Wall clock time and date at job start Tue Mar 31 2020 08:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31434 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48505 * 109.47059 * 270.00359 * 3 2 1 5 5 H 1.48502 * 109.47219 * 30.00374 * 3 2 1 6 6 H 1.48500 * 109.47127 * 150.00360 * 3 2 1 7 7 C 1.38759 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00146 * 179.97438 * 7 2 1 9 9 O 1.34924 * 119.99322 * 359.97438 * 7 2 1 10 10 C 1.34310 * 116.99413 * 180.02562 * 9 7 2 11 11 O 1.21219 * 120.00419 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00158 * 180.02562 * 10 9 7 13 13 C 1.52998 * 109.47781 * 180.02562 * 12 10 9 14 14 C 1.52992 * 109.47250 * 179.97438 * 13 12 10 15 15 C 1.50708 * 109.46944 * 179.97438 * 14 13 12 16 16 C 1.38718 * 119.78103 * 270.03927 * 15 14 13 17 17 C 1.37664 * 120.50218 * 180.02562 * 16 15 14 18 18 C 1.39704 * 119.77542 * 359.93906 * 17 16 15 19 19 N 1.35915 * 133.44548 * 180.02562 * 18 17 16 20 20 C 1.30758 * 109.62053 * 179.97438 * 19 18 17 21 21 O 1.35283 * 125.02849 * 179.97438 * 20 19 18 22 22 N 1.36382 * 109.94038 * 359.97438 * 20 19 18 23 23 H 0.96997 * 126.36926 * 180.02562 * 22 20 19 24 24 C 1.38454 * 107.26492 * 359.97438 * 22 20 19 25 25 C 1.37929 * 119.78092 * 90.00240 * 15 14 13 26 26 H 0.96998 * 119.99851 * 359.97438 * 1 2 3 27 27 H 1.09001 * 109.47057 * 59.99786 * 12 10 9 28 28 H 1.09004 * 109.46969 * 300.00273 * 12 10 9 29 29 H 1.08997 * 109.46731 * 59.99612 * 13 12 10 30 30 H 1.09004 * 109.46868 * 300.00060 * 13 12 10 31 31 H 1.08997 * 109.47545 * 60.00142 * 14 13 12 32 32 H 1.09000 * 109.47503 * 299.99391 * 14 13 12 33 33 H 1.08003 * 119.74876 * 359.97283 * 16 15 14 34 34 H 1.08003 * 120.11652 * 179.91496 * 17 16 15 35 35 H 0.96692 * 114.00096 * 90.02301 * 21 20 19 36 36 H 1.08007 * 120.08049 * 0.24676 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3143 0.0000 0.0000 3 14 2.2484 1.6177 0.0000 4 1 2.4958 2.0464 -1.4001 5 1 1.4459 2.6527 0.7001 6 1 3.5460 1.4401 0.7000 7 6 2.0082 -1.2017 -0.0005 8 1 3.0881 -1.2016 -0.0010 9 8 1.3335 -2.3701 -0.0005 10 6 2.0650 -3.4965 -0.0005 11 8 3.2756 -3.4331 -0.0001 12 6 1.3809 -4.8393 -0.0011 13 6 2.4346 -5.9486 -0.0004 14 6 1.7400 -7.3117 -0.0003 15 6 2.7779 -8.4044 -0.0002 16 6 3.2531 -8.9035 -1.2041 17 6 4.2008 -9.9019 -1.2213 18 6 4.6889 -10.4159 -0.0175 19 7 5.6012 -11.3762 0.2872 20 6 5.7061 -11.4860 1.5859 21 8 6.5257 -12.3493 2.2286 22 7 4.8669 -10.6012 2.1967 23 1 4.7543 -10.4814 3.1527 24 6 4.2066 -9.9051 1.1987 25 6 3.2497 -8.9011 1.1970 26 1 -0.4850 0.8400 0.0004 27 1 0.7585 -4.9295 -0.8914 28 1 0.7578 -4.9299 0.8886 29 1 3.0567 -5.8581 0.8901 30 1 3.0581 -5.8581 -0.8899 31 1 1.1176 -7.4025 -0.8905 32 1 1.1169 -7.4021 0.8895 33 1 2.8761 -8.5063 -2.1350 34 1 4.5654 -10.2868 -2.1622 35 1 7.4046 -11.9922 2.4153 36 1 2.8732 -8.5107 2.1310 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000730374622.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:16:33 Heat of formation + Delta-G solvation = -89.949360 kcal Electronic energy + Delta-G solvation = -21221.537739 eV Core-core repulsion = 17670.533754 eV Total energy + Delta-G solvation = -3551.003985 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.13555 -40.97234 -39.44915 -38.00330 -37.30495 -35.21229 -34.28142 -34.14521 -31.36000 -30.65029 -28.18105 -26.87405 -24.18087 -23.78332 -22.68897 -22.04224 -21.28648 -20.03388 -19.84054 -18.53349 -18.34726 -18.00895 -17.08218 -16.98134 -16.46590 -16.20022 -16.02153 -15.28641 -15.11186 -14.90932 -14.86752 -14.33545 -13.97422 -13.63054 -13.27260 -13.22255 -12.86254 -12.75909 -12.52612 -12.28527 -12.21969 -12.14917 -12.08806 -11.90714 -11.70079 -11.53644 -11.08131 -10.96873 -10.67865 -9.36437 -9.03305 -8.52201 -6.31714 -0.12940 0.48437 1.33277 1.34463 1.35682 1.51777 1.63740 1.70437 2.14462 2.71735 2.80700 2.93557 2.99143 3.53373 3.81825 4.07106 4.12375 4.24552 4.27749 4.39751 4.40917 4.45873 4.68788 4.73293 4.78835 4.96086 5.03697 5.09380 5.19259 5.24261 5.34629 5.43496 5.48276 5.71200 5.86306 5.88925 5.91811 6.67560 6.69852 6.73717 6.93631 7.82176 8.68641 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.034905 B = 0.002414 C = 0.002354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.982252 B =11594.593075 C =11891.170664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C -0.005 4.005 3 Si 1.015 2.985 4 H -0.260 1.260 5 H -0.260 1.260 6 H -0.265 1.265 7 C -0.421 4.421 8 H 0.078 0.922 9 O -0.249 6.249 10 C 0.391 3.609 11 O -0.588 6.588 12 C -0.094 4.094 13 C -0.089 4.089 14 C -0.068 4.068 15 C -0.061 4.061 16 C -0.115 4.115 17 C -0.079 4.079 18 C 0.024 3.976 19 N -0.528 5.528 20 C 0.455 3.545 21 O -0.444 6.444 22 N -0.590 5.590 23 H 0.438 0.562 24 C 0.048 3.952 25 C -0.110 4.110 26 H 0.278 0.722 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.152 0.848 34 H 0.139 0.861 35 H 0.433 0.567 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -21.070 4.133 22.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.205 4.205 3 Si 0.834 3.166 4 H -0.185 1.185 5 H -0.184 1.184 6 H -0.190 1.190 7 C -0.497 4.497 8 H 0.096 0.904 9 O -0.158 6.158 10 C 0.239 3.761 11 O -0.486 6.486 12 C -0.131 4.131 13 C -0.126 4.126 14 C -0.105 4.105 15 C -0.063 4.063 16 C -0.135 4.135 17 C -0.099 4.099 18 C -0.093 4.093 19 N -0.261 5.261 20 C 0.150 3.850 21 O -0.249 6.249 22 N -0.217 5.217 23 H 0.280 0.720 24 C -0.061 4.061 25 C -0.131 4.131 26 H 0.088 0.912 27 H 0.134 0.866 28 H 0.133 0.867 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.170 0.830 34 H 0.157 0.843 35 H 0.296 0.704 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.999 -21.848 3.535 22.931 hybrid contribution 0.684 1.374 1.208 1.953 sum 6.683 -20.474 4.743 22.053 Atomic orbital electron populations 1.70063 1.07554 1.29284 1.47196 1.26497 0.96885 1.02296 0.94839 0.84662 0.77656 0.74776 0.79498 1.18504 1.18362 1.18977 1.21366 0.92015 0.81493 1.54826 0.90395 1.83912 1.40478 1.14347 1.77039 1.24839 0.86819 0.88721 0.75676 1.90522 1.17559 1.88813 1.51744 1.21325 0.99392 0.85714 1.06709 1.21251 0.96629 0.92198 1.02560 1.20585 0.95375 0.89079 1.05474 1.19799 0.97625 0.96706 0.92124 1.21146 0.97038 0.96399 0.98943 1.20468 0.96926 0.96833 0.95680 1.19148 0.98522 0.97077 0.94566 1.70595 1.22513 1.21600 1.11384 1.20394 0.91565 0.87653 0.85394 1.84792 1.28958 1.35441 1.75716 1.43301 1.36472 1.31700 1.10200 0.72014 1.18762 1.00094 0.98734 0.88510 1.20066 0.97056 0.96227 0.99772 0.91244 0.86583 0.86698 0.92715 0.92464 0.88296 0.88696 0.83009 0.84285 0.70410 0.83785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.36 13.67 21.63 0.30 -53.06 16 2 C -0.01 -0.30 5.49 84.88 0.47 0.17 16 3 Si 1.02 43.60 29.55 68.60 2.03 45.63 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.88 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 7 C -0.42 -25.72 9.65 67.94 0.66 -25.07 16 8 H 0.08 4.86 6.86 -2.91 -0.02 4.84 16 9 O -0.25 -14.59 9.75 14.84 0.14 -14.45 16 10 C 0.39 19.15 7.91 71.24 0.56 19.72 16 11 O -0.59 -32.06 15.22 20.75 0.32 -31.75 16 12 C -0.09 -2.99 5.81 29.85 0.17 -2.82 16 13 C -0.09 -2.39 4.49 30.59 0.14 -2.25 16 14 C -0.07 -1.23 5.33 29.85 0.16 -1.07 16 15 C -0.06 -1.21 5.14 -19.82 -0.10 -1.31 16 16 C -0.12 -2.29 9.66 22.25 0.21 -2.08 16 17 C -0.08 -1.79 10.10 22.49 0.23 -1.56 16 18 C 0.02 0.61 7.22 39.40 0.28 0.89 16 19 N -0.53 -13.79 11.31 -306.46 -3.47 -17.26 16 20 C 0.46 8.89 9.39 179.76 1.69 10.58 16 21 O -0.44 -5.64 13.63 -85.68 -1.17 -6.81 16 22 N -0.59 -9.84 6.26 -302.47 -1.89 -11.73 16 23 H 0.44 4.15 8.96 -92.71 -0.83 3.32 16 24 C 0.05 1.05 7.30 38.74 0.28 1.33 16 25 C -0.11 -2.18 9.70 22.31 0.22 -1.96 16 26 H 0.28 14.87 8.31 -92.71 -0.77 14.10 16 27 H 0.12 3.18 8.14 -2.39 -0.02 3.17 16 28 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 29 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 30 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 31 H 0.10 1.44 8.08 -2.39 -0.02 1.42 16 32 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 33 H 0.15 2.36 8.06 -2.91 -0.02 2.33 16 34 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.43 0.70 9.06 -74.06 -0.67 0.03 16 36 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 Total: -1.00 -83.76 323.89 0.86 -82.89 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -0.36 Total: 11.96 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: 4.97 Total: -5.42 kcal Atomic # 7 Polarization: -76.99 SS G_CDS: -5.06 Total: -82.05 kcal Atomic # 8 Polarization: -52.29 SS G_CDS: -0.71 Total: -53.00 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -83.76 0.86 -82.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000730374622.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.058 kcal (2) G-P(sol) polarization free energy of solvation -83.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds