Wall clock time and date at job start Tue Mar 31 2020 06:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.08002 * 120.00482 * 359.72746 * 7 2 1 9 9 C 1.50702 * 120.00072 * 179.72119 * 7 2 1 10 10 N 1.46495 * 109.47571 * 180.02562 * 9 7 2 11 11 C 1.34965 * 125.97869 * 124.71943 * 10 9 7 12 12 C 1.35245 * 107.85767 * 179.83915 * 11 10 9 13 13 C 1.40403 * 107.86997 * 0.42139 * 12 11 10 14 14 N 1.40193 * 125.97737 * 179.71791 * 13 12 11 15 15 C 1.34786 * 119.99510 * 359.97438 * 14 13 12 16 16 O 1.21591 * 120.00152 * 0.02562 * 15 14 13 17 17 N 1.34774 * 119.99447 * 179.97438 * 15 14 13 18 18 O 1.41599 * 119.99448 * 179.97438 * 17 15 14 19 19 C 1.42909 * 113.99851 * 180.02562 * 18 17 15 20 20 C 1.52995 * 109.46957 * 180.02562 * 19 18 17 21 21 F 1.39901 * 109.47316 * 300.00034 * 20 19 18 22 22 F 1.39905 * 109.47354 * 60.00464 * 20 19 18 23 23 N 1.31216 * 108.05158 * 359.73849 * 13 12 11 24 24 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47047 * 300.00890 * 9 7 2 26 26 H 1.09001 * 109.46702 * 60.00291 * 9 7 2 27 27 H 1.07995 * 126.06936 * 359.97438 * 11 10 9 28 28 H 1.07997 * 126.06688 * 180.12295 * 12 11 10 29 29 H 0.96996 * 120.00659 * 180.02562 * 14 13 12 30 30 H 0.97000 * 120.00294 * 0.02562 * 17 15 14 31 31 H 1.08993 * 109.47130 * 300.00821 * 19 18 17 32 32 H 1.09004 * 109.46456 * 60.00655 * 19 18 17 33 33 H 1.09003 * 109.47036 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 1 1.4645 -2.1294 -0.0058 9 6 3.5115 -1.1940 -0.0121 10 7 3.9999 -2.5752 -0.0181 11 6 4.8469 -3.1128 -0.9209 12 6 5.0538 -4.4045 -0.5776 13 6 4.2968 -4.6706 0.5746 14 7 4.2280 -5.8974 1.2496 15 6 4.9307 -6.9553 0.7981 16 8 5.6245 -6.8455 -0.1944 17 7 4.8649 -8.1345 1.4474 18 8 5.6027 -9.2460 0.9727 19 6 5.4389 -10.4298 1.7563 20 6 6.2772 -11.5595 1.1549 21 9 5.8555 -11.8061 -0.1561 22 9 7.6258 -11.1873 1.1488 23 7 3.6647 -3.5705 0.9089 24 1 -0.4850 0.8400 0.0004 25 1 3.8711 -0.6780 -0.9023 26 1 3.8785 -0.6824 0.8776 27 1 5.2837 -2.6016 -1.7660 28 1 5.6850 -5.1079 -1.1001 29 1 3.6743 -5.9851 2.0411 30 1 4.3117 -8.2220 2.2393 31 1 5.7677 -10.2378 2.7776 32 1 4.3881 -10.7196 1.7613 33 1 6.1519 -12.4626 1.7524 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759988708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:31 Heat of formation + Delta-G solvation = -52.134060 kcal Electronic energy + Delta-G solvation = -21932.445969 eV Core-core repulsion = 17861.145000 eV Total energy + Delta-G solvation = -4071.300969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.098 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.92725 -47.99151 -42.25702 -40.86727 -38.64722 -36.23125 -35.26260 -33.93872 -32.72746 -30.99994 -30.36057 -28.83113 -24.77393 -24.10231 -23.42982 -22.05348 -21.39340 -19.81423 -19.36446 -19.05914 -18.47217 -18.21461 -17.78575 -17.39668 -17.02978 -16.78808 -16.28821 -15.96707 -15.75149 -15.26686 -14.79628 -14.77129 -14.60525 -14.43128 -14.35120 -13.86698 -13.78868 -13.34708 -13.01009 -12.66839 -12.43317 -12.17746 -12.14879 -11.80848 -11.70298 -11.50373 -11.22253 -10.85400 -10.23145 -9.75751 -9.07883 -8.35278 -6.45334 0.11930 1.04309 1.38466 1.41571 1.50381 1.63166 1.71545 2.30848 2.32402 2.58904 2.85061 2.97632 3.30961 3.33707 3.49333 3.91931 4.05102 4.21944 4.24869 4.38825 4.61760 4.67702 4.85913 4.93433 5.13812 5.23981 5.34583 5.76631 5.88970 6.02211 6.41989 6.56627 6.63146 7.05783 7.17634 7.33921 8.81699 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.050490 B = 0.002521 C = 0.002470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.428827 B =11102.558795 C =11331.443765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.955 3.045 4 H -0.265 1.265 5 H -0.229 1.229 6 H -0.280 1.280 7 C -0.546 4.546 8 H 0.028 0.972 9 C 0.239 3.761 10 N -0.344 5.344 11 C 0.064 3.936 12 C -0.295 4.295 13 C 0.286 3.714 14 N -0.622 5.622 15 C 0.730 3.270 16 O -0.590 6.590 17 N -0.587 5.587 18 O -0.149 6.149 19 C -0.035 4.035 20 C 0.271 3.729 21 F -0.220 7.220 22 F -0.219 7.219 23 N -0.342 5.342 24 H 0.272 0.728 25 H 0.084 0.916 26 H 0.047 0.953 27 H 0.211 0.789 28 H 0.164 0.836 29 H 0.426 0.574 30 H 0.430 0.570 31 H 0.126 0.874 32 H 0.124 0.876 33 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.419 -21.209 7.185 25.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.776 3.224 4 H -0.190 1.190 5 H -0.152 1.152 6 H -0.205 1.205 7 C -0.584 4.584 8 H 0.046 0.954 9 C 0.119 3.881 10 N -0.126 5.126 11 C -0.084 4.084 12 C -0.327 4.327 13 C 0.031 3.969 14 N -0.278 5.278 15 C 0.429 3.571 16 O -0.466 6.466 17 N -0.294 5.294 18 O -0.153 6.153 19 C -0.113 4.113 20 C 0.217 3.783 21 F -0.202 7.202 22 F -0.201 7.201 23 N -0.172 5.172 24 H 0.081 0.919 25 H 0.101 0.899 26 H 0.064 0.936 27 H 0.228 0.772 28 H 0.182 0.818 29 H 0.264 0.736 30 H 0.275 0.725 31 H 0.144 0.856 32 H 0.142 0.858 33 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges 12.214 -20.416 6.931 24.779 hybrid contribution -0.366 -0.010 0.225 0.430 sum 11.848 -20.426 7.156 24.674 Atomic orbital electron populations 1.70049 1.08580 1.28765 1.50794 1.25914 0.95758 1.03524 0.93281 0.85626 0.79910 0.77267 0.79621 1.19004 1.15198 1.20511 1.21246 0.90523 0.93756 1.52867 0.95395 1.19920 0.94131 0.74269 0.99780 1.48514 1.34415 1.09980 1.19670 1.23213 0.94277 0.94501 0.96364 1.21725 1.11917 0.97241 1.01772 1.18966 0.97592 0.86077 0.94288 1.40866 1.49634 1.05479 1.31784 1.15002 0.80374 0.79151 0.82529 1.90877 1.44886 1.82946 1.27843 1.45477 1.49849 1.02237 1.31874 1.90684 1.62842 1.13417 1.48325 1.24763 1.04285 0.83648 0.98573 1.22764 0.75334 0.99142 0.81092 1.93009 1.89776 1.95431 1.41942 1.93008 1.36911 1.93523 1.96637 1.77310 1.25703 0.96430 1.17793 0.91925 0.89882 0.93563 0.77243 0.81828 0.73583 0.72489 0.85579 0.85767 0.78792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.82 13.96 21.45 0.30 -57.52 16 2 C 0.01 0.78 5.47 84.65 0.46 1.25 16 3 Si 0.95 40.38 27.47 68.60 1.88 42.26 16 4 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 5 H -0.23 -8.35 6.54 99.48 0.65 -7.70 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 7 C -0.55 -31.21 9.79 25.60 0.25 -30.96 16 8 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 9 C 0.24 10.91 5.33 85.63 0.46 11.36 16 10 N -0.34 -15.27 3.67 -351.85 -1.29 -16.57 16 11 C 0.06 2.40 11.44 83.52 0.96 3.35 16 12 C -0.30 -11.53 9.61 22.11 0.21 -11.31 16 13 C 0.29 11.33 8.11 133.31 1.08 12.41 16 14 N -0.62 -18.42 5.46 -321.22 -1.75 -20.17 16 15 C 0.73 21.81 8.68 179.05 1.55 23.37 16 16 O -0.59 -23.17 13.88 13.35 0.19 -22.98 16 17 N -0.59 -11.48 6.39 -184.74 -1.18 -12.66 16 18 O -0.15 -3.21 11.00 -21.43 -0.24 -3.45 16 19 C -0.04 -0.27 6.45 71.98 0.46 0.19 16 20 C 0.27 2.42 5.63 71.98 0.41 2.83 16 21 F -0.22 -3.86 17.28 44.97 0.78 -3.09 16 22 F -0.22 -3.76 17.28 44.97 0.78 -2.98 16 23 N -0.34 -15.56 12.42 -54.43 -0.68 -16.24 16 24 H 0.27 15.36 8.31 -92.71 -0.77 14.58 16 25 H 0.08 3.30 7.12 -2.39 -0.02 3.29 16 26 H 0.05 2.03 7.57 -2.39 -0.02 2.01 16 27 H 0.21 5.76 8.06 -2.91 -0.02 5.74 16 28 H 0.16 6.43 5.91 -2.91 -0.02 6.41 16 29 H 0.43 9.31 8.84 -92.71 -0.82 8.50 16 30 H 0.43 3.93 8.56 -92.71 -0.79 3.14 16 31 H 0.13 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.12 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.20 -0.62 8.14 -2.39 -0.02 -0.63 16 Total: -1.00 -88.65 306.89 4.15 -84.50 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -0.48 Total: 16.40 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: 5.84 Total: 12.48 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -4.60 Total: -123.15 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -0.05 Total: -26.43 kcal Atomic # 9 Polarization: -7.62 SS G_CDS: 1.55 Total: -6.07 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 1.88 Total: 42.26 kcal Total: -88.65 4.15 -84.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759988708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.367 kcal (2) G-P(sol) polarization free energy of solvation -88.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds