Wall clock time and date at job start Tue Mar 31 2020 07:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 C 1.50700 * 109.47023 * 120.00190 * 2 1 3 5 5 O 1.20830 * 120.00374 * 114.94651 * 4 2 1 6 6 O 1.34228 * 119.99940 * 294.93848 * 4 2 1 7 7 C 1.45200 * 117.00090 * 185.52461 * 6 4 2 8 8 C 1.53005 * 109.46948 * 175.41080 * 7 6 4 9 9 C 1.50700 * 115.54939 * 65.34801 * 8 7 6 10 10 H 1.07997 * 119.99998 * 264.64898 * 9 8 7 11 11 C 1.37884 * 120.00115 * 84.64361 * 9 8 7 12 12 N 1.31515 * 119.99716 * 1.88760 * 11 9 8 13 13 Si 1.86798 * 119.99911 * 181.88261 * 11 9 8 14 14 H 1.48493 * 109.47226 * 90.00457 * 13 11 9 15 15 H 1.48502 * 109.46806 * 210.00613 * 13 11 9 16 16 H 1.48500 * 109.47202 * 329.99896 * 13 11 9 17 17 C 1.52999 * 117.50173 * 279.67161 * 8 7 6 18 18 C 1.53000 * 117.49703 * 211.01111 * 8 7 6 19 19 S 1.81399 * 109.46865 * 239.99618 * 2 1 3 20 20 C 1.81404 * 101.92080 * 60.00216 * 19 2 1 21 21 O 1.42093 * 108.58018 * 174.48686 * 19 2 1 22 22 O 1.42100 * 108.58198 * 305.51616 * 19 2 1 23 23 H 1.09004 * 109.46590 * 302.41176 * 1 2 3 24 24 H 1.08992 * 109.47681 * 62.41484 * 1 2 3 25 25 H 1.09007 * 109.47193 * 182.42029 * 1 2 3 26 26 H 1.08996 * 109.46953 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.46920 * 299.99656 * 3 2 1 28 28 H 1.08999 * 109.47292 * 60.00126 * 3 2 1 29 29 H 1.08994 * 109.47655 * 295.41506 * 7 6 4 30 30 H 1.09001 * 109.46749 * 55.41420 * 7 6 4 31 31 H 0.96998 * 119.99853 * 185.01931 * 12 11 9 32 32 H 1.09001 * 117.49609 * 0.02562 * 17 8 7 33 33 H 1.08996 * 117.49600 * 145.02143 * 17 8 7 34 34 H 1.08996 * 117.50033 * 214.98026 * 18 8 7 35 35 H 1.09000 * 117.50033 * 359.97438 * 18 8 7 36 36 H 1.08998 * 109.47159 * 59.99693 * 20 19 2 37 37 H 1.09000 * 109.47449 * 180.02562 * 20 19 2 38 38 H 1.09003 * 109.46669 * 299.99621 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6498 -1.7434 1.1220 6 8 1.7939 -0.1957 2.4470 7 6 2.4110 -0.8647 3.5783 8 6 2.1224 -0.0754 4.8569 9 6 0.6750 -0.0175 5.2724 10 1 0.0645 0.8263 4.9866 11 6 0.1301 -1.0419 6.0173 12 7 0.8828 -2.0514 6.3968 13 14 -1.6772 -0.9957 6.4875 14 1 -2.4800 -1.6677 5.4345 15 1 -1.8701 -1.6987 7.7813 16 1 -2.1180 0.4161 6.6209 17 6 2.9879 1.1545 5.1384 18 6 3.1747 -0.1192 5.9667 19 16 2.1346 -0.8552 -1.4811 20 6 1.4228 0.1514 -2.8118 21 8 3.5495 -0.7332 -1.5285 22 8 1.5478 -2.1485 -1.5284 23 1 -0.3632 0.5509 0.8676 24 1 -0.3634 0.4758 -0.9107 25 1 -0.3634 -1.0268 0.0434 26 1 3.1300 1.4424 -0.0005 27 1 1.6768 1.9562 -0.8900 28 1 1.6768 1.9563 0.8900 29 1 2.0026 -1.8708 3.6725 30 1 3.4882 -0.9229 3.4226 31 1 0.4850 -2.8066 6.8575 32 1 3.7626 1.4015 4.4125 33 1 2.5105 2.0053 5.6244 34 1 2.8201 -0.1056 6.9973 35 1 4.0723 -0.7106 5.7862 36 1 1.7893 1.1746 -2.7292 37 1 1.7150 -0.2628 -3.7768 38 1 0.3359 0.1469 -2.7291 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000744277541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:20:34 Heat of formation + Delta-G solvation = -153.989383 kcal Electronic energy + Delta-G solvation = -22288.428826 eV Core-core repulsion = 18837.799058 eV Total energy + Delta-G solvation = -3450.629768 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.107 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.81586 -38.80458 -38.16392 -37.27399 -37.03718 -36.41137 -34.04786 -30.40512 -28.88838 -28.46837 -27.39456 -25.17063 -23.05446 -22.31662 -21.27556 -19.75255 -18.80212 -18.64661 -17.92573 -17.55819 -17.25139 -16.87776 -16.64904 -16.36541 -15.72155 -15.14580 -14.59243 -14.46328 -14.17872 -14.09254 -13.94392 -13.79846 -13.65487 -13.25641 -13.21555 -13.14524 -12.97491 -12.95270 -12.83948 -12.49498 -12.41117 -12.12347 -12.01132 -11.86650 -11.77407 -11.56483 -11.30211 -10.93349 -10.49294 -10.13792 -8.16069 -6.29103 -1.16796 0.88458 1.38370 1.40932 1.41553 1.51059 1.65135 2.39712 2.77507 2.90442 3.11601 3.19584 3.48089 3.49408 3.61032 4.03272 4.10395 4.20270 4.28470 4.37036 4.52152 4.55016 4.58600 4.59663 4.66261 4.75328 4.93215 4.95475 5.14104 5.17887 5.21565 5.31875 5.48394 5.58540 5.71534 6.29197 6.45588 6.76993 7.40223 8.92420 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.022628 B = 0.004892 C = 0.004550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.084198 B = 5722.402675 C = 6152.267323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.543 4.543 3 C -0.145 4.145 4 C 0.475 3.525 5 O -0.552 6.552 6 O -0.322 6.322 7 C 0.123 3.877 8 C 0.001 3.999 9 C -0.500 4.500 10 H 0.060 0.940 11 C 0.020 3.980 12 N -0.913 5.913 13 Si 0.953 3.047 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.261 1.261 17 C -0.174 4.174 18 C -0.144 4.144 19 S 2.416 3.584 20 C -0.615 4.615 21 O -0.972 6.972 22 O -0.974 6.974 23 H 0.090 0.910 24 H 0.143 0.857 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.141 0.859 28 H 0.092 0.908 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.261 0.739 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.174 0.826 37 H 0.157 0.843 38 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.115 10.954 -18.433 21.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.629 4.629 3 C -0.202 4.202 4 C 0.319 3.681 5 O -0.445 6.445 6 O -0.236 6.236 7 C 0.049 3.951 8 C 0.001 3.999 9 C -0.538 4.538 10 H 0.078 0.922 11 C -0.180 4.180 12 N -0.550 5.550 13 Si 0.778 3.222 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.185 1.185 17 C -0.210 4.210 18 C -0.181 4.181 19 S 2.600 3.400 20 C -0.770 4.770 21 O -0.970 6.970 22 O -0.972 6.972 23 H 0.109 0.891 24 H 0.161 0.839 25 H 0.081 0.919 26 H 0.090 0.910 27 H 0.159 0.841 28 H 0.111 0.889 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.192 0.808 37 H 0.175 0.825 38 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -1.392 9.748 -18.207 20.699 hybrid contribution -0.910 -0.504 1.140 1.543 sum -2.302 9.244 -17.067 19.546 Atomic orbital electron populations 1.22022 0.84905 1.04870 1.08486 1.30504 1.10587 1.12009 1.09801 1.22045 1.02395 0.87235 1.08527 1.23258 0.75708 0.82554 0.86531 1.90743 1.40732 1.25087 1.87904 1.86481 1.67155 1.55448 1.14513 1.22687 0.94055 0.95504 0.82881 1.18877 0.93165 0.97252 0.90607 1.20642 0.94309 1.06424 1.32378 0.92152 1.25775 1.01799 0.95520 0.94894 1.70103 1.36430 1.08517 1.39998 0.85624 0.80430 0.78698 0.77414 1.20444 1.21121 1.18485 1.23022 1.02707 0.92110 1.03208 1.22459 0.99038 1.00171 0.96479 1.08193 0.75645 0.77227 0.78973 1.30128 1.16038 1.16410 1.14444 1.93509 1.29950 1.87440 1.86051 1.93517 1.79548 1.38103 1.85981 0.89076 0.83928 0.91863 0.90981 0.84126 0.88946 0.94310 0.93243 0.93030 0.89079 0.89216 0.90969 0.90792 0.80798 0.82500 0.81102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.24 71.98 0.59 -2.11 16 2 C -0.54 -13.47 0.81 -11.54 -0.01 -13.48 16 3 C -0.14 -2.36 8.11 71.98 0.58 -1.78 16 4 C 0.48 18.91 6.57 71.24 0.47 19.38 16 5 O -0.55 -26.40 15.38 24.53 0.38 -26.02 16 6 O -0.32 -14.02 9.90 -51.40 -0.51 -14.53 16 7 C 0.12 6.03 5.31 71.98 0.38 6.41 16 8 C 0.00 0.07 1.66 -52.93 -0.09 -0.01 16 9 C -0.50 -26.99 8.78 25.60 0.22 -26.76 16 10 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 11 C 0.02 1.10 5.43 84.66 0.46 1.56 16 12 N -0.91 -52.73 12.73 21.45 0.27 -52.46 16 13 Si 0.95 43.02 29.54 68.60 2.03 45.05 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 16 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 17 C -0.17 -7.21 9.96 30.62 0.30 -6.91 16 18 C -0.14 -6.72 9.23 30.62 0.28 -6.44 16 19 S 2.42 59.11 3.66 -56.49 -0.21 58.90 16 20 C -0.62 -3.48 9.72 113.37 1.10 -2.38 16 21 O -0.97 -31.60 17.85 -126.97 -2.27 -33.87 16 22 O -0.97 -33.17 17.72 -124.57 -2.21 -35.38 16 23 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 24 H 0.14 0.75 6.44 -2.39 -0.02 0.73 16 25 H 0.06 1.43 8.13 -2.38 -0.02 1.42 16 26 H 0.07 1.32 8.06 -2.39 -0.02 1.30 16 27 H 0.14 0.50 6.56 -2.39 -0.02 0.49 16 28 H 0.09 1.68 8.03 -2.39 -0.02 1.66 16 29 H 0.04 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.05 2.31 8.05 -2.39 -0.02 2.29 16 31 H 0.26 14.46 8.32 -92.71 -0.77 13.69 16 32 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 33 H 0.09 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.07 3.61 8.14 -2.39 -0.02 3.59 16 35 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.17 -0.23 6.87 -2.39 -0.02 -0.25 16 37 H 0.16 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.17 -0.10 6.81 -2.39 -0.02 -0.12 16 Total: -1.00 -85.38 333.98 2.84 -82.54 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: 1.05 Total: 8.30 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 4.30 Total: -32.52 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.27 Total: -52.46 kcal Atomic # 8 Polarization: -105.20 SS G_CDS: -4.61 Total: -109.80 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 59.11 SS G_CDS: -0.21 Total: 58.90 kcal Total: -85.38 2.84 -82.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000744277541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.450 kcal (2) G-P(sol) polarization free energy of solvation -85.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds