Wall clock time and date at job start Tue Mar 31 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99850 * 2 1 4 4 C 1.47200 * 109.47271 * 179.97438 * 3 2 1 5 5 C 3.40058 * 161.18663 * 0.02562 * 2 1 3 6 6 C 4.78787 * 168.18356 * 0.02562 * 2 1 3 7 7 O 1.45192 * 109.46761 * 82.01193 * 6 5 4 8 8 C 1.34763 * 116.99726 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.47398 * 120.00219 * 180.02562 * 8 7 6 11 11 C 1.39729 * 120.19992 * 359.97438 * 10 8 7 12 12 C 1.37805 * 119.91272 * 179.97438 * 11 10 8 13 13 C 1.38588 * 120.33007 * 0.02562 * 12 11 10 14 14 C 1.38028 * 120.41707 * 359.97438 * 13 12 11 15 15 C 1.38832 * 120.07606 * 359.97438 * 14 13 12 16 16 O 1.35505 * 120.16557 * 179.97438 * 15 14 13 17 17 C 1.34808 * 116.99939 * 354.39821 * 16 15 14 18 18 H 1.08001 * 120.00267 * 5.06438 * 17 16 15 19 19 C 1.38707 * 119.99753 * 185.06265 * 17 16 15 20 20 N 1.31517 * 119.99994 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99839 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47364 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47284 * 119.99880 * 21 19 17 24 24 H 1.48505 * 109.47333 * 240.00171 * 21 19 17 25 25 H 1.08996 * 109.46873 * 60.00508 * 1 2 3 26 26 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47465 * 299.99935 * 1 2 3 28 28 H 1.09005 * 109.47127 * 59.99841 * 3 2 1 29 29 H 1.08994 * 109.47269 * 299.99674 * 3 2 1 30 30 H 1.09000 * 109.46693 * 322.01723 * 6 5 4 31 31 H 1.08994 * 109.46911 * 202.01605 * 6 5 4 32 32 H 1.07997 * 120.04805 * 0.26151 * 11 10 8 33 33 H 1.07992 * 119.83705 * 180.02562 * 12 11 10 34 34 H 1.08000 * 119.79247 * 179.97438 * 13 12 11 35 35 H 1.08000 * 119.96099 * 180.02562 * 14 13 12 36 36 H 0.97001 * 119.99735 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1893 0.0006 5 6 4.6479 1.0966 0.0005 6 6 6.1154 0.9804 0.0004 7 8 6.5827 0.7526 -1.3552 8 6 7.9127 0.6232 -1.5302 9 8 8.6612 0.6983 -0.5759 10 6 8.4594 0.3907 -2.8792 11 6 7.6025 0.3031 -3.9794 12 6 8.1201 0.0861 -5.2380 13 6 9.4877 -0.0466 -5.4190 14 6 10.3466 0.0376 -4.3418 15 6 9.8437 0.2569 -3.0664 16 8 10.6852 0.3393 -2.0076 17 6 11.9884 0.0846 -2.2402 18 1 12.3327 -0.0907 -3.2488 19 6 12.8871 0.0479 -1.1843 20 7 12.4678 0.2610 0.0438 21 14 14.6930 -0.3043 -1.5068 22 1 14.9055 -0.5078 -2.9624 23 1 15.5120 0.8441 -1.0423 24 1 15.0973 -1.5299 -0.7720 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 6.4136 0.1443 0.6329 31 1 6.5528 1.9015 0.3856 32 1 6.5364 0.4100 -3.8443 33 1 7.4567 0.0190 -6.0875 34 1 9.8839 -0.2169 -6.4091 35 1 11.4111 -0.0665 -4.4913 36 1 13.0963 0.2356 0.7822 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762806560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:37 Heat of formation + Delta-G solvation = -70.277233 kcal Electronic energy + Delta-G solvation = -21369.964349 eV Core-core repulsion = 17787.520661 eV Total energy + Delta-G solvation = -3582.443688 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.88693 -38.70834 -38.24567 -36.44728 -35.78934 -33.69976 -32.42930 -30.82185 -29.37695 -28.97753 -26.93479 -25.55885 -25.27243 -23.29592 -21.61121 -20.26316 -18.10415 -17.92019 -17.39020 -16.78517 -16.61931 -16.22982 -15.92471 -15.91221 -14.80378 -14.53606 -14.42150 -13.88795 -13.81105 -13.54863 -13.29324 -13.03366 -12.93540 -12.68720 -12.15658 -11.89884 -11.77637 -11.40754 -11.15007 -10.96871 -10.80016 -10.72323 -10.64142 -10.48450 -9.92642 -9.82384 -9.72951 -9.27348 -8.95314 -8.34670 -7.40139 -6.53099 -4.12718 1.57405 2.12971 2.29139 2.30106 3.08026 3.09223 3.14922 3.40891 3.48590 3.73671 3.87374 4.28710 4.53029 4.83644 4.95593 4.99301 5.01972 5.11520 5.14660 5.33036 5.36951 5.44511 5.50273 5.55155 5.61545 5.78608 6.04338 6.11547 6.54929 6.62733 6.75071 6.86099 6.94190 7.07718 7.20671 7.27396 7.40358 7.63846 7.85562 8.64581 8.87202 9.55948 10.60704 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.003167 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.275803 B = 8838.231890 C =10011.869705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.386 6.386 3 C 0.180 3.820 4 C -0.172 4.172 5 C -0.139 4.139 6 C 0.180 3.820 7 O -0.362 6.362 8 C 0.501 3.499 9 O -0.474 6.474 10 C -0.216 4.216 11 C -0.015 4.015 12 C -0.234 4.234 13 C -0.043 4.043 14 C -0.239 4.239 15 C 0.192 3.808 16 O -0.125 6.125 17 C -0.402 4.402 18 H 0.097 0.903 19 C 0.044 3.956 20 N -0.832 5.832 21 Si 0.943 3.057 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.135 0.865 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.239 1.494 -3.282 16.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.306 6.306 3 C 0.105 3.895 4 C -0.173 4.173 5 C -0.139 4.139 6 C 0.107 3.893 7 O -0.282 6.282 8 C 0.346 3.654 9 O -0.360 6.360 10 C -0.219 4.219 11 C -0.033 4.033 12 C -0.253 4.253 13 C -0.061 4.061 14 C -0.258 4.258 15 C 0.132 3.868 16 O -0.023 6.023 17 C -0.478 4.478 18 H 0.115 0.885 19 C -0.164 4.164 20 N -0.463 5.463 21 Si 0.767 3.233 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.199 1.199 25 H 0.063 0.937 26 H 0.108 0.892 27 H 0.062 0.938 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.143 0.857 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.152 0.848 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.811 1.429 -2.415 16.058 hybrid contribution 0.687 0.077 -0.074 0.696 sum -15.123 1.506 -2.489 15.401 Atomic orbital electron populations 1.22791 0.80252 1.03253 1.00219 1.88000 1.20091 1.26955 1.95508 1.19067 0.83413 0.85424 1.01596 1.21576 0.92663 1.04223 0.98814 1.21748 0.92812 0.97007 1.02331 1.19357 0.83277 1.03446 0.83228 1.86572 1.26646 1.84454 1.30495 1.21116 0.79087 0.74856 0.90331 1.91015 1.58166 1.45207 1.41654 1.17971 0.90715 1.22886 0.90286 1.20980 0.98451 0.92519 0.91364 1.20544 0.95103 1.13068 0.96589 1.20977 0.93336 0.94197 0.97619 1.21112 1.00880 1.11887 0.91878 1.19214 0.88763 0.90743 0.88059 1.84137 1.18081 1.70790 1.29299 1.21588 0.80267 1.50410 0.95529 0.88546 1.25427 1.00478 0.96152 0.94313 1.70124 1.35625 1.41704 0.98813 0.85620 0.80101 0.78495 0.79041 1.18873 1.19943 1.19933 0.93669 0.89232 0.93761 0.90672 0.90417 0.88443 0.88611 0.85747 0.86944 0.86917 0.84768 0.91740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -4.33 10.66 -35.23 -0.38 -4.71 16 3 C 0.18 1.77 6.41 34.37 0.22 1.99 16 4 C -0.17 -2.37 13.73 -37.12 -0.51 -2.88 16 5 C -0.14 -2.12 13.74 -37.12 -0.51 -2.63 16 6 C 0.18 2.96 5.95 34.37 0.20 3.16 16 7 O -0.36 -7.00 9.43 -40.66 -0.38 -7.39 16 8 C 0.50 11.46 7.89 34.46 0.27 11.73 16 9 O -0.47 -12.66 14.96 -26.59 -0.40 -13.06 16 10 C -0.22 -4.85 5.89 -104.82 -0.62 -5.47 16 11 C -0.01 -0.27 9.61 -39.18 -0.38 -0.65 16 12 C -0.23 -3.94 10.02 -39.61 -0.40 -4.34 16 13 C -0.04 -0.75 10.03 -39.53 -0.40 -1.15 16 14 C -0.24 -5.04 9.16 -39.44 -0.36 -5.41 16 15 C 0.19 4.73 6.66 -38.58 -0.26 4.47 16 16 O -0.13 -3.62 7.84 -20.99 -0.16 -3.79 16 17 C -0.40 -11.14 9.49 30.91 0.29 -10.85 16 18 H 0.10 2.41 5.21 -52.49 -0.27 2.14 16 19 C 0.04 1.21 5.49 -17.51 -0.10 1.12 16 20 N -0.83 -24.54 13.67 55.48 0.76 -23.79 16 21 Si 0.94 20.10 29.55 -169.99 -5.02 15.08 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 1.55 8.14 -51.93 -0.42 1.13 16 31 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 32 H 0.12 2.03 7.61 -52.49 -0.40 1.63 16 33 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 36 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 LS Contribution 332.37 15.07 5.01 5.01 Total: -1.00 -34.22 332.37 -5.90 -40.12 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -3.91 Total: 2.08 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: -1.42 Total: -9.57 kcal Atomic # 7 Polarization: -24.54 SS G_CDS: 0.76 Total: -23.79 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -1.32 Total: -28.94 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.22 -5.90 -40.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762806560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.153 kcal (2) G-P(sol) polarization free energy of solvation -34.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds