Wall clock time and date at job start Tue Mar 31 2020 08:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00414 * 2 1 4 4 H 1.48499 * 109.46931 * 89.99757 * 3 2 1 5 5 H 1.48497 * 109.47087 * 210.00406 * 3 2 1 6 6 H 1.48501 * 109.46973 * 330.00473 * 3 2 1 7 7 C 1.37874 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99747 * 186.97826 * 7 2 1 9 9 C 1.50697 * 120.00584 * 6.97740 * 7 2 1 10 10 C 1.52996 * 115.55198 * 274.13802 * 9 7 2 11 11 O 1.42902 * 109.47280 * 293.61046 * 10 9 7 12 12 C 1.34917 * 117.00329 * 184.75459 * 11 10 9 13 13 O 1.21634 * 119.99810 * 359.97438 * 12 11 10 14 14 C 1.46134 * 119.99960 * 179.97438 * 12 11 10 15 15 C 1.35002 * 120.00086 * 184.16366 * 14 12 11 16 16 C 1.47049 * 120.00143 * 9.18532 * 15 14 12 17 17 C 1.39919 * 120.19030 * 49.79715 * 16 15 14 18 18 C 1.37804 * 119.84801 * 179.70005 * 17 16 15 19 19 C 1.38494 * 120.24237 * 0.60391 * 18 17 16 20 20 C 1.38270 * 120.38959 * 359.67380 * 19 18 17 21 21 C 1.38227 * 120.14705 * 0.02562 * 20 19 18 22 22 F 1.35097 * 120.12067 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.50317 * 128.46328 * 9 7 2 24 24 C 1.53006 * 117.49722 * 59.80276 * 9 7 2 25 25 H 0.96995 * 120.00505 * 175.40835 * 1 2 3 26 26 H 1.09002 * 109.47020 * 53.60825 * 10 9 7 27 27 H 1.08998 * 109.47403 * 173.60685 * 10 9 7 28 28 H 1.08001 * 119.99799 * 4.16584 * 14 12 11 29 29 H 1.07999 * 120.00302 * 189.18596 * 15 14 12 30 30 H 1.07999 * 120.07475 * 359.97438 * 17 16 15 31 31 H 1.07995 * 119.87534 * 180.27594 * 18 17 16 32 32 H 1.07996 * 119.80352 * 179.69602 * 19 18 17 33 33 H 1.08005 * 119.92391 * 180.02562 * 20 19 18 34 34 H 1.09009 * 117.49944 * 359.97438 * 23 9 7 35 35 H 1.08999 * 117.50227 * 145.02057 * 23 9 7 36 36 H 1.09004 * 117.50068 * 214.98313 * 24 9 7 37 37 H 1.08995 * 117.49908 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4400 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0785 -1.1977 0.1131 9 6 1.2593 -2.4943 -0.1596 10 6 0.7022 -3.0979 1.1311 11 8 1.7836 -3.4949 1.9768 12 6 1.4638 -4.1390 3.1184 13 8 0.2978 -4.3566 3.3878 14 6 2.5184 -4.5751 4.0312 15 6 2.2051 -5.2927 5.1309 16 6 0.8394 -5.8082 5.3081 17 6 0.2127 -6.5108 4.2730 18 6 -1.0650 -6.9962 4.4489 19 6 -1.7352 -6.7801 5.6415 20 6 -1.1276 -6.0821 6.6688 21 6 0.1559 -5.5935 6.5121 22 9 0.7488 -4.9111 7.5160 23 6 1.7501 -3.4625 -1.2378 24 6 0.4444 -2.6894 -1.4399 25 1 -0.4850 -0.8373 -0.0672 26 1 0.0923 -2.3553 1.6458 27 1 0.0904 -3.9674 0.8912 28 1 3.5484 -4.3232 3.8261 29 1 2.9575 -5.4883 5.8807 30 1 0.7309 -6.6763 3.3400 31 1 -1.5474 -7.5424 3.6519 32 1 -2.7382 -7.1594 5.7699 33 1 -1.6571 -5.9184 7.5958 34 1 2.6117 -3.1589 -1.8325 35 1 1.6758 -4.5294 -1.0277 36 1 -0.4883 -3.2481 -1.3626 37 1 0.4469 -1.8772 -2.1667 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:27 Heat of formation + Delta-G solvation = -59.133332 kcal Electronic energy + Delta-G solvation = -22421.326988 eV Core-core repulsion = 18851.739325 eV Total energy + Delta-G solvation = -3569.587663 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.92798 -40.18935 -38.80068 -37.12772 -35.58564 -33.96340 -31.91148 -30.63285 -29.92242 -27.17114 -24.95046 -24.24201 -22.67215 -22.02526 -21.33728 -19.59602 -19.30151 -17.96594 -17.31653 -16.87423 -16.29535 -16.07044 -15.65395 -15.62495 -15.02359 -14.31171 -14.13656 -13.92520 -13.74774 -13.33580 -13.17571 -12.99604 -12.53221 -12.45829 -12.07468 -11.90029 -11.71806 -11.19884 -10.94443 -10.82335 -10.52986 -10.31277 -10.12719 -9.98126 -9.92114 -9.58054 -8.72214 -8.59636 -8.50722 -8.38990 -8.33628 -6.38695 -4.12143 0.56199 1.22350 1.59238 3.20156 3.34227 3.42742 3.45731 3.59011 3.61541 4.18817 4.48647 4.49500 4.70096 4.83975 4.95552 5.14795 5.19465 5.27988 5.34916 5.38945 5.73039 5.77304 5.84059 5.94783 6.02251 6.08109 6.10854 6.12669 6.26401 6.30989 6.38175 6.46442 6.52635 6.77746 6.84432 7.03497 7.16357 7.24617 8.18138 8.33254 8.40996 8.83412 9.61915 11.00580 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.004017 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.800669 B = 6967.865907 C = 7422.548266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.025 3.975 3 Si 1.071 2.929 4 H -0.288 1.288 5 H -0.287 1.287 6 H -0.284 1.284 7 C -0.566 4.566 8 H 0.056 0.944 9 C 0.015 3.985 10 C 0.111 3.889 11 O -0.323 6.323 12 C 0.475 3.525 13 O -0.508 6.508 14 C -0.164 4.164 15 C -0.033 4.033 16 C -0.099 4.099 17 C -0.019 4.019 18 C -0.138 4.138 19 C -0.082 4.082 20 C -0.165 4.165 21 C 0.112 3.888 22 F -0.139 7.139 23 C -0.189 4.189 24 C -0.169 4.169 25 H 0.273 0.727 26 H 0.065 0.935 27 H 0.038 0.962 28 H 0.149 0.851 29 H 0.146 0.854 30 H 0.123 0.877 31 H 0.127 0.873 32 H 0.129 0.871 33 H 0.133 0.867 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.932 -14.386 10.274 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.180 4.180 3 Si 0.899 3.101 4 H -0.214 1.214 5 H -0.213 1.213 6 H -0.210 1.210 7 C -0.604 4.604 8 H 0.075 0.925 9 C 0.014 3.986 10 C 0.037 3.963 11 O -0.238 6.238 12 C 0.321 3.679 13 O -0.400 6.400 14 C -0.182 4.182 15 C -0.051 4.051 16 C -0.100 4.100 17 C -0.038 4.038 18 C -0.156 4.156 19 C -0.100 4.100 20 C -0.184 4.184 21 C 0.093 3.907 22 F -0.118 7.118 23 C -0.226 4.226 24 C -0.206 4.206 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.056 0.944 28 H 0.166 0.834 29 H 0.164 0.836 30 H 0.141 0.859 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.102 0.898 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 0.397 -12.733 10.389 16.439 hybrid contribution 0.097 -1.408 0.058 1.412 sum 0.494 -14.141 10.447 17.588 Atomic orbital electron populations 1.70729 1.06808 1.31438 1.45070 1.25845 0.96525 1.02446 0.93223 0.83520 0.74743 0.74983 0.76869 1.21429 1.21330 1.20969 1.21244 0.94509 0.89312 1.55309 0.92535 1.19076 0.99338 0.95794 0.84382 1.22539 0.86400 0.96571 0.90824 1.86241 1.40719 1.66719 1.30107 1.21437 0.88808 0.76128 0.81502 1.90898 1.21225 1.53443 1.74416 1.22479 0.99363 1.01794 0.94597 1.22304 0.94538 0.92879 0.95406 1.18912 0.95194 1.02366 0.93519 1.20972 0.94468 0.92588 0.95733 1.21015 0.94941 1.01827 0.97822 1.21026 0.99489 0.96833 0.92657 1.20946 0.93960 1.02258 1.01245 1.17738 0.92326 0.95778 0.84835 1.91476 1.83858 1.77475 1.58942 1.22876 0.97866 0.95561 1.06280 1.22789 0.93242 1.02261 1.02311 0.91577 0.91664 0.94351 0.83358 0.83636 0.85902 0.85512 0.85306 0.84954 0.89757 0.91386 0.91300 0.89149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.74 13.56 55.43 0.75 -25.98 16 2 C 0.03 0.70 5.38 -17.82 -0.10 0.61 16 3 Si 1.07 24.99 29.91 -169.99 -5.08 19.90 16 4 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.57 -15.70 8.78 -34.44 -0.30 -16.00 16 8 H 0.06 1.59 7.82 -52.48 -0.41 1.18 16 9 C 0.01 0.36 1.17 -155.66 -0.18 0.18 16 10 C 0.11 2.60 5.17 37.16 0.19 2.80 16 11 O -0.32 -7.08 10.07 -41.09 -0.41 -7.49 16 12 C 0.48 8.96 7.22 33.90 0.24 9.20 16 13 O -0.51 -10.26 11.90 -19.37 -0.23 -10.49 16 14 C -0.16 -2.31 10.08 -37.57 -0.38 -2.69 16 15 C -0.03 -0.41 9.44 -37.16 -0.35 -0.76 16 16 C -0.10 -1.38 4.37 -105.00 -0.46 -1.83 16 17 C -0.02 -0.26 6.67 -39.11 -0.26 -0.52 16 18 C -0.14 -1.65 10.03 -39.65 -0.40 -2.05 16 19 C -0.08 -0.90 10.04 -39.48 -0.40 -1.30 16 20 C -0.17 -1.96 10.01 -39.57 -0.40 -2.36 16 21 C 0.11 1.54 7.30 -38.89 -0.28 1.26 16 22 F -0.14 -1.93 16.84 2.25 0.04 -1.89 16 23 C -0.19 -4.07 9.96 -26.69 -0.27 -4.34 16 24 C -0.17 -3.83 8.62 -26.69 -0.23 -4.06 16 25 H 0.27 7.98 6.31 -40.82 -0.26 7.72 16 26 H 0.07 1.70 8.01 -51.93 -0.42 1.28 16 27 H 0.04 0.84 7.96 -51.93 -0.41 0.42 16 28 H 0.15 1.73 8.06 -52.49 -0.42 1.31 16 29 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.12 1.63 7.48 -52.49 -0.39 1.24 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.27 8.06 -52.48 -0.42 0.85 16 34 H 0.08 1.80 8.14 -51.92 -0.42 1.38 16 35 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 LS Contribution 328.27 15.07 4.95 4.95 Total: -1.00 -31.79 328.27 -8.05 -39.83 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.49 Total: 3.03 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -3.56 Total: -21.86 kcal Atomic # 7 Polarization: -26.74 SS G_CDS: 0.75 Total: -25.98 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.64 Total: -17.98 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 24.99 SS G_CDS: -5.08 Total: 19.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.79 -8.05 -39.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.301 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds