Wall clock time and date at job start Tue Mar 31 2020 06:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 N 1.46500 * 109.47299 * 180.02562 * 9 7 2 11 11 C 1.34972 * 125.97758 * 124.71469 * 10 9 7 12 12 C 1.35229 * 107.86711 * 179.83522 * 11 10 9 13 13 C 1.40431 * 107.86689 * 0.42326 * 12 11 10 14 14 N 1.40057 * 125.97544 * 179.77298 * 13 12 11 15 15 C 1.34781 * 120.00218 * 359.97438 * 14 13 12 16 16 O 1.21534 * 119.99562 * 0.02562 * 15 14 13 17 17 C 1.48118 * 119.99956 * 179.97438 * 15 14 13 18 18 C 1.39252 * 119.70766 * 180.02562 * 17 15 14 19 19 C 1.38653 * 119.12040 * 179.97438 * 18 17 15 20 20 C 1.38499 * 118.52434 * 359.97438 * 19 18 17 21 21 C 1.38893 * 119.33267 * 359.97438 * 20 19 18 22 22 F 1.35109 * 119.57673 * 179.97438 * 21 20 19 23 23 N 1.31699 * 120.84237 * 359.74429 * 21 20 19 24 24 N 1.31239 * 108.04544 * 359.74026 * 13 12 11 25 25 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 27 27 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 28 28 H 1.08006 * 126.06074 * 359.95354 * 11 10 9 29 29 H 1.08003 * 126.06307 * 180.15773 * 12 11 10 30 30 H 0.97001 * 119.99957 * 179.97438 * 14 13 12 31 31 H 1.08005 * 120.43653 * 359.95629 * 18 17 15 32 32 H 1.07997 * 120.73539 * 180.02562 * 19 18 17 33 33 H 1.08001 * 120.33544 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 7 2.2030 -3.6127 -0.0119 11 6 2.2489 -4.6216 0.8836 12 6 3.2624 -5.4441 0.5303 13 6 3.8669 -4.9133 -0.6208 14 7 4.9591 -5.4624 -1.3042 15 6 5.5250 -6.6037 -0.8639 16 8 5.0872 -7.1565 0.1259 17 6 6.6798 -7.1847 -1.5870 18 6 7.2595 -8.3643 -1.1271 19 6 8.3396 -8.8977 -1.8137 20 6 8.8026 -8.2332 -2.9372 21 6 8.1763 -7.0611 -3.3409 22 9 8.6243 -6.4086 -4.4358 23 7 7.1484 -6.5801 -2.6726 24 7 3.2287 -3.8132 -0.9445 25 1 -0.4850 -0.8400 0.0004 26 1 0.6281 -2.5591 0.8866 27 1 0.6207 -2.5548 -0.8933 28 1 1.5913 -4.7502 1.7307 29 1 3.5577 -6.3466 1.0449 30 1 5.3083 -5.0214 -2.0944 31 1 6.8730 -8.8570 -0.2472 32 1 8.8088 -9.8115 -1.4803 33 1 9.6423 -8.6225 -3.4938 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000764301901.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:45:51 Heat of formation + Delta-G solvation = 24.747730 kcal Electronic energy + Delta-G solvation = -21250.771818 eV Core-core repulsion = 17613.573919 eV Total energy + Delta-G solvation = -3637.197899 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 290.092 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -50.12251 -42.45472 -41.57752 -40.03122 -36.55355 -35.64265 -33.98369 -32.82830 -32.07113 -31.08319 -28.37703 -26.47778 -25.01491 -24.54144 -23.17809 -22.22655 -21.24639 -19.51816 -19.23587 -18.79223 -18.20883 -17.34133 -17.21935 -17.09434 -16.93265 -16.57776 -15.92260 -15.72862 -15.55582 -15.07796 -14.85041 -14.37262 -14.27789 -14.03701 -13.92945 -13.75882 -13.32653 -13.24978 -12.63806 -12.12476 -11.96566 -11.84432 -11.52931 -11.21210 -11.03746 -10.86224 -10.71265 -10.25127 -9.90178 -9.27554 -8.80246 -6.57993 -0.69747 -0.06828 0.86394 1.15616 1.34993 1.49775 1.56133 1.77883 2.02564 2.03400 2.33395 2.47316 2.55868 2.99229 3.13455 3.54220 3.73852 3.83128 3.91840 4.10335 4.21365 4.52330 4.60292 4.64468 4.74356 4.77588 4.84428 4.94388 4.99106 5.42582 5.52389 5.73182 5.88678 5.96601 6.24025 6.27394 6.39472 6.76273 6.89809 7.17390 8.56597 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.022955 B = 0.003221 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.475680 B = 8690.209046 C = 9629.288298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.018 4.018 3 Si 1.119 2.881 4 H -0.273 1.273 5 H -0.270 1.270 6 H -0.277 1.277 7 C -0.624 4.624 8 H 0.044 0.956 9 C 0.259 3.741 10 N -0.341 5.341 11 C 0.059 3.941 12 C -0.286 4.286 13 C 0.261 3.739 14 N -0.613 5.613 15 C 0.579 3.421 16 O -0.522 6.522 17 C 0.094 3.906 18 C -0.108 4.108 19 C -0.032 4.032 20 C -0.145 4.145 21 C 0.286 3.714 22 F -0.118 7.118 23 N -0.525 5.525 24 N -0.346 5.346 25 H 0.261 0.739 26 H 0.058 0.942 27 H 0.017 0.983 28 H 0.208 0.792 29 H 0.177 0.823 30 H 0.425 0.575 31 H 0.173 0.827 32 H 0.207 0.793 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.657 -21.337 -2.806 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.217 4.217 3 Si 0.940 3.060 4 H -0.198 1.198 5 H -0.195 1.195 6 H -0.203 1.203 7 C -0.662 4.662 8 H 0.062 0.938 9 C 0.140 3.860 10 N -0.123 5.123 11 C -0.089 4.089 12 C -0.317 4.317 13 C 0.007 3.993 14 N -0.261 5.261 15 C 0.365 3.635 16 O -0.396 6.396 17 C -0.042 4.042 18 C -0.129 4.129 19 C -0.057 4.057 20 C -0.165 4.165 21 C 0.129 3.871 22 F -0.097 7.097 23 N -0.243 5.243 24 N -0.177 5.177 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.035 0.965 28 H 0.224 0.776 29 H 0.194 0.806 30 H 0.262 0.738 31 H 0.190 0.810 32 H 0.224 0.776 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 17.578 -18.260 -3.232 25.551 hybrid contribution 0.303 -2.125 -0.115 2.150 sum 17.881 -20.385 -3.347 27.322 Atomic orbital electron populations 1.70946 1.07397 1.30220 1.47258 1.27263 0.96445 1.06017 0.92015 0.82890 0.74162 0.71187 0.77773 1.19791 1.19543 1.20305 1.22298 0.94662 0.92241 1.57007 0.93801 1.19455 0.86365 0.82684 0.97541 1.48625 1.23824 1.20251 1.19588 1.23259 1.00532 0.88505 0.96618 1.21770 1.02069 1.06696 1.01186 1.19451 0.91573 0.93453 0.94815 1.42416 1.28508 1.24848 1.30288 1.18227 0.82316 0.79254 0.83658 1.90707 1.62574 1.60728 1.25586 1.20297 0.96131 0.95360 0.92441 1.22483 0.95693 0.93256 1.01502 1.22125 0.92372 1.00128 0.91104 1.22568 1.02177 0.92846 0.98949 1.18455 0.91946 0.91208 0.85457 1.91652 1.86772 1.81438 1.49829 1.66551 1.13601 1.35802 1.08330 1.77312 1.04784 1.18152 1.17467 0.92900 0.92400 0.96532 0.77553 0.80573 0.73754 0.80997 0.77622 0.78891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.52 13.65 21.45 0.29 -54.23 16 2 C -0.02 -1.00 5.46 84.65 0.46 -0.54 16 3 Si 1.12 50.68 29.90 68.60 2.05 52.73 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 6 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.62 -36.27 9.24 25.60 0.24 -36.04 16 8 H 0.04 2.68 7.81 -2.91 -0.02 2.66 16 9 C 0.26 13.54 5.57 85.64 0.48 14.01 16 10 N -0.34 -16.41 3.67 -351.84 -1.29 -17.70 16 11 C 0.06 2.32 11.43 83.52 0.95 3.28 16 12 C -0.29 -11.19 9.60 22.11 0.21 -10.98 16 13 C 0.26 11.04 8.11 133.36 1.08 12.12 16 14 N -0.61 -21.40 5.43 -309.89 -1.68 -23.08 16 15 C 0.58 17.45 7.78 86.87 0.68 18.13 16 16 O -0.52 -16.94 13.44 -3.82 -0.05 -16.99 16 17 C 0.09 2.14 6.75 41.87 0.28 2.43 16 18 C -0.11 -1.48 9.63 22.61 0.22 -1.26 16 19 C -0.03 -0.19 10.16 22.43 0.23 0.04 16 20 C -0.14 -1.19 10.09 22.49 0.23 -0.97 16 21 C 0.29 5.19 8.41 84.87 0.71 5.90 16 22 F -0.12 -2.36 17.29 44.97 0.78 -1.58 16 23 N -0.52 -12.55 9.56 -185.99 -1.78 -14.33 16 24 N -0.35 -17.03 12.42 -54.49 -0.68 -17.71 16 25 H 0.26 15.24 7.22 -92.71 -0.67 14.57 16 26 H 0.06 2.86 7.94 -2.39 -0.02 2.85 16 27 H 0.02 0.92 8.00 -2.39 -0.02 0.91 16 28 H 0.21 6.21 8.06 -2.91 -0.02 6.19 16 29 H 0.18 6.33 5.91 -2.91 -0.02 6.31 16 30 H 0.42 14.10 8.15 -92.71 -0.76 13.34 16 31 H 0.17 1.94 7.64 -2.91 -0.02 1.92 16 32 H 0.21 -0.76 8.06 -2.91 -0.02 -0.78 16 33 H 0.19 0.12 8.06 -2.91 -0.02 0.09 16 Total: -1.00 -76.14 305.76 3.93 -72.20 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: 0.52 Total: 14.56 kcal Atomic # 6 Polarization: 0.36 SS G_CDS: 5.77 Total: 6.13 kcal Atomic # 7 Polarization: -121.91 SS G_CDS: -5.14 Total: -127.04 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: -0.05 Total: -16.99 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.78 Total: -1.58 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -76.14 3.93 -72.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000764301901.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.949 kcal (2) G-P(sol) polarization free energy of solvation -76.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds