Wall clock time and date at job start Tue Mar 31 2020 06:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47220 * 300.00401 * 3 2 1 6 6 H 1.48503 * 109.46833 * 60.00432 * 3 2 1 7 7 C 1.38986 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99625 * 179.97438 * 7 2 1 9 9 N 1.37319 * 119.99860 * 359.72463 * 7 2 1 10 10 C 1.36518 * 126.07061 * 180.27738 * 9 7 2 11 11 C 1.35657 * 107.51135 * 179.97438 * 10 9 7 12 12 N 1.40653 * 126.08083 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99912 * 179.97438 * 12 11 10 14 14 O 1.21604 * 119.99822 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99973 * 179.97438 * 13 12 11 16 16 C 1.39930 * 119.99930 * 175.38762 * 15 13 12 17 17 C 1.38905 * 120.05109 * 214.82186 * 16 15 13 18 18 C 1.38109 * 119.97472 * 179.69740 * 17 16 15 19 19 C 1.38264 * 120.09736 * 0.59579 * 18 17 16 20 20 C 1.38492 * 120.11130 * 359.68274 * 19 18 17 21 21 F 1.35102 * 119.99096 * 180.02562 * 20 19 18 22 22 C 1.38361 * 120.02243 * 0.02562 * 20 19 18 23 23 C 1.40644 * 107.84135 * 359.97438 * 11 10 9 24 24 N 1.30917 * 108.39008 * 359.74770 * 23 11 10 25 25 H 0.96997 * 120.00237 * 359.97438 * 1 2 3 26 26 H 1.08003 * 126.24571 * 359.94878 * 10 9 7 27 27 H 0.96998 * 120.00033 * 359.97438 * 12 11 10 28 28 H 0.97005 * 120.00094 * 355.38761 * 15 13 12 29 29 H 1.07997 * 120.01860 * 359.97402 * 17 16 15 30 30 H 1.08005 * 119.94986 * 180.29704 * 18 17 16 31 31 H 1.07997 * 119.94903 * 179.70014 * 19 18 17 32 32 H 1.07994 * 120.04977 * 180.02562 * 22 20 19 33 33 H 1.07997 * 125.80628 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 -0.0006 5 1 1.8881 2.3965 -1.2124 6 1 1.8882 2.3964 1.2126 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 0.0046 10 6 1.8750 -3.6407 0.0101 11 6 0.8581 -4.5385 0.0146 12 7 0.9895 -5.9389 0.0214 13 6 -0.1097 -6.7188 0.0259 14 8 -1.2150 -6.2118 0.0235 15 7 0.0162 -8.0607 0.0319 16 6 -1.1210 -8.8696 0.1339 17 6 -1.0613 -10.0687 0.8325 18 6 -2.1863 -10.8629 0.9375 19 6 -3.3692 -10.4722 0.3378 20 6 -3.4316 -9.2802 -0.3644 21 9 -4.5889 -8.9005 -0.9490 22 6 -2.3091 -8.4780 -0.4676 23 6 -0.3510 -3.8201 0.0124 24 7 -0.0715 -2.5411 0.0123 25 1 -0.4850 0.8400 0.0004 26 1 2.9302 -3.8711 0.0104 27 1 1.8711 -6.3433 0.0230 28 1 0.8951 -8.4657 -0.0345 29 1 -0.1366 -10.3779 1.2971 30 1 -2.1406 -11.7929 1.4848 31 1 -4.2462 -11.0975 0.4174 32 1 -2.3573 -7.5481 -1.0148 33 1 -1.3416 -4.2503 0.0153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748819130.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:56 Heat of formation + Delta-G solvation = 48.113554 kcal Electronic energy + Delta-G solvation = -21501.970556 eV Core-core repulsion = 17865.785875 eV Total energy + Delta-G solvation = -3636.184681 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -48.84101 -40.60395 -39.45477 -38.26055 -34.72048 -34.28725 -33.16893 -30.64469 -30.28722 -29.58648 -27.55465 -24.91734 -23.31565 -22.62966 -21.21639 -20.63637 -19.59691 -18.53543 -17.88956 -17.17192 -16.37151 -16.12776 -15.67814 -15.53630 -15.45867 -15.02124 -14.77265 -14.20254 -13.90457 -13.58882 -13.36340 -13.12968 -12.90624 -12.51013 -12.01797 -11.71169 -11.57491 -11.38489 -11.29638 -10.93219 -10.54257 -10.51106 -10.13983 -9.53057 -9.20104 -8.83558 -8.81222 -8.27730 -8.05286 -6.72227 -6.55629 -4.22980 1.06145 1.18578 2.69643 2.91829 3.05645 3.11196 3.16302 3.55479 3.75914 3.81480 4.18483 4.40407 4.43478 4.70642 4.91297 4.93987 5.00131 5.02105 5.27674 5.45213 5.85860 6.01649 6.14803 6.18857 6.24042 6.36173 6.42851 6.72125 6.92495 6.96083 7.06619 7.22922 7.30429 7.86344 8.24997 8.28724 8.65457 8.89822 9.37386 9.66688 10.40422 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.003032 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.157044 B = 9232.755576 C = 9839.031449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.046 3.954 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.143 5.143 10 C -0.083 4.083 11 C -0.047 4.047 12 N -0.632 5.632 13 C 0.694 3.306 14 O -0.561 6.561 15 N -0.690 5.690 16 C 0.207 3.793 17 C -0.165 4.165 18 C -0.073 4.073 19 C -0.180 4.180 20 C 0.118 3.882 21 F -0.138 7.138 22 C -0.158 4.158 23 C -0.033 4.033 24 N -0.259 5.259 25 H 0.274 0.726 26 H 0.146 0.854 27 H 0.395 0.605 28 H 0.406 0.594 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.132 0.868 32 H 0.157 0.843 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.713 -18.522 0.772 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.134 0.866 9 N 0.089 4.911 10 C -0.234 4.234 11 C -0.153 4.153 12 N -0.277 5.277 13 C 0.394 3.606 14 O -0.437 6.437 15 N -0.338 5.338 16 C 0.110 3.890 17 C -0.186 4.186 18 C -0.092 4.092 19 C -0.200 4.200 20 C 0.098 3.902 21 F -0.117 7.117 22 C -0.180 4.180 23 C -0.208 4.208 24 N -0.090 5.090 25 H 0.085 0.915 26 H 0.163 0.837 27 H 0.228 0.772 28 H 0.242 0.758 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.150 0.850 32 H 0.175 0.825 33 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 0.049 -16.575 0.751 16.592 hybrid contribution 1.541 -0.505 -0.079 1.624 sum 1.590 -17.080 0.672 17.167 Atomic orbital electron populations 1.70223 1.06119 1.27888 1.35360 1.25643 0.95707 1.00269 0.95520 0.85765 0.79599 0.80295 0.78479 1.18715 1.19920 1.19921 1.19908 0.91659 0.80516 1.53450 0.86580 1.44553 1.04036 1.03253 1.39250 1.21178 0.96720 0.85337 1.20203 1.17018 0.94435 0.79866 1.23961 1.41495 1.06536 1.04544 1.75115 1.15769 0.85207 0.80216 0.79369 1.90841 1.24472 1.72011 1.56340 1.42609 1.08485 1.04885 1.77854 1.17161 0.86737 0.90452 0.94655 1.20923 1.00058 0.95796 1.01811 1.20700 0.91332 0.99236 0.97914 1.21066 0.99967 0.96797 1.02163 1.17530 0.82013 0.94359 0.96305 1.91505 1.46739 1.91309 1.82128 1.21383 0.91620 1.02181 1.02799 1.24111 0.98048 0.90675 1.07990 1.78274 0.90107 1.14988 1.25652 0.91500 0.83695 0.77177 0.75813 0.85187 0.84855 0.84986 0.82546 0.80663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.55 11.81 55.49 0.66 -20.89 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.08 16 3 Si 0.93 18.89 29.55 -169.99 -5.02 13.87 16 4 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 5 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.32 -8.51 10.25 -14.82 -0.15 -8.66 16 8 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 9 N -0.14 -3.91 3.74 -11.41 -0.04 -3.95 16 10 C -0.08 -1.93 11.49 -16.39 -0.19 -2.12 16 11 C -0.05 -1.07 6.90 -83.82 -0.58 -1.64 16 12 N -0.63 -10.76 5.47 -14.35 -0.08 -10.84 16 13 C 0.69 11.91 8.38 -86.92 -0.73 11.18 16 14 O -0.56 -11.94 10.92 5.27 0.06 -11.88 16 15 N -0.69 -8.43 5.34 -14.23 -0.08 -8.51 16 16 C 0.21 2.61 6.30 -83.70 -0.53 2.09 16 17 C -0.16 -1.58 9.96 -39.38 -0.39 -1.97 16 18 C -0.07 -0.64 10.04 -39.62 -0.40 -1.04 16 19 C -0.18 -1.87 10.02 -39.48 -0.40 -2.27 16 20 C 0.12 1.58 7.30 -39.44 -0.29 1.29 16 21 F -0.14 -2.00 17.27 2.25 0.04 -1.96 16 22 C -0.16 -2.34 8.67 -39.33 -0.34 -2.68 16 23 C -0.03 -0.86 10.85 -17.03 -0.18 -1.04 16 24 N -0.26 -7.55 10.40 30.80 0.32 -7.23 16 25 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 26 H 0.15 2.76 8.06 -52.48 -0.42 2.34 16 27 H 0.40 4.93 8.84 -40.82 -0.36 4.57 16 28 H 0.41 3.27 8.84 -40.82 -0.36 2.91 16 29 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 30 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 31 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 32 H 0.16 2.72 6.22 -52.49 -0.33 2.39 16 33 H 0.18 4.62 5.92 -52.49 -0.31 4.31 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -34.04 299.68 -6.50 -40.53 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -2.60 Total: 12.14 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -4.27 Total: -5.79 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: 0.78 Total: -51.42 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.06 Total: -11.88 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 18.89 SS G_CDS: -5.02 Total: 13.87 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -34.04 -6.50 -40.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748819130.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.648 kcal (2) G-P(sol) polarization free energy of solvation -34.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds