Wall clock time and date at job start Tue Mar 31 2020 06:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31293 * 1 3 3 Si 1.86801 * 119.99994 * 2 1 4 4 H 1.48497 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47220 * 300.00401 * 3 2 1 6 6 H 1.48503 * 109.46833 * 60.00432 * 3 2 1 7 7 C 1.38986 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99625 * 179.97438 * 7 2 1 9 9 N 1.37319 * 119.99860 * 359.72463 * 7 2 1 10 10 C 1.36518 * 126.07061 * 180.27738 * 9 7 2 11 11 C 1.35657 * 107.51135 * 179.97438 * 10 9 7 12 12 N 1.40653 * 126.08083 * 180.02562 * 11 10 9 13 13 C 1.34778 * 119.99912 * 179.97438 * 12 11 10 14 14 O 1.21604 * 119.99822 * 0.02562 * 13 12 11 15 15 N 1.34774 * 119.99973 * 179.97438 * 13 12 11 16 16 C 1.39930 * 119.99930 * 175.38762 * 15 13 12 17 17 C 1.38905 * 120.05109 * 214.82186 * 16 15 13 18 18 C 1.38109 * 119.97472 * 179.69740 * 17 16 15 19 19 C 1.38264 * 120.09736 * 0.59579 * 18 17 16 20 20 C 1.38492 * 120.11130 * 359.68274 * 19 18 17 21 21 F 1.35102 * 119.99096 * 180.02562 * 20 19 18 22 22 C 1.38361 * 120.02243 * 0.02562 * 20 19 18 23 23 C 1.40644 * 107.84135 * 359.97438 * 11 10 9 24 24 N 1.30917 * 108.39008 * 359.74770 * 23 11 10 25 25 H 0.96997 * 120.00237 * 359.97438 * 1 2 3 26 26 H 1.08003 * 126.24571 * 359.94878 * 10 9 7 27 27 H 0.96998 * 120.00033 * 359.97438 * 12 11 10 28 28 H 0.97005 * 120.00094 * 355.38761 * 15 13 12 29 29 H 1.07997 * 120.01860 * 359.97402 * 17 16 15 30 30 H 1.08005 * 119.94986 * 180.29704 * 18 17 16 31 31 H 1.07997 * 119.94903 * 179.70014 * 19 18 17 32 32 H 1.07994 * 120.04977 * 180.02562 * 22 20 19 33 33 H 1.07997 * 125.80628 * 180.02562 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2469 1.6177 0.0000 4 1 3.7069 1.3464 -0.0006 5 1 1.8881 2.3965 -1.2124 6 1 1.8882 2.3964 1.2126 7 6 2.0079 -1.2036 -0.0005 8 1 3.0879 -1.2036 -0.0010 9 7 1.3213 -2.3929 0.0046 10 6 1.8750 -3.6407 0.0101 11 6 0.8581 -4.5385 0.0146 12 7 0.9895 -5.9389 0.0214 13 6 -0.1097 -6.7188 0.0259 14 8 -1.2150 -6.2118 0.0235 15 7 0.0162 -8.0607 0.0319 16 6 -1.1210 -8.8696 0.1339 17 6 -1.0613 -10.0687 0.8325 18 6 -2.1863 -10.8629 0.9375 19 6 -3.3692 -10.4722 0.3378 20 6 -3.4316 -9.2802 -0.3644 21 9 -4.5889 -8.9005 -0.9490 22 6 -2.3091 -8.4780 -0.4676 23 6 -0.3510 -3.8201 0.0124 24 7 -0.0715 -2.5411 0.0123 25 1 -0.4850 0.8400 0.0004 26 1 2.9302 -3.8711 0.0104 27 1 1.8711 -6.3433 0.0230 28 1 0.8951 -8.4657 -0.0345 29 1 -0.1366 -10.3779 1.2971 30 1 -2.1406 -11.7929 1.4848 31 1 -4.2462 -11.0975 0.4174 32 1 -2.3573 -7.5481 -1.0148 33 1 -1.3416 -4.2503 0.0153 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000748819130.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:53 Heat of formation + Delta-G solvation = 23.993801 kcal Electronic energy + Delta-G solvation = -21503.016467 eV Core-core repulsion = 17865.785875 eV Total energy + Delta-G solvation = -3637.230592 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 2.98 seconds Orbital eigenvalues (eV) -49.90049 -42.00686 -41.10949 -39.43045 -36.08198 -35.75209 -34.95422 -32.23465 -31.55596 -30.74118 -29.24910 -26.79230 -24.42144 -23.62255 -22.84927 -22.14590 -21.34302 -19.97847 -19.04004 -18.82726 -17.45208 -17.33698 -17.12012 -16.92630 -16.61308 -16.35406 -16.16978 -15.66971 -15.37967 -15.18427 -14.78241 -14.56372 -14.21274 -13.50669 -13.47613 -13.29856 -12.93805 -12.85727 -12.79094 -12.45926 -12.02055 -11.95870 -11.43149 -11.05376 -10.99402 -10.79925 -10.09355 -9.77989 -9.25772 -8.49563 -8.45763 -6.22926 0.15553 0.27498 1.27089 1.39080 1.48976 1.60261 1.67212 1.96193 2.14730 2.53217 2.74671 2.79153 3.10521 3.21876 3.46671 3.91693 4.11332 4.19689 4.38788 4.43934 4.54934 4.61394 4.95332 5.02492 5.10283 5.17576 5.26734 5.30129 5.33937 5.40481 5.52430 5.94649 6.00382 6.04288 6.34040 6.74838 7.04738 7.47048 7.52640 7.69951 8.53869 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.039034 B = 0.003032 C = 0.002845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.157044 B = 9232.755576 C = 9839.031449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C -0.009 4.009 3 Si 1.020 2.980 4 H -0.239 1.239 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.352 4.352 8 H 0.143 0.857 9 N -0.170 5.170 10 C -0.077 4.077 11 C -0.028 4.028 12 N -0.621 5.621 13 C 0.692 3.308 14 O -0.606 6.606 15 N -0.665 5.665 16 C 0.184 3.816 17 C -0.145 4.145 18 C -0.060 4.060 19 C -0.171 4.171 20 C 0.088 3.912 21 F -0.155 7.155 22 C -0.189 4.189 23 C -0.061 4.061 24 N -0.311 5.311 25 H 0.275 0.725 26 H 0.192 0.808 27 H 0.421 0.579 28 H 0.430 0.570 29 H 0.170 0.830 30 H 0.180 0.820 31 H 0.157 0.843 32 H 0.116 0.884 33 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.632 -21.307 1.936 21.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.161 1.161 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.483 4.483 8 H 0.160 0.840 9 N 0.061 4.939 10 C -0.227 4.227 11 C -0.134 4.134 12 N -0.269 5.269 13 C 0.393 3.607 14 O -0.485 6.485 15 N -0.315 5.315 16 C 0.088 3.912 17 C -0.165 4.165 18 C -0.079 4.079 19 C -0.190 4.190 20 C 0.069 3.931 21 F -0.134 7.134 22 C -0.211 4.211 23 C -0.237 4.237 24 N -0.143 5.143 25 H 0.085 0.915 26 H 0.209 0.791 27 H 0.259 0.741 28 H 0.270 0.730 29 H 0.187 0.813 30 H 0.198 0.802 31 H 0.175 0.825 32 H 0.134 0.866 33 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 3.026 -19.468 1.912 19.794 hybrid contribution 0.581 0.086 -0.426 0.726 sum 3.607 -19.381 1.486 19.770 Atomic orbital electron populations 1.70413 1.08488 1.28965 1.37598 1.26896 0.96457 1.04413 0.94213 0.84528 0.79122 0.74396 0.78088 1.16142 1.19934 1.19895 1.20665 0.92986 0.80804 1.53876 0.83962 1.44850 1.03547 1.04862 1.40622 1.21943 0.98778 0.83984 1.18013 1.17026 0.92797 0.82401 1.21223 1.41223 1.08052 1.02345 1.75299 1.16002 0.84336 0.81725 0.78675 1.90841 1.26376 1.73400 1.57877 1.42214 1.09830 1.02807 1.76674 1.17407 0.85923 0.91846 0.96011 1.21360 1.01967 0.93613 0.99571 1.21278 0.89864 1.00249 0.96466 1.21447 1.01830 0.95262 1.00454 1.17863 0.81285 0.95926 0.98065 1.91454 1.47489 1.91708 1.82701 1.21237 0.93782 1.01561 1.04516 1.24120 0.99048 0.90953 1.09543 1.78168 0.92173 1.16485 1.27452 0.91501 0.79119 0.74129 0.73013 0.81256 0.80243 0.82541 0.86622 0.81937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -48.37 11.81 21.66 0.26 -48.11 16 2 C -0.01 -0.45 5.50 84.95 0.47 0.02 16 3 Si 1.02 38.76 29.55 68.60 2.03 40.79 16 4 H -0.24 -8.03 7.11 99.48 0.71 -7.32 16 5 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.27 -10.27 7.11 99.48 0.71 -9.57 16 7 C -0.35 -18.61 10.25 84.01 0.86 -17.75 16 8 H 0.14 6.45 7.83 -2.91 -0.02 6.43 16 9 N -0.17 -9.42 3.74 -190.01 -0.71 -10.13 16 10 C -0.08 -3.48 11.49 83.37 0.96 -2.52 16 11 C -0.03 -1.26 6.90 37.71 0.26 -1.00 16 12 N -0.62 -20.42 5.47 -317.58 -1.74 -22.15 16 13 C 0.69 23.75 8.38 179.05 1.50 25.25 16 14 O -0.61 -27.28 10.92 -4.04 -0.04 -27.32 16 15 N -0.67 -15.15 5.34 -317.19 -1.69 -16.84 16 16 C 0.18 4.41 6.30 38.14 0.24 4.65 16 17 C -0.14 -2.15 9.96 22.40 0.22 -1.93 16 18 C -0.06 -0.77 10.04 22.25 0.22 -0.55 16 19 C -0.17 -3.12 10.02 22.34 0.22 -2.89 16 20 C 0.09 2.42 7.30 22.36 0.16 2.58 16 21 F -0.15 -4.77 17.27 44.97 0.78 -4.00 16 22 C -0.19 -5.87 8.67 22.43 0.19 -5.67 16 23 C -0.06 -3.40 10.85 85.42 0.93 -2.47 16 24 N -0.31 -19.01 10.40 -56.47 -0.59 -19.60 16 25 H 0.28 14.81 8.31 -92.71 -0.77 14.04 16 26 H 0.19 6.62 8.06 -2.91 -0.02 6.60 16 27 H 0.42 9.26 8.84 -92.71 -0.82 8.44 16 28 H 0.43 5.48 8.84 -92.70 -0.82 4.66 16 29 H 0.17 1.23 8.06 -2.91 -0.02 1.20 16 30 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 31 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 32 H 0.12 4.49 6.22 -2.91 -0.02 4.48 16 33 H 0.16 9.29 5.92 -2.91 -0.02 9.27 16 Total: -1.00 -82.34 299.68 4.09 -78.25 By element: Atomic # 1 Polarization: 31.84 SS G_CDS: -0.44 Total: 31.40 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 6.24 Total: -2.28 kcal Atomic # 7 Polarization: -112.36 SS G_CDS: -4.47 Total: -116.84 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.04 Total: -27.32 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.78 Total: -4.00 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 2.03 Total: 40.79 kcal Total: -82.34 4.09 -78.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748819130.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.244 kcal (2) G-P(sol) polarization free energy of solvation -82.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.98 seconds