Wall clock time and date at job start Tue Mar 31 2020 07:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 C 1.50700 * 109.47023 * 120.00190 * 2 1 3 5 5 O 1.20830 * 120.00374 * 114.94651 * 4 2 1 6 6 O 1.34228 * 119.99940 * 294.93848 * 4 2 1 7 7 C 1.45200 * 117.00090 * 185.52461 * 6 4 2 8 8 C 1.53005 * 109.46948 * 175.41080 * 7 6 4 9 9 C 1.50700 * 115.54939 * 65.34801 * 8 7 6 10 10 H 1.07997 * 119.99998 * 264.64898 * 9 8 7 11 11 C 1.37884 * 120.00115 * 84.64361 * 9 8 7 12 12 N 1.31515 * 119.99716 * 1.88760 * 11 9 8 13 13 Si 1.86798 * 119.99911 * 181.88261 * 11 9 8 14 14 H 1.48493 * 109.47226 * 90.00457 * 13 11 9 15 15 H 1.48502 * 109.46806 * 210.00613 * 13 11 9 16 16 H 1.48500 * 109.47202 * 329.99896 * 13 11 9 17 17 C 1.52999 * 117.50173 * 279.67161 * 8 7 6 18 18 C 1.53000 * 117.49703 * 211.01111 * 8 7 6 19 19 S 1.81399 * 109.46865 * 239.99618 * 2 1 3 20 20 C 1.81404 * 101.92080 * 60.00216 * 19 2 1 21 21 O 1.42093 * 108.58018 * 174.48686 * 19 2 1 22 22 O 1.42100 * 108.58198 * 305.51616 * 19 2 1 23 23 H 1.09004 * 109.46590 * 302.41176 * 1 2 3 24 24 H 1.08992 * 109.47681 * 62.41484 * 1 2 3 25 25 H 1.09007 * 109.47193 * 182.42029 * 1 2 3 26 26 H 1.08996 * 109.46953 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46920 * 299.99656 * 3 2 1 28 28 H 1.08999 * 109.47292 * 60.00126 * 3 2 1 29 29 H 1.08994 * 109.47655 * 295.41506 * 7 6 4 30 30 H 1.09001 * 109.46749 * 55.41420 * 7 6 4 31 31 H 0.96998 * 119.99853 * 185.01931 * 12 11 9 32 32 H 1.09001 * 117.49609 * 0.02562 * 17 8 7 33 33 H 1.08996 * 117.49600 * 145.02143 * 17 8 7 34 34 H 1.08996 * 117.50033 * 214.98026 * 18 8 7 35 35 H 1.09000 * 117.50033 * 359.97438 * 18 8 7 36 36 H 1.08998 * 109.47159 * 59.99693 * 20 19 2 37 37 H 1.09000 * 109.47449 * 180.02562 * 20 19 2 38 38 H 1.09003 * 109.46669 * 299.99621 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6498 -1.7434 1.1220 6 8 1.7939 -0.1957 2.4470 7 6 2.4110 -0.8647 3.5783 8 6 2.1224 -0.0754 4.8569 9 6 0.6750 -0.0175 5.2724 10 1 0.0645 0.8263 4.9866 11 6 0.1301 -1.0419 6.0173 12 7 0.8828 -2.0514 6.3968 13 14 -1.6772 -0.9957 6.4875 14 1 -2.4800 -1.6677 5.4345 15 1 -1.8701 -1.6987 7.7813 16 1 -2.1180 0.4161 6.6209 17 6 2.9879 1.1545 5.1384 18 6 3.1747 -0.1192 5.9667 19 16 2.1346 -0.8552 -1.4811 20 6 1.4228 0.1514 -2.8118 21 8 3.5495 -0.7332 -1.5285 22 8 1.5478 -2.1485 -1.5284 23 1 -0.3632 0.5509 0.8676 24 1 -0.3634 0.4758 -0.9107 25 1 -0.3634 -1.0268 0.0434 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 2.0026 -1.8708 3.6725 30 1 3.4882 -0.9229 3.4226 31 1 0.4850 -2.8066 6.8575 32 1 3.7626 1.4015 4.4125 33 1 2.5105 2.0053 5.6244 34 1 2.8201 -0.1056 6.9973 35 1 4.0723 -0.7106 5.7862 36 1 1.7893 1.1746 -2.7292 37 1 1.7150 -0.2628 -3.7768 38 1 0.3359 0.1469 -2.7291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000744277541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:34 Heat of formation + Delta-G solvation = -128.290957 kcal Electronic energy + Delta-G solvation = -22287.314458 eV Core-core repulsion = 18837.799058 eV Total energy + Delta-G solvation = -3449.515401 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 3.15 seconds Orbital eigenvalues (eV) -40.25111 -37.10610 -37.03630 -36.08881 -35.45012 -35.35819 -32.00279 -29.79907 -27.70150 -27.10325 -25.38479 -23.98763 -21.34394 -20.89012 -19.36332 -18.67917 -17.44089 -17.18054 -16.38164 -16.10665 -15.99668 -15.72015 -15.15283 -14.67253 -14.09531 -13.92820 -13.66930 -13.35595 -13.27776 -13.07178 -12.76705 -12.39820 -12.24751 -12.10722 -12.04802 -11.98777 -11.66967 -11.61214 -11.15687 -11.03680 -10.92122 -10.59173 -10.58608 -10.34976 -10.24372 -10.00544 -9.57950 -8.97547 -8.50077 -8.26887 -6.10725 -4.18135 -0.27448 2.36910 2.50901 2.79413 3.25437 3.32836 3.34620 3.71397 3.79709 4.27280 4.34333 4.40489 4.49532 4.71071 4.77437 5.14987 5.16889 5.17987 5.33669 5.37325 5.44423 5.45808 5.87478 5.91942 5.98132 6.15215 6.24572 6.42914 6.55150 6.67112 6.99951 7.01846 7.27562 7.43190 7.81155 8.04345 8.32399 8.83677 9.48302 10.98022 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.004892 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.084198 B = 5722.402675 C = 6152.267323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.549 4.549 3 C -0.140 4.140 4 C 0.490 3.510 5 O -0.509 6.509 6 O -0.318 6.318 7 C 0.112 3.888 8 C 0.034 3.966 9 C -0.489 4.489 10 H 0.063 0.937 11 C 0.069 3.931 12 N -0.881 5.881 13 Si 0.892 3.108 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.273 1.273 17 C -0.206 4.206 18 C -0.139 4.139 19 S 2.448 3.552 20 C -0.662 4.662 21 O -0.922 6.922 22 O -0.917 6.917 23 H 0.099 0.901 24 H 0.079 0.921 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.078 0.922 30 H 0.045 0.955 31 H 0.262 0.738 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 7.741 -15.753 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.636 4.636 3 C -0.198 4.198 4 C 0.331 3.669 5 O -0.399 6.399 6 O -0.232 6.232 7 C 0.039 3.961 8 C 0.033 3.967 9 C -0.527 4.527 10 H 0.081 0.919 11 C -0.134 4.134 12 N -0.518 5.518 13 Si 0.720 3.280 14 H -0.206 1.206 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.243 4.243 18 C -0.176 4.176 19 S 2.624 3.376 20 C -0.811 4.811 21 O -0.919 6.919 22 O -0.914 6.914 23 H 0.118 0.882 24 H 0.097 0.903 25 H 0.101 0.899 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.151 0.849 37 H 0.152 0.848 38 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.220 6.545 -15.573 16.893 hybrid contribution -1.413 0.439 0.428 1.540 sum -1.192 6.984 -15.145 16.720 Atomic orbital electron populations 1.21816 0.86987 1.05406 1.05570 1.30294 1.09040 1.10789 1.13463 1.21821 1.02731 0.89448 1.05795 1.21845 0.76759 0.82712 0.85605 1.90771 1.38839 1.22965 1.87366 1.86483 1.66997 1.55725 1.14011 1.23102 0.94031 0.97311 0.81653 1.18787 0.93430 0.94528 0.89951 1.20370 0.93042 1.06582 1.32712 0.91904 1.25024 0.97846 0.95802 0.94772 1.69982 1.34820 1.07919 1.39037 0.86585 0.85222 0.78260 0.77965 1.20565 1.21162 1.19746 1.23014 1.03781 0.93234 1.04267 1.22538 0.99116 0.98343 0.97625 1.07615 0.76114 0.76500 0.77366 1.30423 1.14479 1.16880 1.19299 1.93573 1.26575 1.86558 1.85243 1.93586 1.79247 1.33528 1.85058 0.88234 0.90266 0.89851 0.90075 0.90257 0.88253 0.90409 0.93712 0.92788 0.91542 0.90038 0.89113 0.91633 0.84868 0.84834 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 8.24 37.16 0.31 -1.18 16 2 C -0.55 -7.21 0.81 -91.77 -0.07 -7.29 16 3 C -0.14 -1.38 8.11 37.16 0.30 -1.08 16 4 C 0.49 9.38 6.57 36.01 0.24 9.61 16 5 O -0.51 -11.35 15.38 -21.45 -0.33 -11.68 16 6 O -0.32 -6.70 9.90 -39.25 -0.39 -7.09 16 7 C 0.11 2.63 5.31 37.16 0.20 2.82 16 8 C 0.03 0.82 1.66 -155.66 -0.26 0.56 16 9 C -0.49 -13.00 8.78 -34.44 -0.30 -13.31 16 10 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 11 C 0.07 1.85 5.43 -17.82 -0.10 1.75 16 12 N -0.88 -24.61 12.73 55.43 0.71 -23.90 16 13 Si 0.89 20.73 29.54 -169.99 -5.02 15.71 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 17 C -0.21 -4.37 9.96 -26.69 -0.27 -4.63 16 18 C -0.14 -3.18 9.23 -26.69 -0.25 -3.43 16 19 S 2.45 31.56 3.66 -107.50 -0.39 31.16 16 20 C -0.66 -4.08 9.72 101.05 0.98 -3.10 16 21 O -0.92 -14.87 17.85 -58.26 -1.04 -15.91 16 22 O -0.92 -15.25 17.72 -60.77 -1.08 -16.32 16 23 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.08 0.46 6.44 -51.93 -0.33 0.12 16 25 H 0.08 0.97 8.13 -51.92 -0.42 0.55 16 26 H 0.08 0.82 8.06 -51.93 -0.42 0.40 16 27 H 0.08 0.42 6.56 -51.93 -0.34 0.08 16 28 H 0.10 1.04 8.03 -51.93 -0.42 0.62 16 29 H 0.08 2.01 8.14 -51.93 -0.42 1.59 16 30 H 0.04 0.99 8.05 -51.93 -0.42 0.57 16 31 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.69 8.14 -51.93 -0.42 1.27 16 34 H 0.09 2.21 8.14 -51.93 -0.42 1.78 16 35 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.13 0.50 6.87 -51.92 -0.36 0.14 16 37 H 0.13 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.13 0.53 6.81 -51.92 -0.35 0.18 16 LS Contribution 333.98 15.07 5.03 5.03 Total: -1.00 -35.07 333.98 -7.30 -42.37 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -5.57 Total: -0.10 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 0.78 Total: -19.26 kcal Atomic # 7 Polarization: -24.61 SS G_CDS: 0.71 Total: -23.90 kcal Atomic # 8 Polarization: -48.17 SS G_CDS: -2.84 Total: -51.01 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 31.56 SS G_CDS: -0.39 Total: 31.16 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.07 -7.30 -42.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.923 kcal (2) G-P(sol) polarization free energy of solvation -35.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.15 seconds