Wall clock time and date at job start Tue Mar 31 2020 08:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86793 * 119.99904 * 2 1 4 4 H 1.48508 * 109.47276 * 273.35330 * 3 2 1 5 5 H 1.48505 * 109.47186 * 33.35102 * 3 2 1 6 6 H 1.48501 * 109.47071 * 153.35241 * 3 2 1 7 7 C 1.37874 * 119.99952 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99986 * 353.92755 * 7 2 1 9 9 C 1.50700 * 119.99835 * 174.21241 * 7 2 1 10 10 C 1.53006 * 115.54899 * 294.52870 * 9 7 2 11 11 O 1.42904 * 109.46878 * 294.97165 * 10 9 7 12 12 C 1.34921 * 116.99746 * 183.62423 * 11 10 9 13 13 O 1.21633 * 119.99721 * 5.10497 * 12 11 10 14 14 C 1.46138 * 119.99873 * 185.10345 * 12 11 10 15 15 C 1.35005 * 120.00083 * 185.25736 * 14 12 11 16 16 C 1.47043 * 120.00280 * 179.97438 * 15 14 12 17 17 C 1.39923 * 120.18793 * 359.73099 * 16 15 14 18 18 C 1.37800 * 119.84241 * 179.69614 * 17 16 15 19 19 C 1.38495 * 120.24791 * 0.59929 * 18 17 16 20 20 C 1.38271 * 120.38902 * 359.67840 * 19 18 17 21 21 C 1.38231 * 120.14247 * 0.02562 * 20 19 18 22 22 F 1.35096 * 120.11905 * 179.97438 * 21 20 19 23 23 C 1.53002 * 117.50233 * 148.86137 * 9 7 2 24 24 C 1.53000 * 117.50452 * 80.20218 * 9 7 2 25 25 H 0.96998 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.47099 * 54.97301 * 10 9 7 27 27 H 1.09000 * 109.47138 * 174.97481 * 10 9 7 28 28 H 1.08005 * 119.99996 * 5.25958 * 14 12 11 29 29 H 1.08001 * 119.99771 * 0.02562 * 15 14 12 30 30 H 1.07995 * 120.07780 * 359.97438 * 17 16 15 31 31 H 1.08001 * 119.87795 * 180.27825 * 18 17 16 32 32 H 1.08000 * 119.80522 * 179.69559 * 19 18 17 33 33 H 1.07996 * 119.92831 * 180.02562 * 20 19 18 34 34 H 1.09000 * 117.49519 * 359.97438 * 23 9 7 35 35 H 1.08993 * 117.50150 * 145.01374 * 23 9 7 36 36 H 1.09001 * 117.50010 * 214.98244 * 24 9 7 37 37 H 1.09005 * 117.49444 * 359.97400 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4257 2.0874 -1.3977 5 1 1.4838 2.6312 0.7697 6 1 3.5803 1.4207 0.6279 7 6 2.0045 -1.1940 -0.0005 8 1 1.4691 -2.1268 0.0980 9 6 3.5058 -1.1973 -0.1321 10 6 4.0522 -0.6891 -1.4679 11 8 3.6495 -1.5743 -2.5150 12 6 4.1141 -1.3092 -3.7536 13 8 4.9143 -0.4091 -3.9232 14 6 3.6559 -2.1037 -4.8914 15 6 4.1986 -1.9099 -6.1123 16 6 3.7379 -2.7097 -7.2570 17 6 2.7413 -3.6766 -7.0843 18 6 2.3106 -4.4177 -8.1632 19 6 2.8690 -4.2175 -9.4147 20 6 3.8585 -3.2688 -9.5955 21 6 4.2985 -2.5121 -8.5256 22 9 5.2656 -1.5856 -8.7027 23 6 4.2735 -2.3238 0.5624 24 6 4.3259 -0.9013 1.1251 25 1 -0.4850 0.8400 0.0004 26 1 3.6602 0.3087 -1.6648 27 1 5.1406 -0.6497 -1.4239 28 1 2.8831 -2.8459 -4.7555 29 1 4.9716 -1.1681 -6.2480 30 1 2.3076 -3.8385 -6.1086 31 1 1.5382 -5.1610 -8.0314 32 1 2.5294 -4.8058 -10.2543 33 1 4.2885 -3.1186 -10.5747 34 1 3.6927 -3.0624 1.1149 35 1 5.1679 -2.7027 0.0680 36 1 5.2549 -0.3448 1.0006 37 1 3.7796 -0.7038 2.0474 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277484.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:10 Heat of formation + Delta-G solvation = -79.154803 kcal Electronic energy + Delta-G solvation = -21686.498309 eV Core-core repulsion = 18116.042450 eV Total energy + Delta-G solvation = -3570.455859 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 3.51 seconds Orbital eigenvalues (eV) -50.03810 -41.56549 -40.02305 -38.88819 -37.19567 -35.37817 -34.30333 -31.59941 -31.09194 -29.13950 -27.46082 -25.67211 -23.87893 -23.29711 -22.71822 -21.12869 -20.49436 -19.34163 -18.76108 -18.36289 -17.70129 -17.59238 -16.80449 -16.79752 -16.73606 -16.54139 -15.56241 -15.23445 -14.99730 -14.82687 -14.67204 -14.23440 -14.13268 -14.01487 -13.58829 -13.36586 -13.03705 -12.89030 -12.50905 -12.30776 -12.14602 -12.08093 -11.82275 -11.69584 -11.60468 -11.42211 -11.00758 -10.64705 -10.41503 -9.90962 -9.41765 -8.32978 -6.36576 -0.79796 0.18950 0.65434 1.27319 1.32795 1.43297 1.71198 1.86579 2.31070 2.66729 2.94403 3.12027 3.22499 3.47929 3.63765 3.86253 3.88969 3.96787 4.11705 4.12845 4.24556 4.30709 4.31769 4.39457 4.58784 4.76323 4.79975 4.86437 4.95241 5.01841 5.09328 5.16019 5.19344 5.36451 5.41508 5.46180 5.51481 5.64621 5.84737 6.27849 6.66077 6.72156 7.29584 8.82544 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.022165 B = 0.003400 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.963156 B = 8233.135501 C = 8411.113858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.028 3.972 3 Si 0.914 3.086 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.218 1.218 7 C -0.476 4.476 8 H 0.039 0.961 9 C -0.043 4.043 10 C 0.107 3.893 11 O -0.333 6.333 12 C 0.483 3.517 13 O -0.552 6.552 14 C -0.189 4.189 15 C -0.003 4.003 16 C -0.130 4.130 17 C -0.076 4.076 18 C -0.128 4.128 19 C -0.066 4.066 20 C -0.158 4.158 21 C 0.100 3.900 22 F -0.146 7.146 23 C -0.156 4.156 24 C -0.168 4.168 25 H 0.266 0.734 26 H 0.037 0.963 27 H 0.069 0.931 28 H 0.166 0.834 29 H 0.127 0.873 30 H 0.150 0.850 31 H 0.164 0.836 32 H 0.172 0.828 33 H 0.160 0.840 34 H 0.087 0.913 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.889 -9.619 -19.034 22.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.171 4.171 3 Si 0.738 3.262 4 H -0.214 1.214 5 H -0.212 1.212 6 H -0.140 1.140 7 C -0.514 4.514 8 H 0.057 0.943 9 C -0.044 4.044 10 C 0.033 3.967 11 O -0.248 6.248 12 C 0.332 3.668 13 O -0.446 6.446 14 C -0.207 4.207 15 C -0.021 4.021 16 C -0.131 4.131 17 C -0.094 4.094 18 C -0.146 4.146 19 C -0.083 4.083 20 C -0.177 4.177 21 C 0.081 3.919 22 F -0.124 7.124 23 C -0.193 4.193 24 C -0.206 4.206 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.184 0.816 29 H 0.145 0.855 30 H 0.167 0.833 31 H 0.181 0.819 32 H 0.189 0.811 33 H 0.178 0.822 34 H 0.105 0.895 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.011 -9.223 -19.007 22.594 hybrid contribution 0.181 1.531 0.280 1.567 sum 8.192 -7.692 -18.727 21.840 Atomic orbital electron populations 1.70019 1.07984 1.27955 1.52208 1.25652 0.95162 1.02282 0.93963 0.86267 0.81929 0.79808 0.78150 1.21413 1.21209 1.14008 1.20373 0.89057 0.92999 1.48925 0.94293 1.19244 0.93008 1.03837 0.88308 1.22434 0.97857 0.90980 0.85455 1.86276 1.68189 1.53409 1.16926 1.21967 0.78048 0.82311 0.84500 1.90800 1.34472 1.32987 1.86323 1.22229 1.05460 1.03625 0.89377 1.22274 0.94929 0.94104 0.90838 1.18986 1.01596 1.01086 0.91440 1.21705 0.93533 0.92670 1.01483 1.21612 1.00865 1.00139 0.91981 1.21680 0.92891 0.95106 0.98670 1.21445 1.00152 0.97477 0.98613 1.18229 0.89061 0.90191 0.94442 1.91482 1.60924 1.64057 1.95978 1.22860 1.01444 0.91389 1.03575 1.23141 1.01025 0.99006 0.97407 0.92491 0.94436 0.91285 0.81630 0.85533 0.83270 0.81870 0.81059 0.82244 0.89461 0.88087 0.88267 0.89205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 2 C 0.03 1.61 5.47 84.65 0.46 2.07 16 3 Si 0.91 44.65 24.98 68.60 1.71 46.36 16 4 H -0.29 -14.35 7.02 99.48 0.70 -13.65 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 6 H -0.22 -9.45 5.72 99.48 0.57 -8.88 16 7 C -0.48 -27.16 9.32 25.60 0.24 -26.92 16 8 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 9 C -0.04 -2.00 1.06 -52.93 -0.06 -2.06 16 10 C 0.11 4.84 4.91 71.98 0.35 5.19 16 11 O -0.33 -14.82 10.05 -58.36 -0.59 -15.41 16 12 C 0.48 19.20 7.86 69.87 0.55 19.75 16 13 O -0.55 -24.11 15.95 19.40 0.31 -23.80 16 14 C -0.19 -5.67 9.53 23.58 0.22 -5.45 16 15 C 0.00 -0.08 9.26 23.84 0.22 0.14 16 16 C -0.13 -2.83 5.87 -20.11 -0.12 -2.95 16 17 C -0.08 -1.28 9.41 22.57 0.21 -1.07 16 18 C -0.13 -1.44 10.02 22.23 0.22 -1.21 16 19 C -0.07 -0.62 10.04 22.34 0.22 -0.39 16 20 C -0.16 -2.12 10.01 22.28 0.22 -1.90 16 21 C 0.10 2.03 7.30 22.72 0.17 2.20 16 22 F -0.15 -3.46 16.62 44.97 0.75 -2.71 16 23 C -0.16 -5.99 9.96 30.62 0.30 -5.69 16 24 C -0.17 -6.59 8.02 30.62 0.25 -6.35 16 25 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 26 H 0.04 1.83 5.07 -2.39 -0.01 1.82 16 27 H 0.07 2.79 7.94 -2.39 -0.02 2.78 16 28 H 0.17 4.13 6.08 -2.91 -0.02 4.11 16 29 H 0.13 3.71 7.21 -2.91 -0.02 3.69 16 30 H 0.15 2.25 6.17 -2.91 -0.02 2.23 16 31 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 32 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 35 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 36 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 37 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 Total: -1.00 -73.12 325.01 6.90 -66.22 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.94 Total: 12.58 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 3.47 Total: -24.63 kcal Atomic # 7 Polarization: -58.92 SS G_CDS: 0.30 Total: -58.62 kcal Atomic # 8 Polarization: -38.93 SS G_CDS: -0.28 Total: -39.21 kcal Atomic # 9 Polarization: -3.46 SS G_CDS: 0.75 Total: -2.71 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.71 Total: 46.36 kcal Total: -73.12 6.90 -66.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277484.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.935 kcal (2) G-P(sol) polarization free energy of solvation -73.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.51 seconds