 33.97583 * 5 3 2 7 7 Si 1.86793 * 119.99826 * 213.97655 * 5 3 2 8 8 H 1.48497 * 109.47292 * 94.99945 * 7 5 3 9 9 H 1.48502 * 109.46952 * 214.99641 * 7 5 3 10 10 H 1.48502 * 109.47420 * 334.99344 * 7 5 3 11 11 C 1.46506 * 119.99595 * 180.28197 * 2 1 3 12 12 N 1.46500 * 109.46880 * 269.72076 * 11 2 1 13 13 C 1.34966 * 126.84098 * 274.18018 * 12 11 2 14 14 S 1.71205 * 125.83086 * 359.97438 * 13 12 11 15 15 N 1.34344 * 108.34346 * 179.83459 * 13 12 11 16 16 C 1.30713 * 110.02598 * 0.43903 * 15 13 12 17 17 N 1.36020 * 108.75678 * 359.73265 * 16 15 13 18 18 C 1.39824 * 126.72243 * 179.97438 * 17 16 15 19 19 C 1.38896 * 120.07236 * 34.50262 * 18 17 16 20 20 C 1.38113 * 119.92139 * 179.72440 * 19 18 17 21 21 C 1.38283 * 120.07243 * 0.57708 * 20 19 18 22 22 C 1.38280 * 120.14998 * 359.69521 * 21 20 19 23 23 C 1.38109 * 120.07505 * 0.02562 * 22 21 20 24 24 H 1.08993 * 109.47233 * 275.72393 * 1 2 3 25 25 H 1.09004 * 109.47163 * 35.72157 * 1 2 3 26 26 H 1.09000 * 109.47613 * 155.71604 * 1 2 3 27 27 H 0.97000 * 119.99777 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47426 * 29.72139 * 11 2 1 29 29 H 1.09003 * 109.46953 * 149.72490 * 11 2 1 30 30 H 1.07997 * 125.62168 * 179.75908 * 16 15 13 31 31 H 1.07999 * 120.03820 * 359.97438 * 19 18 17 32 32 H 1.08004 * 119.96046 * 180.31707 * 20 19 18 33 33 H 1.08006 * 119.92386 * 179.72692 * 21 20 19 34 34 H 1.07998 * 119.96414 * 180.02562 * 22 21 20 35 35 H 1.07993 * 120.03986 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2289 1.1863 0.0428 5 6 1.4567 2.3875 -0.0548 6 7 0.2849 2.4987 0.5340 7 14 2.1874 3.8463 -0.9642 8 1 1.6542 3.8836 -2.3496 9 1 1.8231 5.1017 -0.2597 10 1 3.6659 3.7135 -1.0062 11 6 2.1974 -1.2688 -0.0062 12 7 2.4473 -1.6951 1.3729 13 6 3.4814 -1.3278 2.1587 14 16 4.7504 -0.2678 1.7147 15 7 3.3432 -1.9335 3.3498 16 6 2.2691 -2.6784 3.3513 17 7 1.6617 -2.5724 2.1389 18 6 0.4859 -3.2117 1.7341 19 6 -0.5342 -3.4373 2.6494 20 6 -1.6966 -4.0641 2.2448 21 6 -1.8405 -4.4774 0.9331 22 6 -0.8246 -4.2594 0.0207 23 6 0.3381 -3.6281 0.4172 24 1 -0.3633 0.1025 1.0225 25 1 -0.3634 0.8343 -0.6000 26 1 -0.3634 -0.9367 -0.4226 27 1 -0.1995 3.3382 0.4954 28 1 1.6062 -2.0272 -0.5195 29 1 3.1477 -1.1372 -0.5237 30 1 1.9210 -3.2786 4.1789 31 1 -0.4202 -3.1195 3.6752 32 1 -2.4923 -4.2352 2.9548 33 1 -2.7488 -4.9712 0.6204 34 1 -0.9403 -4.5831 -1.0031 35 1 1.1310 -3.4578 -0.2959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725772491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:06 Heat of formation + Delta-G solvation = 182.765045 kcal Electronic energy + Delta-G solvation = -21107.633662 eV Core-core repulsion = 18043.501084 eV Total energy + Delta-G solvation = -3064.132578 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.76045 -39.15577 -36.50559 -33.97919 -33.17856 -31.33107 -31.08694 -29.31697 -26.77813 -26.34258 -23.96543 -23.42251 -22.22508 -21.47183 -20.98812 -18.42314 -17.33189 -16.78331 -16.20627 -15.94783 -15.66948 -14.85991 -14.62042 -14.47105 -14.31695 -14.00472 -13.91828 -13.54113 -13.03979 -12.58858 -12.14953 -11.77073 -11.55918 -11.45953 -11.03348 -10.86657 -10.68665 -10.45996 -10.38495 -10.28797 -10.07366 -9.71256 -9.22075 -8.96088 -8.63743 -7.93908 -6.60815 -6.52930 -6.32661 -3.48279 0.68922 1.11057 1.26036 1.82528 3.16811 3.19012 3.25114 3.32772 3.36345 3.53689 3.92824 4.08169 4.52924 4.58305 4.66555 4.75404 4.85085 4.87546 5.04390 5.13838 5.23106 5.46295 5.58782 5.71096 5.97467 6.05672 6.09700 6.13125 6.26098 6.54789 6.60266 6.68112 6.97849 6.98789 7.44616 7.51884 7.59569 8.22945 8.51478 9.05864 9.42480 10.44315 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015405 B = 0.006756 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.176397 B = 4143.616628 C = 5364.880139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.497 5.497 3 C -0.249 4.249 4 H 0.130 0.870 5 C 0.017 3.983 6 N -0.847 5.847 7 Si 0.918 3.082 8 H -0.278 1.278 9 H -0.285 1.285 10 H -0.261 1.261 11 C 0.288 3.712 12 N -0.348 5.348 13 C 0.451 3.549 14 S -0.632 6.632 15 N -0.522 5.522 16 C 0.315 3.685 17 N -0.359 5.359 18 C 0.154 3.846 19 C -0.131 4.131 20 C -0.093 4.093 21 C -0.130 4.130 22 C -0.093 4.093 23 C -0.134 4.134 24 H 0.033 0.967 25 H 0.080 0.920 26 H 0.019 0.981 27 H 0.270 0.730 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.218 0.782 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.130 0.870 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 -14.906 -0.693 17.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.204 5.204 3 C -0.383 4.383 4 H 0.148 0.852 5 C -0.190 4.190 6 N -0.484 5.484 7 Si 0.744 3.256 8 H -0.205 1.205 9 H -0.211 1.211 10 H -0.185 1.185 11 C 0.081 3.919 12 N -0.150 5.150 13 C 0.086 3.914 14 S -0.501 6.501 15 N -0.250 5.250 16 C 0.018 3.982 17 N -0.143 5.143 18 C 0.060 3.940 19 C -0.153 4.153 20 C -0.112 4.112 21 C -0.149 4.149 22 C -0.112 4.112 23 C -0.154 4.154 24 H 0.051 0.949 25 H 0.099 0.901 26 H 0.037 0.963 27 H 0.080 0.920 28 H 0.101 0.899 29 H 0.134 0.866 30 H 0.234 0.766 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.148 0.852 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -8.877 -13.815 -0.862 16.443 hybrid contribution -1.168 0.203 -0.184 1.200 sum -10.044 -13.612 -1.046 16.949 Atomic orbital electron populations 1.21605 0.81517 0.98491 1.00762 1.46254 1.03813 1.03012 1.67334 1.20715 0.94239 0.82040 1.41338 0.85237 1.25324 0.96412 0.99239 0.97990 1.70339 1.15419 1.27196 1.35448 0.85978 0.80430 0.79755 0.79461 1.20451 1.21120 1.18516 1.23516 0.98578 0.85887 0.83896 1.59412 1.15429 1.29279 1.10902 1.25393 0.89345 0.90505 0.86161 1.92609 1.30136 1.42822 1.84544 1.71659 1.18135 1.13849 1.21399 1.26510 0.89020 0.94766 0.87905 1.48914 1.18965 1.34869 1.11572 1.17869 0.85569 0.95705 0.94875 1.21013 0.92533 1.02029 0.99721 1.21002 0.96526 0.97269 0.96367 1.21195 0.99276 1.00969 0.93480 1.21032 0.92661 0.97605 0.99908 1.21188 0.99530 0.99927 0.94766 0.94889 0.90113 0.96251 0.92035 0.89946 0.86579 0.76557 0.85246 0.85170 0.85582 0.85224 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.57 9.22 59.85 0.55 3.12 16 2 N -0.50 -11.32 3.17 -184.86 -0.59 -11.91 16 3 C -0.25 -6.45 9.57 -15.06 -0.14 -6.60 16 4 H 0.13 3.60 6.60 -52.49 -0.35 3.25 16 5 C 0.02 0.43 4.84 -17.43 -0.08 0.35 16 6 N -0.85 -22.05 10.82 55.49 0.60 -21.45 16 7 Si 0.92 20.47 29.67 -169.99 -5.04 15.43 16 8 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 9 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.26 -5.98 7.11 56.52 0.40 -5.57 16 11 C 0.29 5.68 6.25 -63.74 -0.40 5.29 16 12 N -0.35 -7.09 3.87 -65.29 -0.25 -7.35 16 13 C 0.45 10.68 8.09 -87.13 -0.70 9.98 16 14 S -0.63 -17.23 29.09 -107.50 -3.13 -20.35 16 15 N -0.52 -11.02 11.21 -14.70 -0.16 -11.18 16 16 C 0.31 4.93 11.97 -89.30 -1.07 3.86 16 17 N -0.36 -5.91 3.77 -11.59 -0.04 -5.95 16 18 C 0.15 2.06 6.31 -83.72 -0.53 1.53 16 19 C -0.13 -1.43 9.56 -39.38 -0.38 -1.80 16 20 C -0.09 -0.83 10.04 -39.61 -0.40 -1.22 16 21 C -0.13 -1.12 10.04 -39.55 -0.40 -1.51 16 22 C -0.09 -0.90 10.04 -39.61 -0.40 -1.29 16 23 C -0.13 -1.62 8.76 -39.38 -0.34 -1.97 16 24 H 0.03 0.78 8.01 -51.93 -0.42 0.37 16 25 H 0.08 1.85 6.24 -51.93 -0.32 1.53 16 26 H 0.02 0.34 7.82 -51.93 -0.41 -0.06 16 27 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 28 H 0.08 1.34 4.19 -51.93 -0.22 1.12 16 29 H 0.12 2.41 7.73 -51.93 -0.40 2.00 16 30 H 0.22 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.13 1.21 7.79 -52.49 -0.41 0.80 16 32 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 33 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 34 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 35 H 0.13 1.63 5.55 -52.49 -0.29 1.34 16 LS Contribution 312.09 15.07 4.70 4.70 Total: -1.00 -34.07 312.09 -11.84 -45.92 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -3.64 Total: 2.42 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: -4.29 Total: 9.73 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -0.45 Total: -57.83 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.04 Total: 15.43 kcal Atomic # 16 Polarization: -17.23 SS G_CDS: -3.13 Total: -20.35 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -34.07 -11.84 -45.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725772491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.683 kcal (2) G-P(sol) polarization free energy of solvation -34.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds