Wall clock time and date at job start Tue Mar 31 2020 08:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48505 * 109.47059 * 270.00359 * 3 2 1 5 5 H 1.48502 * 109.47219 * 30.00374 * 3 2 1 6 6 H 1.48500 * 109.47127 * 150.00360 * 3 2 1 7 7 C 1.38759 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00146 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99322 * 359.97438 * 7 2 1 10 10 C 1.34310 * 116.99413 * 180.02562 * 9 7 2 11 11 O 1.21219 * 120.00419 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00158 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47781 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47250 * 179.97438 * 13 12 10 15 15 C 1.50708 * 109.46944 * 179.97438 * 14 13 12 16 16 C 1.38718 * 119.78103 * 270.03927 * 15 14 13 17 17 C 1.37664 * 120.50218 * 180.02562 * 16 15 14 18 18 C 1.39704 * 119.77542 * 359.93906 * 17 16 15 19 19 N 1.35915 * 133.44548 * 180.02562 * 18 17 16 20 20 C 1.30758 * 109.62053 * 179.97438 * 19 18 17 21 21 O 1.35283 * 125.02849 * 179.97438 * 20 19 18 22 22 N 1.36382 * 109.94038 * 359.97438 * 20 19 18 23 23 H 0.96997 * 126.36926 * 180.02562 * 22 20 19 24 24 C 1.38454 * 107.26492 * 359.97438 * 22 20 19 25 25 C 1.37929 * 119.78092 * 90.00240 * 15 14 13 26 26 H 0.96998 * 119.99851 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47057 * 59.99786 * 12 10 9 28 28 H 1.09004 * 109.46969 * 300.00273 * 12 10 9 29 29 H 1.08997 * 109.46731 * 59.99612 * 13 12 10 30 30 H 1.09004 * 109.46868 * 300.00060 * 13 12 10 31 31 H 1.08997 * 109.47545 * 60.00142 * 14 13 12 32 32 H 1.09000 * 109.47503 * 299.99391 * 14 13 12 33 33 H 1.08003 * 119.74876 * 359.97283 * 16 15 14 34 34 H 1.08003 * 120.11652 * 179.91496 * 17 16 15 35 35 H 0.96692 * 114.00096 * 90.02301 * 21 20 19 36 36 H 1.08007 * 120.08049 * 0.24676 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4459 2.6527 0.7001 6 1 3.5460 1.4401 0.7000 7 6 2.0082 -1.2017 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0001 12 6 1.3809 -4.8393 -0.0011 13 6 2.4346 -5.9486 -0.0004 14 6 1.7400 -7.3117 -0.0003 15 6 2.7779 -8.4044 -0.0002 16 6 3.2531 -8.9035 -1.2041 17 6 4.2008 -9.9019 -1.2213 18 6 4.6889 -10.4159 -0.0175 19 7 5.6012 -11.3762 0.2872 20 6 5.7061 -11.4860 1.5859 21 8 6.5257 -12.3493 2.2286 22 7 4.8669 -10.6012 2.1967 23 1 4.7543 -10.4814 3.1527 24 6 4.2066 -9.9051 1.1987 25 6 3.2497 -8.9011 1.1970 26 1 -0.4850 0.8400 0.0004 27 1 0.7585 -4.9295 -0.8914 28 1 0.7578 -4.9299 0.8886 29 1 3.0567 -5.8581 0.8901 30 1 3.0581 -5.8581 -0.8899 31 1 1.1176 -7.4025 -0.8905 32 1 1.1169 -7.4021 0.8895 33 1 2.8761 -8.5063 -2.1350 34 1 4.5654 -10.2868 -2.1622 35 1 7.4046 -11.9922 2.4153 36 1 2.8732 -8.5107 2.1310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000730374622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:34 Heat of formation + Delta-G solvation = -61.017699 kcal Electronic energy + Delta-G solvation = -21220.283168 eV Core-core repulsion = 17670.533754 eV Total energy + Delta-G solvation = -3549.749414 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.35559 -39.04519 -38.64697 -37.22361 -35.42367 -34.05212 -33.25741 -32.11002 -30.36384 -29.76290 -26.80882 -25.10165 -23.26257 -22.72747 -21.87711 -21.05696 -19.63095 -19.34608 -17.68985 -17.61341 -17.40956 -16.47518 -16.14192 -15.60093 -14.90988 -14.68301 -14.42489 -14.37730 -14.17124 -14.02911 -13.61279 -13.05507 -12.66096 -12.38126 -12.05701 -11.82335 -11.62598 -11.60012 -11.24294 -11.11753 -11.03532 -10.82534 -10.47255 -10.41781 -10.31552 -10.25352 -9.77026 -8.97124 -8.57310 -8.55345 -8.19887 -6.38573 -4.06255 0.65387 1.29977 2.05445 2.41267 3.12926 3.19956 3.26017 3.45115 3.58855 3.63734 3.97763 4.25697 4.54421 4.78000 4.80078 4.95196 5.12279 5.13797 5.17061 5.31397 5.39283 5.54997 5.62748 5.75041 5.84133 5.86857 6.02892 6.08777 6.22806 6.33782 6.40927 6.56454 6.57973 6.66759 6.87113 7.26110 7.42662 7.48177 7.98937 8.76468 9.10714 9.90468 10.79741 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.034905 B = 0.002414 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.982252 B =11594.593075 C =11891.170664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.041 3.959 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.382 4.382 8 H 0.094 0.906 9 O -0.218 6.218 10 C 0.396 3.604 11 O -0.559 6.559 12 C -0.104 4.104 13 C -0.098 4.098 14 C -0.081 4.081 15 C -0.049 4.049 16 C -0.116 4.116 17 C -0.063 4.063 18 C 0.049 3.951 19 N -0.486 5.486 20 C 0.445 3.555 21 O -0.445 6.445 22 N -0.603 5.603 23 H 0.422 0.578 24 C 0.061 3.939 25 C -0.110 4.110 26 H 0.269 0.731 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.409 0.591 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -20.902 3.540 22.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.458 4.458 8 H 0.112 0.888 9 O -0.125 6.125 10 C 0.243 3.757 11 O -0.456 6.456 12 C -0.142 4.142 13 C -0.135 4.135 14 C -0.118 4.118 15 C -0.051 4.051 16 C -0.136 4.136 17 C -0.083 4.083 18 C -0.069 4.069 19 N -0.217 5.217 20 C 0.141 3.859 21 O -0.246 6.246 22 N -0.228 5.228 23 H 0.262 0.738 24 C -0.047 4.047 25 C -0.131 4.131 26 H 0.078 0.922 27 H 0.109 0.891 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.094 0.906 33 H 0.152 0.848 34 H 0.150 0.850 35 H 0.268 0.732 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.319 -21.657 2.909 22.747 hybrid contribution 0.502 1.474 1.350 2.061 sum 6.821 -20.183 4.259 21.726 Atomic orbital electron populations 1.69988 1.05977 1.27576 1.46922 1.25322 0.95799 0.98838 0.96328 0.85698 0.79030 0.79889 0.78714 1.19903 1.20370 1.19172 1.21205 0.92322 0.80014 1.52256 0.88804 1.83885 1.39454 1.13467 1.75712 1.23280 0.86754 0.87415 0.78295 1.90553 1.15875 1.88223 1.50965 1.21110 0.98754 0.89894 1.04421 1.21326 0.97391 0.90805 1.03994 1.20682 0.95612 0.92036 1.03500 1.19684 0.97170 0.96296 0.91911 1.20904 0.97609 0.96952 0.98124 1.20259 0.96300 0.96219 0.95498 1.18788 0.98045 0.96575 0.93448 1.70645 1.21131 1.20258 1.09690 1.20312 0.91751 0.88228 0.85649 1.84823 1.27682 1.35811 1.76298 1.43387 1.37242 1.32507 1.09639 0.73846 1.18612 0.99602 0.98202 0.88325 1.19815 0.97598 0.96728 0.98955 0.92153 0.89066 0.89200 0.91198 0.90915 0.90230 0.90620 0.84751 0.85019 0.73238 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.54 13.67 55.48 0.76 -24.78 16 2 C 0.04 1.16 5.49 -17.53 -0.10 1.06 16 3 Si 0.94 21.43 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 7 C -0.38 -11.38 9.65 30.92 0.30 -11.08 16 8 H 0.09 2.82 6.86 -52.49 -0.36 2.46 16 9 O -0.22 -6.25 9.75 -20.71 -0.20 -6.45 16 10 C 0.40 9.62 7.91 36.01 0.28 9.90 16 11 O -0.56 -14.90 15.22 -19.06 -0.29 -15.19 16 12 C -0.10 -1.74 5.81 -27.88 -0.16 -1.91 16 13 C -0.10 -1.39 4.49 -26.74 -0.12 -1.51 16 14 C -0.08 -0.85 5.33 -27.88 -0.15 -1.00 16 15 C -0.05 -0.53 5.14 -104.55 -0.54 -1.07 16 16 C -0.12 -1.22 9.66 -39.61 -0.38 -1.60 16 17 C -0.06 -0.72 10.10 -39.24 -0.40 -1.11 16 18 C 0.05 0.63 7.22 -84.68 -0.61 0.01 16 19 N -0.49 -6.36 11.31 -12.24 -0.14 -6.50 16 20 C 0.45 4.55 9.39 -88.92 -0.84 3.72 16 21 O -0.44 -3.17 13.63 -17.54 -0.24 -3.40 16 22 N -0.60 -5.40 6.26 -11.90 -0.07 -5.48 16 23 H 0.42 2.37 8.96 -40.82 -0.37 2.00 16 24 C 0.06 0.70 7.30 -83.87 -0.61 0.08 16 25 C -0.11 -1.17 9.70 -39.53 -0.38 -1.56 16 26 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 27 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 28 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 29 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 30 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 32 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 33 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 34 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 35 H 0.41 0.71 9.06 45.56 0.41 1.12 16 36 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 323.89 15.07 4.88 4.88 Total: -1.00 -37.63 323.89 -7.27 -44.90 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -3.24 Total: 1.68 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: -3.70 Total: -6.05 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.55 Total: -36.76 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.73 Total: -25.05 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -37.63 -7.27 -44.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730374622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.116 kcal (2) G-P(sol) polarization free energy of solvation -37.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds