Wall clock time and date at job start Tue Mar 31 2020 06:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40057 * 125.97544 * 179.77298 * 13 12 11 15 15 C 1.34781 * 120.00218 * 359.97438 * 14 13 12 16 16 O 1.21534 * 119.99562 * 0.02562 * 15 14 13 17 17 C 1.48118 * 119.99956 * 179.97438 * 15 14 13 18 18 C 1.39252 * 119.70766 * 180.02562 * 17 15 14 19 19 C 1.38653 * 119.12040 * 179.97438 * 18 17 15 20 20 C 1.38499 * 118.52434 * 359.97438 * 19 18 17 21 21 C 1.38893 * 119.33267 * 359.97438 * 20 19 18 22 22 F 1.35109 * 119.57673 * 179.97438 * 21 20 19 23 23 N 1.31699 * 120.84237 * 359.74429 * 21 20 19 24 24 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.08006 * 126.06074 * 359.95354 * 11 10 9 29 29 H 1.08003 * 126.06307 * 180.15773 * 12 11 10 30 30 H 0.97001 * 119.99957 * 179.97438 * 14 13 12 31 31 H 1.08005 * 120.43653 * 359.95629 * 18 17 15 32 32 H 1.07997 * 120.73539 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.33544 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9591 -5.4624 -1.3042 15 6 5.5250 -6.6037 -0.8639 16 8 5.0872 -7.1565 0.1259 17 6 6.6798 -7.1847 -1.5870 18 6 7.2595 -8.3643 -1.1271 19 6 8.3396 -8.8977 -1.8137 20 6 8.8026 -8.2332 -2.9372 21 6 8.1763 -7.0611 -3.3409 22 9 8.6243 -6.4086 -4.4358 23 7 7.1484 -6.5801 -2.6726 24 7 3.2287 -3.8132 -0.9445 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 1.5913 -4.7502 1.7307 29 1 3.5577 -6.3466 1.0449 30 1 5.3083 -5.0214 -2.0944 31 1 6.8730 -8.8570 -0.2472 32 1 8.8088 -9.8115 -1.4803 33 1 9.6423 -8.6225 -3.4938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000764301901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:52 Heat of formation + Delta-G solvation = 47.628591 kcal Electronic energy + Delta-G solvation = -21249.779630 eV Core-core repulsion = 17613.573919 eV Total energy + Delta-G solvation = -3636.205711 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 5.71 seconds Orbital eigenvalues (eV) -49.40534 -41.15055 -40.43336 -38.90266 -35.03705 -33.80556 -33.19589 -31.64558 -30.74688 -29.43560 -26.62918 -25.34654 -23.94024 -23.09574 -21.93927 -20.67857 -19.83793 -18.50022 -17.93404 -17.20305 -16.75913 -16.65125 -16.55983 -16.14292 -15.43285 -15.20536 -14.57308 -14.24694 -14.09575 -13.78428 -13.70668 -13.37775 -13.19448 -12.77774 -12.47705 -12.27924 -11.88348 -11.18113 -10.82613 -10.69844 -10.63232 -10.50701 -10.15359 -10.12460 -9.77567 -9.55265 -9.01154 -8.58243 -8.25488 -7.58010 -6.58435 -4.32536 0.02381 0.53642 2.14638 2.50369 2.74651 2.95703 3.20127 3.38619 3.40799 3.58446 3.63770 3.68351 3.91444 4.30298 4.35488 4.41923 4.44994 4.78623 5.15284 5.20050 5.25909 5.39162 5.49942 5.68523 5.99600 6.10268 6.33550 6.41769 6.54174 6.73181 6.93144 7.25583 7.41102 7.67424 7.79910 8.02205 8.33609 8.50056 8.60947 9.35631 10.79323 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.003221 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.475680 B = 8690.209046 C = 9629.288298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.023 3.977 3 Si 1.077 2.923 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.285 1.285 7 C -0.609 4.609 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.315 5.315 11 C 0.052 3.948 12 C -0.284 4.284 13 C 0.255 3.745 14 N -0.607 5.607 15 C 0.577 3.423 16 O -0.504 6.504 17 C 0.125 3.875 18 C -0.119 4.119 19 C -0.051 4.051 20 C -0.172 4.172 21 C 0.311 3.689 22 F -0.107 7.107 23 N -0.491 5.491 24 N -0.295 5.295 25 H 0.267 0.733 26 H 0.047 0.953 27 H 0.036 0.964 28 H 0.170 0.830 29 H 0.162 0.838 30 H 0.422 0.578 31 H 0.161 0.839 32 H 0.156 0.844 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.281 -19.126 -3.281 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.181 4.181 3 Si 0.903 3.097 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.211 1.211 7 C -0.647 4.647 8 H 0.082 0.918 9 C 0.131 3.869 10 N -0.097 5.097 11 C -0.098 4.098 12 C -0.315 4.315 13 C 0.001 3.999 14 N -0.254 5.254 15 C 0.361 3.639 16 O -0.377 6.377 17 C -0.013 4.013 18 C -0.140 4.140 19 C -0.077 4.077 20 C -0.193 4.193 21 C 0.155 3.845 22 F -0.086 7.086 23 N -0.208 5.208 24 N -0.126 5.126 25 H 0.077 0.923 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.187 0.813 29 H 0.180 0.820 30 H 0.260 0.740 31 H 0.179 0.821 32 H 0.174 0.826 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 15.189 -16.002 -3.711 22.373 hybrid contribution 0.908 -2.605 0.072 2.760 sum 16.097 -18.608 -3.639 24.872 Atomic orbital electron populations 1.70855 1.06777 1.30428 1.45939 1.25926 0.96302 1.02815 0.93083 0.83421 0.74811 0.74527 0.76891 1.20513 1.21223 1.21084 1.22108 0.95424 0.90423 1.56756 0.91793 1.19789 0.86286 0.82790 0.98078 1.48845 1.23221 1.19496 1.18091 1.22574 1.00429 0.90079 0.96709 1.21527 1.02227 1.06311 1.01443 1.19067 0.91537 0.94466 0.94790 1.42203 1.29074 1.24002 1.30120 1.17609 0.82002 0.80403 0.83895 1.90754 1.61731 1.60508 1.24752 1.20729 0.95809 0.93461 0.91322 1.22212 0.95522 0.94949 1.01348 1.21566 0.94161 0.99339 0.92592 1.22101 1.02607 0.95234 0.99372 1.18036 0.91498 0.89694 0.85278 1.91678 1.86717 1.80911 1.49287 1.66825 1.12068 1.34333 1.07604 1.77406 1.03307 1.15990 1.15874 0.92276 0.93519 0.94659 0.81317 0.82032 0.74019 0.82105 0.82590 0.82745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.45 13.65 55.43 0.76 -25.70 16 2 C 0.02 0.66 5.46 -17.82 -0.10 0.56 16 3 Si 1.08 25.13 29.90 -169.99 -5.08 20.05 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.61 -17.26 9.24 -34.44 -0.32 -17.58 16 8 H 0.06 1.90 7.81 -52.49 -0.41 1.49 16 9 C 0.25 6.32 5.57 -5.19 -0.03 6.29 16 10 N -0.31 -7.40 3.67 -62.56 -0.23 -7.63 16 11 C 0.05 1.03 11.43 -17.24 -0.20 0.83 16 12 C -0.28 -5.57 9.60 -39.83 -0.38 -5.95 16 13 C 0.25 5.24 8.11 -154.46 -1.25 3.99 16 14 N -0.61 -10.27 5.43 -11.91 -0.06 -10.33 16 15 C 0.58 8.65 7.78 -12.20 -0.09 8.56 16 16 O -0.50 -8.30 13.44 5.34 0.07 -8.23 16 17 C 0.13 1.47 6.75 -83.02 -0.56 0.91 16 18 C -0.12 -0.98 9.63 -39.05 -0.38 -1.36 16 19 C -0.05 -0.27 10.16 -39.33 -0.40 -0.67 16 20 C -0.17 -1.06 10.09 -39.24 -0.40 -1.46 16 21 C 0.31 3.05 8.41 -17.37 -0.15 2.90 16 22 F -0.11 -1.11 17.29 2.25 0.04 -1.07 16 23 N -0.49 -5.91 9.56 -10.14 -0.10 -6.01 16 24 N -0.29 -6.99 12.42 31.43 0.39 -6.60 16 25 H 0.27 7.62 7.22 -40.82 -0.29 7.32 16 26 H 0.05 1.14 7.94 -51.93 -0.41 0.73 16 27 H 0.04 0.93 8.00 -51.93 -0.42 0.52 16 28 H 0.17 2.69 8.06 -52.48 -0.42 2.26 16 29 H 0.16 2.97 5.91 -52.48 -0.31 2.66 16 30 H 0.42 6.62 8.15 -40.82 -0.33 6.29 16 31 H 0.16 1.15 7.64 -52.48 -0.40 0.75 16 32 H 0.16 0.27 8.06 -52.49 -0.42 -0.15 16 33 H 0.15 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 305.76 15.07 4.61 4.61 Total: -1.00 -33.58 305.76 -6.50 -40.07 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -2.64 Total: 3.82 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -4.25 Total: -2.98 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: 0.76 Total: -56.26 kcal Atomic # 8 Polarization: -8.30 SS G_CDS: 0.07 Total: -8.23 kcal Atomic # 9 Polarization: -1.11 SS G_CDS: 0.04 Total: -1.07 kcal Atomic # 14 Polarization: 25.13 SS G_CDS: -5.08 Total: 20.05 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.58 -6.50 -40.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764301901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.702 kcal (2) G-P(sol) polarization free energy of solvation -33.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.71 seconds