Wall clock time and date at job start Tue Mar 31 2020 08:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86805 * 120.00273 * 2 1 4 4 H 1.48498 * 109.47200 * 239.99949 * 3 2 1 5 5 H 1.48498 * 109.46669 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.99964 * 3 2 1 7 7 C 1.38955 * 120.00058 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99918 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99464 * 0.02562 * 7 2 1 10 10 C 1.34784 * 119.99735 * 179.97438 * 9 7 2 11 11 O 1.21297 * 119.99813 * 359.72559 * 10 9 7 12 12 C 1.50694 * 119.99988 * 179.72439 * 10 9 7 13 13 N 1.46497 * 109.47115 * 180.02562 * 12 10 9 14 14 C 1.40148 * 120.34567 * 89.99741 * 13 12 10 15 15 C 1.38535 * 120.63816 * 48.67997 * 14 13 12 16 16 C 1.38272 * 119.84129 * 180.18841 * 15 14 13 17 17 C 1.38280 * 120.17051 * 0.03420 * 16 15 14 18 18 C 1.38290 * 120.25824 * 359.90794 * 17 16 15 19 19 C 1.38459 * 119.92900 * 359.97438 * 18 17 16 20 20 O 1.35914 * 120.47636 * 180.55066 * 19 18 17 21 21 C 1.42525 * 117.17588 * 104.43875 * 20 19 18 22 22 C 1.52727 * 110.44423 * 43.75159 * 21 20 19 23 23 C 1.35185 * 120.34405 * 269.72426 * 13 12 10 24 24 O 1.21303 * 120.15732 * 3.58983 * 23 13 12 25 25 H 0.97000 * 119.99610 * 359.97438 * 1 2 3 26 26 H 0.97000 * 120.00868 * 359.72070 * 9 7 2 27 27 H 1.08998 * 109.47224 * 299.99701 * 12 10 9 28 28 H 1.09002 * 109.47054 * 60.00213 * 12 10 9 29 29 H 1.08000 * 120.07838 * 0.21773 * 15 14 13 30 30 H 1.08005 * 119.91517 * 180.02562 * 16 15 14 31 31 H 1.07998 * 119.87235 * 179.87972 * 17 16 15 32 32 H 1.08005 * 120.03696 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.31045 * 164.04941 * 21 20 19 34 34 H 1.08994 * 109.31257 * 283.45388 * 21 20 19 35 35 H 1.08997 * 109.36641 * 164.12789 * 22 21 20 36 36 H 1.08999 * 109.36608 * 283.75189 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7464 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9972 -3.5579 0.0005 11 8 3.2101 -3.5579 -0.0045 12 6 1.2436 -4.8629 0.0068 13 7 2.1956 -5.9764 0.0061 14 6 2.6603 -6.5114 1.2153 15 6 1.7741 -6.8453 2.2264 16 6 2.2510 -7.3684 3.4143 17 6 3.6088 -7.5579 3.5947 18 6 4.4982 -7.2277 2.5886 19 6 4.0287 -6.7056 1.3953 20 8 4.8920 -6.3876 0.3949 21 6 4.9548 -7.2762 -0.7177 22 6 3.5499 -7.6960 -1.1451 23 6 2.6307 -6.5023 -1.1608 24 8 2.2858 -6.0130 -2.2158 25 1 -0.4849 0.8401 0.0004 26 1 0.3533 -2.3907 0.0043 27 1 0.6207 -4.9185 0.8995 28 1 0.6133 -4.9228 -0.8804 29 1 0.7134 -6.6978 2.0871 30 1 1.5611 -7.6295 4.2032 31 1 3.9761 -7.9650 4.5252 32 1 5.5581 -7.3768 2.7336 33 1 5.4507 -6.7769 -1.5502 34 1 5.5266 -8.1616 -0.4401 35 1 3.5911 -8.1328 -2.1429 36 1 3.1649 -8.4363 -0.4439 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749608985.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:29:29 Heat of formation + Delta-G solvation = -90.711412 kcal Electronic energy + Delta-G solvation = -23430.402800 eV Core-core repulsion = 19879.365771 eV Total energy + Delta-G solvation = -3551.037030 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.110 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39082 -40.25981 -39.67230 -38.51485 -36.58556 -35.88755 -33.39297 -33.01631 -31.33478 -31.00459 -28.82328 -26.72195 -25.61198 -23.69597 -22.92123 -21.88744 -20.83161 -19.98442 -18.53419 -18.20413 -18.10336 -18.01435 -17.24331 -16.67499 -16.51566 -15.93851 -15.72570 -15.68124 -15.37765 -15.22699 -14.91909 -14.51541 -14.19274 -13.90444 -13.56207 -13.21177 -13.18904 -12.90586 -12.75881 -12.60677 -12.49869 -12.16802 -12.15441 -11.66998 -11.56325 -11.00227 -10.95423 -10.34173 -10.07459 -9.71140 -9.08514 -8.50814 -6.00656 0.12633 0.30907 1.27707 1.35312 1.37772 1.49321 1.75950 1.95142 2.27364 2.47082 2.84730 3.13136 3.16924 3.32842 3.74947 3.85916 3.93198 4.06196 4.11363 4.23082 4.29610 4.38088 4.46118 4.47445 4.51582 4.61412 4.67766 4.86863 5.10980 5.33986 5.35007 5.49982 5.53680 5.82201 5.91962 6.15790 6.51955 6.55303 6.88237 7.06389 7.46172 8.02544 8.65871 Molecular weight = 290.11amu Principal moments of inertia in cm(-1) A = 0.019308 B = 0.004882 C = 0.004566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.818593 B = 5733.564702 C = 6130.567165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.009 4.009 3 Si 0.994 3.006 4 H -0.276 1.276 5 H -0.264 1.264 6 H -0.270 1.270 7 C -0.337 4.337 8 H 0.073 0.927 9 N -0.567 5.567 10 C 0.420 3.580 11 O -0.616 6.616 12 C 0.110 3.890 13 N -0.538 5.538 14 C 0.089 3.911 15 C -0.125 4.125 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.125 4.125 19 C 0.069 3.931 20 O -0.351 6.351 21 C 0.070 3.930 22 C -0.166 4.166 23 C 0.514 3.486 24 O -0.573 6.573 25 H 0.280 0.720 26 H 0.397 0.603 27 H 0.132 0.868 28 H 0.107 0.893 29 H 0.145 0.855 30 H 0.166 0.834 31 H 0.166 0.834 32 H 0.149 0.851 33 H 0.096 0.904 34 H 0.111 0.889 35 H 0.135 0.865 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.002 -20.236 7.753 21.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.201 1.201 5 H -0.189 1.189 6 H -0.195 1.195 7 C -0.466 4.466 8 H 0.091 0.909 9 N -0.205 5.205 10 C 0.206 3.794 11 O -0.502 6.502 12 C -0.016 4.016 13 N -0.263 5.263 14 C -0.003 4.003 15 C -0.144 4.144 16 C -0.121 4.121 17 C -0.122 4.122 18 C -0.143 4.143 19 C 0.024 3.976 20 O -0.269 6.269 21 C -0.004 4.004 22 C -0.206 4.206 23 C 0.305 3.695 24 O -0.452 6.452 25 H 0.089 0.911 26 H 0.231 0.769 27 H 0.150 0.850 28 H 0.125 0.875 29 H 0.163 0.837 30 H 0.183 0.817 31 H 0.184 0.816 32 H 0.166 0.834 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.573 -19.650 7.112 21.201 hybrid contribution -0.299 1.260 -0.576 1.418 sum 3.274 -18.390 6.536 19.790 Atomic orbital electron populations 1.69657 1.06751 1.29536 1.49768 1.26049 0.96614 1.02327 0.95972 0.84988 0.77841 0.76584 0.78881 1.20097 1.18851 1.19525 1.19578 0.92510 0.84038 1.50498 0.90868 1.41850 1.09268 1.04510 1.64831 1.21201 0.88699 0.86514 0.82978 1.90542 1.15598 1.87766 1.56338 1.21303 0.91026 0.83189 1.06086 1.45148 1.44591 1.31368 1.05181 1.18536 0.92889 1.00892 0.87989 1.21261 0.99841 0.99869 0.93477 1.21466 0.96570 0.97664 0.96397 1.21497 0.92725 0.98732 0.99208 1.21434 1.02068 0.98451 0.92375 1.19105 0.86891 1.00729 0.90827 1.86068 1.60459 1.50463 1.29872 1.22958 0.94569 0.95180 0.87668 1.22466 0.95032 0.95186 1.07928 1.21502 0.80359 0.85377 0.82269 1.90687 1.58887 1.63964 1.31686 0.91073 0.76862 0.85024 0.87512 0.83700 0.81662 0.81607 0.83364 0.88547 0.87119 0.84726 0.86416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.94 13.05 21.66 0.28 -50.66 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 0.99 44.72 29.55 68.60 2.03 46.75 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 6 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 7 C -0.34 -20.30 9.68 84.04 0.81 -19.49 16 8 H 0.07 4.74 7.16 -2.91 -0.02 4.72 16 9 N -0.57 -31.26 5.29 -306.97 -1.62 -32.89 16 10 C 0.42 22.14 7.85 87.65 0.69 22.83 16 11 O -0.62 -37.82 16.01 -3.08 -0.05 -37.87 16 12 C 0.11 4.33 5.82 85.63 0.50 4.83 16 13 N -0.54 -19.88 2.07 -634.38 -1.32 -21.20 16 14 C 0.09 2.76 5.02 38.16 0.19 2.95 16 15 C -0.12 -2.87 9.31 22.35 0.21 -2.66 16 16 C -0.10 -1.71 10.04 22.29 0.22 -1.49 16 17 C -0.10 -1.68 10.04 22.29 0.22 -1.46 16 18 C -0.12 -2.76 9.99 22.33 0.22 -2.54 16 19 C 0.07 2.12 5.44 22.60 0.12 2.24 16 20 O -0.35 -12.26 9.91 -92.58 -0.92 -13.18 16 21 C 0.07 1.76 6.94 71.89 0.50 2.26 16 22 C -0.17 -4.13 5.44 29.75 0.16 -3.97 16 23 C 0.51 19.29 6.84 87.58 0.60 19.89 16 24 O -0.57 -26.37 16.77 -3.10 -0.05 -26.42 16 25 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 26 H 0.40 20.52 7.90 -92.71 -0.73 19.79 16 27 H 0.13 4.11 6.93 -2.39 -0.02 4.10 16 28 H 0.11 4.11 7.51 -2.39 -0.02 4.10 16 29 H 0.15 2.79 7.42 -2.91 -0.02 2.77 16 30 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 32 H 0.15 2.69 8.06 -2.91 -0.02 2.67 16 33 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.13 2.70 8.13 -2.39 -0.02 2.68 16 36 H 0.12 2.29 7.51 -2.39 -0.02 2.27 16 Total: -1.00 -85.06 313.20 3.67 -81.39 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.39 Total: 30.73 kcal Atomic # 6 Polarization: 18.42 SS G_CDS: 4.92 Total: 23.34 kcal Atomic # 7 Polarization: -102.08 SS G_CDS: -2.66 Total: -104.74 kcal Atomic # 8 Polarization: -76.45 SS G_CDS: -1.02 Total: -77.47 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -85.06 3.67 -81.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749608985.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.321 kcal (2) G-P(sol) polarization free energy of solvation -85.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds