Wall clock time and date at job start Tue Mar 31 2020 08:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00414 * 2 1 4 4 H 1.48499 * 109.46931 * 89.99757 * 3 2 1 5 5 H 1.48497 * 109.47087 * 210.00406 * 3 2 1 6 6 H 1.48501 * 109.46973 * 330.00473 * 3 2 1 7 7 C 1.37874 * 119.99450 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99747 * 186.97826 * 7 2 1 9 9 C 1.50697 * 120.00584 * 6.97740 * 7 2 1 10 10 C 1.52996 * 115.55198 * 274.13802 * 9 7 2 11 11 O 1.42902 * 109.47280 * 293.61046 * 10 9 7 12 12 C 1.34917 * 117.00329 * 184.75459 * 11 10 9 13 13 O 1.21634 * 119.99810 * 359.97438 * 12 11 10 14 14 C 1.46134 * 119.99960 * 179.97438 * 12 11 10 15 15 C 1.35002 * 120.00086 * 184.16366 * 14 12 11 16 16 C 1.47049 * 120.00143 * 9.18532 * 15 14 12 17 17 C 1.39919 * 120.19030 * 49.79715 * 16 15 14 18 18 C 1.37804 * 119.84801 * 179.70005 * 17 16 15 19 19 C 1.38494 * 120.24237 * 0.60391 * 18 17 16 20 20 C 1.38270 * 120.38959 * 359.67380 * 19 18 17 21 21 C 1.38227 * 120.14705 * 0.02562 * 20 19 18 22 22 F 1.35097 * 120.12067 * 179.97438 * 21 20 19 23 23 C 1.52997 * 117.50317 * 128.46328 * 9 7 2 24 24 C 1.53006 * 117.49722 * 59.80276 * 9 7 2 25 25 H 0.96995 * 120.00505 * 175.40835 * 1 2 3 26 26 H 1.09002 * 109.47020 * 53.60825 * 10 9 7 27 27 H 1.08998 * 109.47403 * 173.60685 * 10 9 7 28 28 H 1.08001 * 119.99799 * 4.16584 * 14 12 11 29 29 H 1.07999 * 120.00302 * 189.18596 * 15 14 12 30 30 H 1.07999 * 120.07475 * 359.97438 * 17 16 15 31 31 H 1.07995 * 119.87534 * 180.27594 * 18 17 16 32 32 H 1.07996 * 119.80352 * 179.69602 * 19 18 17 33 33 H 1.08005 * 119.92391 * 180.02562 * 20 19 18 34 34 H 1.09009 * 117.49944 * 359.97438 * 23 9 7 35 35 H 1.08999 * 117.50227 * 145.02057 * 23 9 7 36 36 H 1.09004 * 117.50068 * 214.98313 * 24 9 7 37 37 H 1.08995 * 117.49908 * 359.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4400 -0.7001 6 1 1.4467 2.6526 -0.6999 7 6 2.0044 -1.1941 -0.0005 8 1 3.0785 -1.1977 0.1131 9 6 1.2593 -2.4943 -0.1596 10 6 0.7022 -3.0979 1.1311 11 8 1.7836 -3.4949 1.9768 12 6 1.4638 -4.1390 3.1184 13 8 0.2978 -4.3566 3.3878 14 6 2.5184 -4.5751 4.0312 15 6 2.2051 -5.2927 5.1309 16 6 0.8394 -5.8082 5.3081 17 6 0.2127 -6.5108 4.2730 18 6 -1.0650 -6.9962 4.4489 19 6 -1.7352 -6.7801 5.6415 20 6 -1.1276 -6.0821 6.6688 21 6 0.1559 -5.5935 6.5121 22 9 0.7488 -4.9111 7.5160 23 6 1.7501 -3.4625 -1.2378 24 6 0.4444 -2.6894 -1.4399 25 1 -0.4850 -0.8373 -0.0672 26 1 0.0923 -2.3553 1.6458 27 1 0.0904 -3.9674 0.8912 28 1 3.5484 -4.3232 3.8261 29 1 2.9575 -5.4883 5.8807 30 1 0.7309 -6.6763 3.3400 31 1 -1.5474 -7.5424 3.6519 32 1 -2.7382 -7.1594 5.7699 33 1 -1.6571 -5.9184 7.5958 34 1 2.6117 -3.1589 -1.8325 35 1 1.6758 -4.5294 -1.0277 36 1 -0.4883 -3.2481 -1.3626 37 1 0.4469 -1.8772 -2.1667 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277485.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:35:26 Heat of formation + Delta-G solvation = -74.773883 kcal Electronic energy + Delta-G solvation = -22422.005214 eV Core-core repulsion = 18851.739325 eV Total energy + Delta-G solvation = -3570.265888 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 4.52 seconds Orbital eigenvalues (eV) -49.96276 -41.64123 -39.92265 -38.82004 -37.19879 -35.08372 -34.00418 -31.58226 -30.97957 -28.85387 -26.99978 -25.49034 -23.71491 -23.26372 -22.99722 -21.52579 -20.59553 -19.14781 -18.88786 -18.40020 -17.46380 -17.40815 -17.17955 -16.68069 -16.27869 -15.73792 -15.61506 -15.33381 -15.06972 -14.79601 -14.55065 -14.29793 -14.17077 -13.86689 -13.64159 -13.19679 -12.87874 -12.68990 -12.68133 -12.28731 -12.14624 -11.93805 -11.74180 -11.66693 -11.40136 -10.99931 -10.54475 -10.46129 -10.40435 -9.70947 -9.40130 -8.58973 -6.32378 -0.50670 0.24341 0.56255 1.53326 1.61090 1.78711 1.79519 1.93901 2.56567 2.63499 3.17989 3.20994 3.21737 3.50884 3.75300 3.81143 3.96756 4.03515 4.19658 4.24111 4.29568 4.32333 4.42994 4.44824 4.57549 4.77205 4.77530 4.87702 4.96485 5.01500 5.09368 5.17579 5.22776 5.35298 5.39439 5.46138 5.61128 5.91555 6.11721 6.20143 6.64998 6.80359 7.48665 8.81377 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.004017 C = 0.003771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.800669 B = 6967.865907 C = 7422.548266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.021 4.021 3 Si 1.112 2.888 4 H -0.280 1.280 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.576 4.576 8 H 0.045 0.955 9 C -0.023 4.023 10 C 0.128 3.872 11 O -0.340 6.340 12 C 0.469 3.531 13 O -0.528 6.528 14 C -0.185 4.185 15 C -0.004 4.004 16 C -0.125 4.125 17 C -0.037 4.037 18 C -0.145 4.145 19 C -0.078 4.078 20 C -0.170 4.170 21 C 0.093 3.907 22 F -0.144 7.144 23 C -0.162 4.162 24 C -0.165 4.165 25 H 0.263 0.737 26 H 0.027 0.973 27 H 0.051 0.949 28 H 0.173 0.827 29 H 0.185 0.815 30 H 0.118 0.882 31 H 0.146 0.854 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.368 -15.620 11.108 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.221 4.221 3 Si 0.935 3.065 4 H -0.206 1.206 5 H -0.194 1.194 6 H -0.208 1.208 7 C -0.613 4.613 8 H 0.063 0.937 9 C -0.024 4.024 10 C 0.053 3.947 11 O -0.256 6.256 12 C 0.317 3.683 13 O -0.420 6.420 14 C -0.203 4.203 15 C -0.022 4.022 16 C -0.126 4.126 17 C -0.056 4.056 18 C -0.163 4.163 19 C -0.096 4.096 20 C -0.188 4.188 21 C 0.074 3.926 22 F -0.122 7.122 23 C -0.199 4.199 24 C -0.202 4.202 25 H 0.074 0.926 26 H 0.045 0.955 27 H 0.069 0.931 28 H 0.191 0.809 29 H 0.202 0.798 30 H 0.136 0.864 31 H 0.164 0.836 32 H 0.180 0.820 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.846 -13.995 11.228 17.963 hybrid contribution -0.106 -1.166 -0.106 1.176 sum 0.740 -15.162 11.122 18.818 Atomic orbital electron populations 1.70833 1.07677 1.30940 1.47374 1.27128 0.96607 1.05824 0.92528 0.82989 0.74436 0.71640 0.77440 1.20575 1.19378 1.20820 1.21508 0.94211 0.91001 1.54629 0.93671 1.19170 1.01283 0.96181 0.85724 1.22081 0.86476 0.95862 0.90261 1.86238 1.40231 1.67711 1.31394 1.22286 0.89887 0.75208 0.80889 1.90881 1.22374 1.54225 1.74564 1.22522 0.99117 1.04142 0.94554 1.22769 0.94739 0.89895 0.94762 1.19185 0.96209 1.03265 0.93922 1.21095 0.95389 0.93491 0.95594 1.21370 0.94505 1.01524 0.98902 1.21444 1.00699 0.95699 0.91752 1.21317 0.93424 1.01611 1.02455 1.18003 0.93279 0.96535 0.84812 1.91459 1.84041 1.77692 1.59053 1.22897 0.97077 0.96413 1.03543 1.22727 0.94718 1.02188 1.00600 0.92615 0.95495 0.93072 0.80947 0.79844 0.86419 0.83627 0.82010 0.82761 0.89560 0.88677 0.89468 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.23 13.56 21.45 0.29 -55.94 16 2 C -0.02 -1.21 5.38 84.65 0.46 -0.76 16 3 Si 1.11 50.48 29.91 68.60 2.05 52.53 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.58 -32.36 8.78 25.60 0.22 -32.13 16 8 H 0.05 2.57 7.82 -2.91 -0.02 2.54 16 9 C -0.02 -1.15 1.17 -52.93 -0.06 -1.21 16 10 C 0.13 6.12 5.17 71.98 0.37 6.49 16 11 O -0.34 -15.07 10.07 -58.33 -0.59 -15.66 16 12 C 0.47 17.76 7.22 69.87 0.50 18.26 16 13 O -0.53 -21.55 11.90 19.40 0.23 -21.32 16 14 C -0.18 -5.02 10.08 23.58 0.24 -4.79 16 15 C 0.00 -0.09 9.44 23.84 0.23 0.14 16 16 C -0.12 -3.34 4.37 -20.11 -0.09 -3.43 16 17 C -0.04 -0.99 6.67 22.57 0.15 -0.84 16 18 C -0.15 -3.24 10.03 22.23 0.22 -3.02 16 19 C -0.08 -1.53 10.04 22.34 0.22 -1.31 16 20 C -0.17 -3.69 10.01 22.27 0.22 -3.47 16 21 C 0.09 2.43 7.30 22.72 0.17 2.59 16 22 F -0.14 -3.81 16.84 44.97 0.76 -3.05 16 23 C -0.16 -6.80 9.96 30.62 0.30 -6.49 16 24 C -0.16 -7.45 8.62 30.62 0.26 -7.19 16 25 H 0.26 15.90 6.31 -92.71 -0.59 15.32 16 26 H 0.03 1.46 8.01 -2.39 -0.02 1.44 16 27 H 0.05 2.25 7.96 -2.39 -0.02 2.23 16 28 H 0.17 3.73 8.06 -2.91 -0.02 3.71 16 29 H 0.18 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.12 3.12 7.48 -2.91 -0.02 3.09 16 31 H 0.15 2.59 8.06 -2.91 -0.02 2.56 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 34 H 0.09 3.56 8.14 -2.38 -0.02 3.54 16 35 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 36 H 0.09 3.56 8.14 -2.39 -0.02 3.54 16 37 H 0.07 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -69.90 328.27 7.43 -62.48 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: 1.26 Total: 18.10 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 3.43 Total: -37.14 kcal Atomic # 7 Polarization: -56.23 SS G_CDS: 0.29 Total: -55.94 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.36 Total: -36.98 kcal Atomic # 9 Polarization: -3.81 SS G_CDS: 0.76 Total: -3.05 kcal Atomic # 14 Polarization: 50.48 SS G_CDS: 2.05 Total: 52.53 kcal Total: -69.90 7.43 -62.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277485.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.298 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.52 seconds