Wall clock time and date at job start Tue Mar 31 2020 08:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99904 * 2 1 4 4 H 1.48508 * 109.47276 * 273.35330 * 3 2 1 5 5 H 1.48505 * 109.47186 * 33.35102 * 3 2 1 6 6 H 1.48501 * 109.47071 * 153.35241 * 3 2 1 7 7 C 1.37874 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99986 * 353.92755 * 7 2 1 9 9 C 1.50700 * 119.99835 * 174.21241 * 7 2 1 10 10 C 1.53006 * 115.54899 * 294.52870 * 9 7 2 11 11 O 1.42904 * 109.46878 * 294.97165 * 10 9 7 12 12 C 1.34921 * 116.99746 * 183.62423 * 11 10 9 13 13 O 1.21633 * 119.99721 * 5.10497 * 12 11 10 14 14 C 1.46138 * 119.99873 * 185.10345 * 12 11 10 15 15 C 1.35005 * 120.00083 * 185.25736 * 14 12 11 16 16 C 1.47043 * 120.00280 * 179.97438 * 15 14 12 17 17 C 1.39923 * 120.18793 * 359.73099 * 16 15 14 18 18 C 1.37800 * 119.84241 * 179.69614 * 17 16 15 19 19 C 1.38495 * 120.24791 * 0.59929 * 18 17 16 20 20 C 1.38271 * 120.38902 * 359.67840 * 19 18 17 21 21 C 1.38231 * 120.14247 * 0.02562 * 20 19 18 22 22 F 1.35096 * 120.11905 * 179.97438 * 21 20 19 23 23 C 1.53002 * 117.50233 * 148.86137 * 9 7 2 24 24 C 1.53000 * 117.50452 * 80.20218 * 9 7 2 25 25 H 0.96998 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47099 * 54.97301 * 10 9 7 27 27 H 1.09000 * 109.47138 * 174.97481 * 10 9 7 28 28 H 1.08005 * 119.99996 * 5.25958 * 14 12 11 29 29 H 1.08001 * 119.99771 * 0.02562 * 15 14 12 30 30 H 1.07995 * 120.07780 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.87795 * 180.27825 * 18 17 16 32 32 H 1.08000 * 119.80522 * 179.69559 * 19 18 17 33 33 H 1.07996 * 119.92831 * 180.02562 * 20 19 18 34 34 H 1.09000 * 117.49519 * 359.97438 * 23 9 7 35 35 H 1.08993 * 117.50150 * 145.01374 * 23 9 7 36 36 H 1.09001 * 117.50010 * 214.98244 * 24 9 7 37 37 H 1.09005 * 117.49444 * 359.97400 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4257 2.0874 -1.3977 5 1 1.4838 2.6312 0.7697 6 1 3.5803 1.4207 0.6279 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1268 0.0980 9 6 3.5058 -1.1973 -0.1321 10 6 4.0522 -0.6891 -1.4679 11 8 3.6495 -1.5743 -2.5150 12 6 4.1141 -1.3092 -3.7536 13 8 4.9143 -0.4091 -3.9232 14 6 3.6559 -2.1037 -4.8914 15 6 4.1986 -1.9099 -6.1123 16 6 3.7379 -2.7097 -7.2570 17 6 2.7413 -3.6766 -7.0843 18 6 2.3106 -4.4177 -8.1632 19 6 2.8690 -4.2175 -9.4147 20 6 3.8585 -3.2688 -9.5955 21 6 4.2985 -2.5121 -8.5256 22 9 5.2656 -1.5856 -8.7027 23 6 4.2735 -2.3238 0.5624 24 6 4.3259 -0.9013 1.1251 25 1 -0.4850 0.8400 0.0004 26 1 3.6602 0.3087 -1.6648 27 1 5.1406 -0.6497 -1.4239 28 1 2.8831 -2.8459 -4.7555 29 1 4.9716 -1.1681 -6.2480 30 1 2.3076 -3.8385 -6.1086 31 1 1.5382 -5.1610 -8.0314 32 1 2.5294 -4.8058 -10.2543 33 1 4.2885 -3.1186 -10.5747 34 1 3.6927 -3.0624 1.1149 35 1 5.1679 -2.7027 0.0680 36 1 5.2549 -0.3448 1.0006 37 1 3.7796 -0.7038 2.0474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:13 Heat of formation + Delta-G solvation = -61.405760 kcal Electronic energy + Delta-G solvation = -21685.728653 eV Core-core repulsion = 18116.042450 eV Total energy + Delta-G solvation = -3569.686203 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.18865 -40.02178 -39.26314 -37.20650 -35.56286 -34.35569 -32.14618 -30.93087 -30.13164 -27.48103 -25.52574 -24.52218 -23.05488 -21.86708 -21.48864 -19.42622 -19.08083 -18.26966 -17.36813 -16.95252 -16.39443 -16.02679 -15.94755 -15.86340 -15.38639 -14.69922 -14.55743 -14.09023 -13.82740 -13.45445 -13.17038 -12.88137 -12.81439 -12.57643 -12.40976 -12.11408 -11.61980 -11.41200 -11.08037 -10.92811 -10.69237 -10.63067 -10.41180 -10.12276 -9.93797 -9.52832 -9.22549 -9.07058 -8.68778 -8.53954 -8.50439 -6.13490 -4.13954 0.15439 0.85317 1.65530 3.08461 3.18093 3.26310 3.36654 3.41319 3.45544 3.85738 4.33412 4.38463 4.40895 4.55965 4.80896 4.89065 4.91387 5.06635 5.18154 5.34242 5.49091 5.56953 5.65724 5.70003 5.81160 5.87948 5.94696 6.03178 6.08623 6.15962 6.26051 6.36859 6.45930 6.49855 6.65323 6.85135 7.06864 7.12935 7.68779 8.24390 8.48124 8.90084 9.49154 10.98321 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.003400 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.963156 B = 8233.135501 C = 8411.113858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.080 3.920 3 Si 0.859 3.141 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.248 1.248 7 C -0.478 4.478 8 H 0.080 0.920 9 C -0.008 4.008 10 C 0.104 3.896 11 O -0.315 6.315 12 C 0.486 3.514 13 O -0.523 6.523 14 C -0.161 4.161 15 C -0.035 4.035 16 C -0.100 4.100 17 C -0.073 4.073 18 C -0.130 4.130 19 C -0.083 4.083 20 C -0.158 4.158 21 C 0.118 3.882 22 F -0.132 7.132 23 C -0.175 4.175 24 C -0.182 4.182 25 H 0.265 0.735 26 H 0.059 0.941 27 H 0.049 0.951 28 H 0.145 0.855 29 H 0.140 0.860 30 H 0.144 0.856 31 H 0.135 0.865 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.088 0.912 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.679 -8.418 -17.298 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.123 4.123 3 Si 0.686 3.314 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.172 1.172 7 C -0.515 4.515 8 H 0.098 0.902 9 C -0.009 4.009 10 C 0.030 3.970 11 O -0.230 6.230 12 C 0.332 3.668 13 O -0.415 6.415 14 C -0.179 4.179 15 C -0.053 4.053 16 C -0.101 4.101 17 C -0.091 4.091 18 C -0.148 4.148 19 C -0.101 4.101 20 C -0.176 4.176 21 C 0.099 3.901 22 F -0.110 7.110 23 C -0.212 4.212 24 C -0.220 4.220 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.161 0.839 31 H 0.153 0.847 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.778 -8.002 -17.279 20.212 hybrid contribution 0.595 1.340 -0.044 1.467 sum 7.373 -6.662 -17.324 19.971 Atomic orbital electron populations 1.69888 1.06245 1.27099 1.49857 1.24914 0.94567 0.98853 0.93981 0.87138 0.81720 0.83997 0.78504 1.20517 1.21397 1.17206 1.20229 0.86420 0.94709 1.50161 0.90178 1.19331 0.95173 0.99712 0.86646 1.22599 0.96955 0.91911 0.85580 1.86271 1.67471 1.53274 1.15970 1.21240 0.78747 0.82314 0.84502 1.90832 1.32960 1.31533 1.86194 1.22329 1.03077 1.01937 0.90579 1.22194 0.96967 0.95629 0.90513 1.18998 0.99555 0.99573 0.91988 1.21492 0.94222 0.93107 1.00250 1.21212 1.00748 1.00400 0.92446 1.21180 0.94735 0.96392 0.97795 1.21103 1.00067 0.97973 0.98491 1.17880 0.88855 0.89663 0.93718 1.91518 1.60264 1.63367 1.95898 1.22787 1.01500 0.91810 1.05148 1.23082 1.00976 0.98398 0.99497 0.92501 0.92340 0.93315 0.83699 0.84185 0.83860 0.84718 0.84782 0.84419 0.89304 0.90826 0.91070 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.96 55.43 0.77 -26.21 16 2 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 3 Si 0.86 21.44 24.98 -169.99 -4.25 17.19 16 4 H -0.28 -7.04 7.02 56.52 0.40 -6.64 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.25 -5.78 5.72 56.52 0.32 -5.45 16 7 C -0.48 -13.30 9.32 -34.44 -0.32 -13.62 16 8 H 0.08 2.42 8.06 -52.48 -0.42 1.99 16 9 C -0.01 -0.18 1.06 -155.66 -0.16 -0.34 16 10 C 0.10 2.37 4.91 37.16 0.18 2.55 16 11 O -0.32 -6.93 10.05 -41.10 -0.41 -7.34 16 12 C 0.49 9.46 7.86 33.90 0.27 9.73 16 13 O -0.52 -11.20 15.95 -19.37 -0.31 -11.51 16 14 C -0.16 -2.38 9.53 -37.56 -0.36 -2.73 16 15 C -0.03 -0.46 9.26 -37.16 -0.34 -0.80 16 16 C -0.10 -1.13 5.87 -105.00 -0.62 -1.75 16 17 C -0.07 -0.68 9.41 -39.11 -0.37 -1.05 16 18 C -0.13 -0.96 10.02 -39.65 -0.40 -1.36 16 19 C -0.08 -0.57 10.04 -39.47 -0.40 -0.96 16 20 C -0.16 -1.29 10.01 -39.57 -0.40 -1.68 16 21 C 0.12 1.27 7.30 -38.89 -0.28 0.98 16 22 F -0.13 -1.58 16.62 2.25 0.04 -1.54 16 23 C -0.18 -3.55 9.96 -26.70 -0.27 -3.82 16 24 C -0.18 -3.80 8.02 -26.70 -0.21 -4.02 16 25 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.06 1.43 5.07 -51.93 -0.26 1.16 16 27 H 0.05 1.02 7.94 -51.93 -0.41 0.61 16 28 H 0.15 1.80 6.08 -52.48 -0.32 1.48 16 29 H 0.14 1.97 7.21 -52.49 -0.38 1.59 16 30 H 0.14 1.18 6.17 -52.49 -0.32 0.86 16 31 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 32 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 34 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 35 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 36 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.09 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 325.01 15.07 4.90 4.90 Total: -1.00 -32.28 325.01 -7.33 -39.61 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -4.30 Total: 1.59 kcal Atomic # 6 Polarization: -12.93 SS G_CDS: -3.77 Total: -16.70 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.77 Total: -26.21 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -0.72 Total: -18.85 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.25 Total: 17.19 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.28 -7.33 -39.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.792 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds