Wall clock time and date at job start Tue Mar 31 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42900 * 113.99850 * 2 1 4 4 C 1.47200 * 109.47271 * 179.97438 * 3 2 1 5 5 C 3.40058 * 161.18663 * 0.02562 * 2 1 3 6 6 C 4.78787 * 168.18356 * 0.02562 * 2 1 3 7 7 O 1.45192 * 109.46761 * 82.01193 * 6 5 4 8 8 C 1.34763 * 116.99726 * 179.97438 * 7 6 5 9 9 O 1.21513 * 119.99703 * 0.02562 * 8 7 6 10 10 C 1.47398 * 120.00219 * 180.02562 * 8 7 6 11 11 C 1.39729 * 120.19992 * 359.97438 * 10 8 7 12 12 C 1.37805 * 119.91272 * 179.97438 * 11 10 8 13 13 C 1.38588 * 120.33007 * 0.02562 * 12 11 10 14 14 C 1.38028 * 120.41707 * 359.97438 * 13 12 11 15 15 C 1.38832 * 120.07606 * 359.97438 * 14 13 12 16 16 O 1.35505 * 120.16557 * 179.97438 * 15 14 13 17 17 C 1.34808 * 116.99939 * 354.39821 * 16 15 14 18 18 H 1.08001 * 120.00267 * 5.06438 * 17 16 15 19 19 C 1.38707 * 119.99753 * 185.06265 * 17 16 15 20 20 N 1.31517 * 119.99994 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99839 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47364 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47284 * 119.99880 * 21 19 17 24 24 H 1.48505 * 109.47333 * 240.00171 * 21 19 17 25 25 H 1.08996 * 109.46873 * 60.00508 * 1 2 3 26 26 H 1.09001 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47465 * 299.99935 * 1 2 3 28 28 H 1.09005 * 109.47127 * 59.99841 * 3 2 1 29 29 H 1.08994 * 109.47269 * 299.99674 * 3 2 1 30 30 H 1.09000 * 109.46693 * 322.01723 * 6 5 4 31 31 H 1.08994 * 109.46911 * 202.01605 * 6 5 4 32 32 H 1.07997 * 120.04805 * 0.26151 * 11 10 8 33 33 H 1.07992 * 119.83705 * 180.02562 * 12 11 10 34 34 H 1.08000 * 119.79247 * 179.97438 * 13 12 11 35 35 H 1.08000 * 119.96099 * 180.02562 * 14 13 12 36 36 H 0.97001 * 119.99735 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4776 1.1893 0.0006 5 6 4.6479 1.0966 0.0005 6 6 6.1154 0.9804 0.0004 7 8 6.5827 0.7526 -1.3552 8 6 7.9127 0.6232 -1.5302 9 8 8.6612 0.6983 -0.5759 10 6 8.4594 0.3907 -2.8792 11 6 7.6025 0.3031 -3.9794 12 6 8.1201 0.0861 -5.2380 13 6 9.4877 -0.0466 -5.4190 14 6 10.3466 0.0376 -4.3418 15 6 9.8437 0.2569 -3.0664 16 8 10.6852 0.3393 -2.0076 17 6 11.9884 0.0846 -2.2402 18 1 12.3327 -0.0907 -3.2488 19 6 12.8871 0.0479 -1.1843 20 7 12.4678 0.2610 0.0438 21 14 14.6930 -0.3043 -1.5068 22 1 14.9055 -0.5078 -2.9624 23 1 15.5120 0.8441 -1.0423 24 1 15.0973 -1.5299 -0.7720 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6887 1.8463 -0.8900 30 1 6.4136 0.1443 0.6329 31 1 6.5528 1.9015 0.3856 32 1 6.5364 0.4100 -3.8443 33 1 7.4567 0.0190 -6.0875 34 1 9.8839 -0.2169 -6.4091 35 1 11.4111 -0.0665 -4.4913 36 1 13.0963 0.2356 0.7822 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000762806560.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:36 Heat of formation + Delta-G solvation = -92.158969 kcal Electronic energy + Delta-G solvation = -21370.913212 eV Core-core repulsion = 17787.520661 eV Total energy + Delta-G solvation = -3583.392552 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 290.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.62570 -40.44306 -38.97260 -38.15430 -37.52032 -34.86660 -34.37213 -32.40992 -30.67232 -30.39609 -27.85813 -27.39188 -26.21206 -24.89129 -23.30634 -21.91893 -19.92408 -19.44839 -18.76550 -18.32181 -17.63379 -17.42244 -17.29340 -16.88323 -16.39877 -16.16303 -15.94310 -15.68332 -15.33057 -14.96137 -14.71570 -14.45035 -14.07246 -13.87437 -13.58668 -13.53369 -13.06945 -12.73098 -12.62525 -12.56392 -12.36893 -12.16193 -12.08762 -11.74894 -11.52631 -11.10531 -11.08818 -10.86881 -10.57429 -9.94249 -9.13144 -8.48631 -6.19523 -0.07598 0.67765 0.86746 1.21744 1.34354 1.44543 1.54166 1.68690 2.12754 2.14741 2.75411 2.81396 3.13787 3.34030 3.37183 3.90270 4.06734 4.13764 4.14846 4.20189 4.27589 4.39783 4.45274 4.50691 4.56636 4.59720 4.63061 4.90654 4.90867 5.04840 5.11403 5.27129 5.45957 5.58096 5.65444 5.93117 6.10851 6.11713 6.28253 6.87311 6.92427 7.70659 8.71725 Molecular weight = 290.10amu Principal moments of inertia in cm(-1) A = 0.020933 B = 0.003167 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.275803 B = 8838.231890 C =10011.869705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.421 6.421 3 C 0.173 3.827 4 C -0.143 4.143 5 C -0.189 4.189 6 C 0.180 3.820 7 O -0.353 6.353 8 C 0.503 3.497 9 O -0.524 6.524 10 C -0.237 4.237 11 C -0.014 4.014 12 C -0.203 4.203 13 C -0.025 4.025 14 C -0.254 4.254 15 C 0.159 3.841 16 O -0.186 6.186 17 C -0.427 4.427 18 H 0.113 0.887 19 C -0.020 4.020 20 N -0.903 5.903 21 Si 1.024 2.976 22 H -0.243 1.243 23 H -0.269 1.269 24 H -0.270 1.270 25 H 0.061 0.939 26 H 0.095 0.905 27 H 0.061 0.939 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.151 0.849 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.133 0.867 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.669 1.345 -6.845 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C 0.099 3.901 4 C -0.143 4.143 5 C -0.189 4.189 6 C 0.107 3.893 7 O -0.272 6.272 8 C 0.350 3.650 9 O -0.414 6.414 10 C -0.240 4.240 11 C -0.032 4.032 12 C -0.222 4.222 13 C -0.043 4.043 14 C -0.273 4.273 15 C 0.104 3.896 16 O -0.088 6.088 17 C -0.502 4.502 18 H 0.130 0.870 19 C -0.220 4.220 20 N -0.538 5.538 21 Si 0.842 3.158 22 H -0.166 1.166 23 H -0.194 1.194 24 H -0.195 1.195 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.169 0.831 33 H 0.183 0.817 34 H 0.180 0.820 35 H 0.151 0.849 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.320 1.279 -6.049 19.335 hybrid contribution 0.930 0.134 0.765 1.212 sum -17.389 1.413 -5.284 18.229 Atomic orbital electron populations 1.23020 0.77931 1.04247 1.01839 1.87939 1.22641 1.27647 1.95875 1.19474 0.80715 0.85670 1.04282 1.22573 0.93767 1.01872 0.96110 1.21547 0.92732 0.99414 1.05196 1.19409 0.84658 1.03561 0.81669 1.86527 1.24556 1.83740 1.32381 1.21399 0.79723 0.73580 0.90291 1.90999 1.59599 1.47493 1.43289 1.18415 0.90787 1.23386 0.91373 1.21367 0.99292 0.91594 0.90922 1.21210 0.95530 1.08291 0.97128 1.21543 0.93281 0.91022 0.98470 1.21304 1.01723 1.12674 0.91636 1.19938 0.89530 0.91190 0.88964 1.84141 1.18840 1.74411 1.31441 1.22145 0.80648 1.50894 0.96524 0.86985 1.26796 1.05829 0.95645 0.93752 1.70303 1.37569 1.45736 1.00221 0.84470 0.73058 0.78289 0.79942 1.16602 1.19391 1.19494 0.92071 0.88687 0.92068 0.87672 0.87686 0.88816 0.88363 0.83095 0.81727 0.82029 0.84919 0.91810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -8.46 10.66 -148.98 -1.59 -10.04 16 3 C 0.17 2.90 6.41 70.18 0.45 3.35 16 4 C -0.14 -3.73 13.73 31.13 0.43 -3.30 16 5 C -0.19 -5.80 13.74 31.13 0.43 -5.37 16 6 C 0.18 6.23 5.95 70.18 0.42 6.65 16 7 O -0.35 -14.06 9.43 -56.73 -0.54 -14.59 16 8 C 0.50 24.20 7.89 70.23 0.55 24.75 16 9 O -0.52 -30.30 14.96 26.79 0.40 -29.90 16 10 C -0.24 -10.80 5.89 -20.00 -0.12 -10.91 16 11 C -0.01 -0.47 9.61 22.53 0.22 -0.25 16 12 C -0.20 -5.71 10.02 22.25 0.22 -5.49 16 13 C -0.03 -0.77 10.03 22.30 0.22 -0.54 16 14 C -0.25 -10.53 9.16 22.36 0.20 -10.33 16 15 C 0.16 8.12 6.66 22.92 0.15 8.28 16 16 O -0.19 -11.56 7.84 1.07 0.01 -11.56 16 17 C -0.43 -25.01 9.49 67.93 0.64 -24.37 16 18 H 0.11 5.82 5.21 -2.91 -0.02 5.81 16 19 C -0.02 -1.18 5.49 84.85 0.47 -0.71 16 20 N -0.90 -57.53 13.67 21.62 0.30 -57.24 16 21 Si 1.02 42.91 29.55 68.60 2.03 44.94 16 22 H -0.24 -9.13 7.11 99.48 0.71 -8.43 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 31 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 32 H 0.15 4.34 7.61 -2.91 -0.02 4.32 16 33 H 0.17 3.11 8.06 -2.91 -0.02 3.09 16 34 H 0.16 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.13 5.44 5.64 -2.91 -0.02 5.42 16 36 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -83.56 332.37 7.26 -76.30 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 1.11 Total: 18.85 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 5.54 Total: -16.75 kcal Atomic # 7 Polarization: -57.53 SS G_CDS: 0.30 Total: -57.24 kcal Atomic # 8 Polarization: -64.38 SS G_CDS: -1.71 Total: -66.09 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.94 kcal Total: -83.56 7.26 -76.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762806560.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.861 kcal (2) G-P(sol) polarization free energy of solvation -83.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.298 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds