Wall clock time and date at job start Tue Mar 31 2020 08:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36933 * 120.00421 * 2 1 4 4 H 1.08002 * 120.00302 * 177.37806 * 3 2 1 5 5 C 1.38821 * 119.99811 * 357.38772 * 3 2 1 6 6 N 1.31616 * 119.99683 * 33.97583 * 5 3 2 7 7 Si 1.86793 * 119.99826 * 213.97655 * 5 3 2 8 8 H 1.48497 * 109.47292 * 94.99945 * 7 5 3 9 9 H 1.48502 * 109.46952 * 214.99641 * 7 5 3 10 10 H 1.48502 * 109.47420 * 334.99344 * 7 5 3 11 11 C 1.46506 * 119.99595 * 180.28197 * 2 1 3 12 12 N 1.46500 * 109.46880 * 269.72076 * 11 2 1 13 13 C 1.34966 * 126.84098 * 274.18018 * 12 11 2 14 14 S 1.71205 * 125.83086 * 359.97438 * 13 12 11 15 15 N 1.34344 * 108.34346 * 179.83459 * 13 12 11 16 16 C 1.30713 * 110.02598 * 0.43903 * 15 13 12 17 17 N 1.36020 * 108.75678 * 359.73265 * 16 15 13 18 18 C 1.39824 * 126.72243 * 179.97438 * 17 16 15 19 19 C 1.38896 * 120.07236 * 34.50262 * 18 17 16 20 20 C 1.38113 * 119.92139 * 179.72440 * 19 18 17 21 21 C 1.38283 * 120.07243 * 0.57708 * 20 19 18 22 22 C 1.38280 * 120.14998 * 359.69521 * 21 20 19 23 23 C 1.38109 * 120.07505 * 0.02562 * 22 21 20 24 24 H 1.08993 * 109.47233 * 275.72393 * 1 2 3 25 25 H 1.09004 * 109.47163 * 35.72157 * 1 2 3 26 26 H 1.09000 * 109.47613 * 155.71604 * 1 2 3 27 27 H 0.97000 * 119.99777 * 180.02562 * 6 5 3 28 28 H 1.08998 * 109.47426 * 29.72139 * 11 2 1 29 29 H 1.09003 * 109.46953 * 149.72490 * 11 2 1 30 30 H 1.07997 * 125.62168 * 179.75908 * 16 15 13 31 31 H 1.07999 * 120.03820 * 359.97438 * 19 18 17 32 32 H 1.08004 * 119.96046 * 180.31707 * 20 19 18 33 33 H 1.08006 * 119.92386 * 179.72692 * 21 20 19 34 34 H 1.07998 * 119.96414 * 180.02562 * 22 21 20 35 35 H 1.07993 * 120.03986 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.2289 1.1863 0.0428 5 6 1.4567 2.3875 -0.0548 6 7 0.2849 2.4987 0.5340 7 14 2.1874 3.8463 -0.9642 8 1 1.6542 3.8836 -2.3496 9 1 1.8231 5.1017 -0.2597 10 1 3.6659 3.7135 -1.0062 11 6 2.1974 -1.2688 -0.0062 12 7 2.4473 -1.6951 1.3729 13 6 3.4814 -1.3278 2.1587 14 16 4.7504 -0.2678 1.7147 15 7 3.3432 -1.9335 3.3498 16 6 2.2691 -2.6784 3.3513 17 7 1.6617 -2.5724 2.1389 18 6 0.4859 -3.2117 1.7341 19 6 -0.5342 -3.4373 2.6494 20 6 -1.6966 -4.0641 2.2448 21 6 -1.8405 -4.4774 0.9331 22 6 -0.8246 -4.2594 0.0207 23 6 0.3381 -3.6281 0.4172 24 1 -0.3633 0.1025 1.0225 25 1 -0.3634 0.8343 -0.6000 26 1 -0.3634 -0.9367 -0.4226 27 1 -0.1995 3.3382 0.4954 28 1 1.6062 -2.0272 -0.5195 29 1 3.1477 -1.1372 -0.5237 30 1 1.9210 -3.2786 4.1789 31 1 -0.4202 -3.1195 3.6752 32 1 -2.4923 -4.2352 2.9548 33 1 -2.7488 -4.9712 0.6204 34 1 -0.9403 -4.5831 -1.0031 35 1 1.1310 -3.4578 -0.2959 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725772491.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:13:02 Heat of formation + Delta-G solvation = 162.478638 kcal Electronic energy + Delta-G solvation = -21108.513347 eV Core-core repulsion = 18043.501084 eV Total energy + Delta-G solvation = -3065.012263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.50628 -40.12844 -38.16127 -35.38736 -34.88230 -32.96788 -32.03848 -30.50837 -28.46205 -28.07378 -25.36394 -24.68469 -23.72504 -22.91669 -22.31051 -19.80616 -19.06290 -17.99214 -17.73180 -17.50895 -17.20360 -16.57074 -15.99610 -15.86782 -15.60803 -15.42637 -15.18759 -14.57725 -14.32609 -14.01348 -13.62868 -13.18234 -13.13623 -12.61955 -12.53191 -12.40768 -12.34098 -12.20823 -12.11644 -12.02104 -11.65325 -11.48128 -10.73297 -10.03989 -9.79071 -9.66453 -8.62291 -8.42985 -8.30456 -5.41511 -0.56680 -0.26213 0.30748 0.51059 1.38188 1.41828 1.43073 1.52838 1.56145 2.30129 2.37403 2.69555 2.95514 3.18991 3.24741 3.53412 3.63221 3.80979 3.88548 4.19593 4.32683 4.40556 4.43178 4.45267 4.62126 4.78419 4.93923 4.97043 5.15486 5.28011 5.34665 5.38900 5.49311 5.66855 5.73029 5.89266 6.01420 6.53790 6.76417 7.36595 7.70722 8.72832 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015405 B = 0.006756 C = 0.005218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.176397 B = 4143.616628 C = 5364.880139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.534 5.534 3 C -0.282 4.282 4 H 0.097 0.903 5 C -0.020 4.020 6 N -0.893 5.893 7 Si 0.960 3.040 8 H -0.267 1.267 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.315 3.685 12 N -0.351 5.351 13 C 0.460 3.540 14 S -0.714 6.714 15 N -0.555 5.555 16 C 0.347 3.653 17 N -0.336 5.336 18 C 0.108 3.892 19 C -0.121 4.121 20 C -0.090 4.090 21 C -0.110 4.110 22 C -0.095 4.095 23 C -0.144 4.144 24 H -0.003 1.003 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.263 0.737 28 H 0.126 0.874 29 H 0.101 0.899 30 H 0.295 0.705 31 H 0.150 0.850 32 H 0.166 0.834 33 H 0.161 0.839 34 H 0.155 0.845 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 -20.126 0.560 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 N -0.246 5.246 3 C -0.413 4.413 4 H 0.115 0.885 5 C -0.221 4.221 6 N -0.534 5.534 7 Si 0.786 3.214 8 H -0.192 1.192 9 H -0.217 1.217 10 H -0.205 1.205 11 C 0.109 3.891 12 N -0.150 5.150 13 C 0.090 3.910 14 S -0.585 6.585 15 N -0.284 5.284 16 C 0.053 3.947 17 N -0.120 5.120 18 C 0.017 3.983 19 C -0.142 4.142 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.113 4.113 23 C -0.164 4.164 24 H 0.016 0.984 25 H 0.076 0.924 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.309 0.691 31 H 0.167 0.833 32 H 0.183 0.817 33 H 0.179 0.821 34 H 0.173 0.827 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.250 -19.079 0.367 22.676 hybrid contribution -0.291 0.845 -0.274 0.935 sum -12.542 -18.234 0.092 22.131 Atomic orbital electron populations 1.21194 0.80766 0.99064 0.98316 1.45829 1.03846 1.02302 1.72634 1.20186 0.92817 0.83648 1.44693 0.88550 1.25629 0.97065 1.00398 0.98988 1.70407 1.17039 1.27113 1.38867 0.85382 0.78515 0.78089 0.79407 1.19201 1.21725 1.20498 1.23167 0.98928 0.86925 0.80124 1.56288 1.15583 1.30588 1.12581 1.24383 0.88954 0.90502 0.87120 1.92778 1.33413 1.46432 1.85894 1.71596 1.20943 1.15609 1.20207 1.27671 0.86373 0.92778 0.87871 1.47507 1.19692 1.33680 1.11152 1.18068 0.84622 0.98954 0.96618 1.21298 0.91844 1.00988 1.00103 1.21464 0.96295 0.95775 0.97310 1.21739 0.99717 0.98440 0.92991 1.21372 0.91671 0.96643 1.01618 1.21284 1.00533 1.00621 0.93979 0.98401 0.92425 0.92963 0.92788 0.85694 0.88121 0.69062 0.83267 0.81692 0.82120 0.82695 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 6.54 9.22 127.77 1.18 7.72 16 2 N -0.53 -25.22 3.17 -738.76 -2.34 -27.57 16 3 C -0.28 -15.71 9.57 84.04 0.80 -14.90 16 4 H 0.10 5.88 6.60 -2.91 -0.02 5.86 16 5 C -0.02 -1.11 4.84 84.86 0.41 -0.70 16 6 N -0.89 -49.92 10.82 21.65 0.23 -49.69 16 7 Si 0.96 45.58 29.67 68.60 2.04 47.62 16 8 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 9 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 10 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 11 C 0.32 12.47 6.25 170.96 1.07 13.54 16 12 N -0.35 -13.92 3.87 -360.48 -1.40 -15.32 16 13 C 0.46 21.79 8.09 179.13 1.45 23.24 16 14 S -0.71 -40.83 29.09 -56.49 -1.64 -42.48 16 15 N -0.55 -22.17 11.21 -200.41 -2.25 -24.42 16 16 C 0.35 9.16 11.97 179.89 2.15 11.31 16 17 N -0.34 -9.78 3.77 -190.59 -0.72 -10.50 16 18 C 0.11 2.36 6.31 38.18 0.24 2.60 16 19 C -0.12 -1.84 9.56 22.40 0.21 -1.63 16 20 C -0.09 -0.94 10.04 22.25 0.22 -0.71 16 21 C -0.11 -1.08 10.04 22.29 0.22 -0.86 16 22 C -0.09 -1.24 10.04 22.25 0.22 -1.02 16 23 C -0.14 -2.82 8.76 22.40 0.20 -2.62 16 24 H 0.00 -0.12 8.01 -2.39 -0.02 -0.14 16 25 H 0.06 2.76 6.24 -2.38 -0.01 2.75 16 26 H 0.05 1.80 7.82 -2.39 -0.02 1.78 16 27 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 28 H 0.13 3.83 4.19 -2.39 -0.01 3.82 16 29 H 0.10 4.35 7.73 -2.39 -0.02 4.33 16 30 H 0.29 3.19 8.06 -2.91 -0.02 3.16 16 31 H 0.15 1.70 7.79 -2.91 -0.02 1.67 16 32 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 33 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 34 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 35 H 0.12 2.58 5.55 -2.91 -0.02 2.56 16 Total: -1.00 -85.48 312.09 3.42 -82.05 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.12 Total: 4.33 kcal Atomic # 6 Polarization: 27.58 SS G_CDS: 8.39 Total: 35.97 kcal Atomic # 7 Polarization: -121.03 SS G_CDS: -6.47 Total: -127.50 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.04 Total: 47.62 kcal Atomic # 16 Polarization: -40.83 SS G_CDS: -1.64 Total: -42.48 kcal Total: -85.48 3.42 -82.05 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725772491.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 244.532 kcal (2) G-P(sol) polarization free energy of solvation -85.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds