Wall clock time and date at job start Tue Mar 31 2020 06:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35245 * 107.85767 * 179.83915 * 11 10 9 13 13 C 1.40403 * 107.86997 * 0.42139 * 12 11 10 14 14 N 1.40193 * 125.97737 * 179.71791 * 13 12 11 15 15 C 1.34786 * 119.99510 * 359.97438 * 14 13 12 16 16 O 1.21591 * 120.00152 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99447 * 179.97438 * 15 14 13 18 18 O 1.41599 * 119.99448 * 179.97438 * 17 15 14 19 19 C 1.42909 * 113.99851 * 180.02562 * 18 17 15 20 20 C 1.52995 * 109.46957 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47316 * 300.00034 * 20 19 18 22 22 F 1.39905 * 109.47354 * 60.00464 * 20 19 18 23 23 N 1.31216 * 108.05158 * 359.73849 * 13 12 11 24 24 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 26 26 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 27 27 H 1.07995 * 126.06936 * 359.97438 * 11 10 9 28 28 H 1.07997 * 126.06688 * 180.12295 * 12 11 10 29 29 H 0.96996 * 120.00659 * 180.02562 * 14 13 12 30 30 H 0.97000 * 120.00294 * 0.02562 * 17 15 14 31 31 H 1.08993 * 109.47130 * 300.00821 * 19 18 17 32 32 H 1.09004 * 109.46456 * 60.00655 * 19 18 17 33 33 H 1.09003 * 109.47036 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0538 -4.4045 -0.5776 13 6 4.2968 -4.6706 0.5746 14 7 4.2280 -5.8974 1.2496 15 6 4.9307 -6.9553 0.7981 16 8 5.6245 -6.8455 -0.1944 17 7 4.8649 -8.1345 1.4474 18 8 5.6027 -9.2460 0.9727 19 6 5.4389 -10.4298 1.7563 20 6 6.2772 -11.5595 1.1549 21 9 5.8555 -11.8061 -0.1561 22 9 7.6258 -11.1873 1.1488 23 7 3.6647 -3.5705 0.9089 24 1 -0.4850 0.8400 0.0004 25 1 3.8711 -0.6780 -0.9023 26 1 3.8785 -0.6824 0.8776 27 1 5.2837 -2.6016 -1.7660 28 1 5.6850 -5.1079 -1.1001 29 1 3.6743 -5.9851 2.0411 30 1 4.3117 -8.2220 2.2393 31 1 5.7677 -10.2378 2.7776 32 1 4.3881 -10.7196 1.7613 33 1 6.1519 -12.4626 1.7524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000759988708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:33 Heat of formation + Delta-G solvation = -23.074531 kcal Electronic energy + Delta-G solvation = -21931.185853 eV Core-core repulsion = 17861.145000 eV Total energy + Delta-G solvation = -4070.040853 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -49.38248 -47.41324 -40.79078 -39.61039 -37.79073 -34.78341 -33.47801 -32.72049 -31.16405 -29.77931 -29.31971 -27.04410 -23.64953 -23.06620 -22.01907 -20.55763 -20.00432 -18.97110 -18.28634 -17.94204 -17.38149 -16.99146 -16.82354 -16.38706 -16.05186 -15.26867 -15.04893 -14.71253 -14.37562 -14.16735 -13.85579 -13.74941 -13.62337 -13.07388 -12.81172 -12.57088 -12.36030 -12.17293 -11.78947 -11.71235 -11.16928 -10.89483 -10.54296 -10.20520 -10.01720 -9.81461 -9.53358 -9.29377 -8.76540 -8.20366 -7.52124 -6.23379 -4.25653 1.05174 2.54996 2.96751 3.02075 3.16721 3.21789 3.23030 3.28396 3.58376 3.73165 3.74666 3.85894 4.11367 4.23156 4.36280 4.63734 4.75087 5.04639 5.37239 5.67187 6.03675 6.24507 6.31244 6.44601 6.49648 6.69128 6.85713 7.27099 7.35947 7.74469 7.82364 8.33616 8.47492 8.55160 8.86421 9.31661 10.89321 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.050490 B = 0.002521 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.428827 B =11102.558795 C =11331.443765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.076 3.924 3 Si 0.875 3.125 4 H -0.272 1.272 5 H -0.264 1.264 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.232 3.768 10 N -0.320 5.320 11 C 0.054 3.946 12 C -0.282 4.282 13 C 0.280 3.720 14 N -0.633 5.633 15 C 0.731 3.269 16 O -0.543 6.543 17 N -0.611 5.611 18 O -0.111 6.111 19 C -0.026 4.026 20 C 0.282 3.718 21 F -0.195 7.195 22 F -0.195 7.195 23 N -0.297 5.297 24 H 0.268 0.732 25 H 0.054 0.946 26 H 0.038 0.962 27 H 0.170 0.830 28 H 0.164 0.836 29 H 0.409 0.591 30 H 0.406 0.594 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.815 -21.047 6.465 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.128 4.128 3 Si 0.701 3.299 4 H -0.197 1.197 5 H -0.189 1.189 6 H -0.206 1.206 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.113 3.887 10 N -0.101 5.101 11 C -0.096 4.096 12 C -0.313 4.313 13 C 0.026 3.974 14 N -0.286 5.286 15 C 0.431 3.569 16 O -0.415 6.415 17 N -0.318 5.318 18 O -0.113 6.113 19 C -0.105 4.105 20 C 0.227 3.773 21 F -0.176 7.176 22 F -0.176 7.176 23 N -0.128 5.128 24 H 0.078 0.922 25 H 0.072 0.928 26 H 0.056 0.944 27 H 0.187 0.813 28 H 0.181 0.819 29 H 0.244 0.756 30 H 0.246 0.754 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 10.619 -20.173 6.148 23.612 hybrid contribution 0.176 0.209 0.395 0.480 sum 10.795 -19.964 6.543 23.620 Atomic orbital electron populations 1.69873 1.06165 1.27295 1.49217 1.24836 0.94874 0.98815 0.94271 0.86885 0.80257 0.83795 0.78981 1.19727 1.18918 1.20616 1.21117 0.87809 0.95707 1.52612 0.89621 1.20061 0.97433 0.72958 0.98252 1.48607 1.32965 1.10103 1.18465 1.22555 0.95904 0.94601 0.96491 1.21562 1.11469 0.96825 1.01442 1.18663 0.99022 0.85352 0.94360 1.40959 1.49421 1.06706 1.31558 1.14894 0.80954 0.78278 0.82818 1.90916 1.42992 1.81907 1.25690 1.45915 1.50521 1.03221 1.32130 1.90696 1.62458 1.12075 1.46108 1.24285 1.02309 0.86075 0.97806 1.21893 0.76816 0.96874 0.81722 1.93063 1.89609 1.95229 1.39687 1.93060 1.34857 1.93116 1.96602 1.77389 1.23755 0.95360 1.16267 0.92188 0.92822 0.94438 0.81267 0.81884 0.75558 0.75350 0.88679 0.88628 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.48 13.96 55.43 0.77 -25.70 16 2 C 0.08 2.11 5.47 -17.82 -0.10 2.01 16 3 Si 0.87 20.04 27.47 -169.99 -4.67 15.37 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.53 -14.96 9.79 -34.44 -0.34 -15.30 16 8 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 9 C 0.23 5.45 5.33 -5.20 -0.03 5.42 16 10 N -0.32 -7.18 3.67 -62.56 -0.23 -7.41 16 11 C 0.05 1.04 11.44 -17.24 -0.20 0.84 16 12 C -0.28 -5.55 9.61 -39.83 -0.38 -5.93 16 13 C 0.28 5.53 8.11 -154.36 -1.25 4.27 16 14 N -0.63 -9.49 5.46 -15.50 -0.08 -9.57 16 15 C 0.73 11.12 8.68 -86.91 -0.75 10.37 16 16 O -0.54 -10.61 13.88 -12.86 -0.18 -10.78 16 17 N -0.61 -6.46 6.39 27.64 0.18 -6.28 16 18 O -0.11 -1.27 11.00 -29.62 -0.33 -1.59 16 19 C -0.03 -0.14 6.45 37.15 0.24 0.10 16 20 C 0.28 1.58 5.63 37.15 0.21 1.79 16 21 F -0.19 -1.80 17.28 2.25 0.04 -1.76 16 22 F -0.20 -1.77 17.28 2.25 0.04 -1.73 16 23 N -0.30 -6.67 12.42 31.44 0.39 -6.28 16 24 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 25 H 0.05 1.16 7.12 -51.93 -0.37 0.79 16 26 H 0.04 0.86 7.57 -51.93 -0.39 0.47 16 27 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 28 H 0.16 3.21 5.91 -52.49 -0.31 2.90 16 29 H 0.41 4.63 8.84 -40.82 -0.36 4.27 16 30 H 0.41 2.36 8.56 -40.82 -0.35 2.01 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.14 0.06 8.14 -51.93 -0.42 -0.36 16 LS Contribution 306.89 15.07 4.62 4.62 Total: -1.00 -38.18 306.89 -5.11 -43.29 By element: Atomic # 1 Polarization: 7.32 SS G_CDS: -3.06 Total: 4.26 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -2.60 Total: 3.58 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 1.03 Total: -55.24 kcal Atomic # 8 Polarization: -11.87 SS G_CDS: -0.50 Total: -12.38 kcal Atomic # 9 Polarization: -3.57 SS G_CDS: 0.08 Total: -3.49 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.67 Total: 15.37 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -38.18 -5.11 -43.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759988708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.213 kcal (2) G-P(sol) polarization free energy of solvation -38.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds