Wall clock time and date at job start Tue Mar 31 2020 07:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 N 1.28009 * 120.00048 * 240.00079 * 4 2 1 6 6 N 1.40104 * 120.00133 * 180.02562 * 5 4 2 7 7 C 1.38565 * 120.00172 * 180.02562 * 6 5 4 8 8 N 1.32807 * 120.56393 * 359.72085 * 7 6 5 9 9 C 1.32089 * 120.77006 * 179.75607 * 8 7 6 10 10 N 1.30932 * 122.57967 * 0.51608 * 9 8 7 11 11 C 1.35276 * 121.14398 * 359.75369 * 10 9 8 12 12 C 1.40368 * 129.72496 * 179.97438 * 11 10 9 13 13 C 1.32363 * 115.78495 * 180.02562 * 12 11 10 14 14 S 1.75577 * 110.75730 * 359.97438 * 13 12 11 15 15 C 1.39725 * 117.77843 * 0.02562 * 11 10 9 16 16 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 17 17 C 1.50703 * 109.46801 * 65.00219 * 16 2 1 18 18 H 1.07998 * 120.00413 * 0.02562 * 17 16 2 19 19 C 1.37878 * 119.99680 * 179.97438 * 17 16 2 20 20 N 1.31512 * 120.00285 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99651 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47220 * 60.00221 * 21 19 17 23 23 H 1.48500 * 109.47168 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47296 * 300.00052 * 21 19 17 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.08006 * 119.99953 * 59.99820 * 4 2 1 29 29 H 0.96996 * 119.99812 * 359.97438 * 6 5 4 30 30 H 1.07999 * 118.70872 * 180.26945 * 9 8 7 31 31 H 1.08004 * 122.10633 * 0.02562 * 12 11 10 32 32 H 1.07995 * 124.62244 * 180.02562 * 13 12 11 33 33 H 1.09002 * 109.47069 * 184.99942 * 16 2 1 34 34 H 1.08991 * 109.47625 * 305.00262 * 16 2 1 35 35 H 0.96998 * 119.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7682 -0.0883 2.0731 6 7 3.2357 -0.7489 3.2168 7 6 4.0318 -0.0753 4.1292 8 7 4.3633 1.1949 3.9280 9 6 5.1180 1.8423 4.7974 10 7 5.5840 1.2788 5.8836 11 6 5.3070 -0.0127 6.1758 12 6 5.7062 -0.7893 7.2748 13 6 5.2715 -2.0394 7.2847 14 16 4.2876 -2.3673 5.8680 15 6 4.5073 -0.7261 5.2793 16 6 2.0401 -0.7213 -1.2492 17 6 1.6414 0.0570 -2.4766 18 1 1.0808 0.9745 -2.3757 19 6 1.9933 -0.4018 -3.7282 20 7 2.6774 -1.5183 -3.8510 21 14 1.4998 0.5633 -5.2495 22 1 2.0920 1.9237 -5.1865 23 1 1.9947 -0.1368 -6.4621 24 1 0.0199 0.6700 -5.3096 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7714 -1.7444 1.4014 29 1 3.0013 -1.6775 3.3703 30 1 5.3636 2.8758 4.6028 31 1 6.3288 -0.3917 8.0627 32 1 5.4914 -2.7594 8.0590 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 2.9246 -1.8413 -4.7316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766026792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:15 Heat of formation + Delta-G solvation = 104.039151 kcal Electronic energy + Delta-G solvation = -19130.957923 eV Core-core repulsion = 16063.411534 eV Total energy + Delta-G solvation = -3067.546389 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 5.02 seconds Orbital eigenvalues (eV) -41.06765 -37.84347 -36.53653 -35.38911 -33.33267 -32.07638 -31.17977 -29.19257 -27.00288 -25.30508 -24.43753 -23.64909 -22.13473 -20.92378 -19.57092 -18.54555 -17.79998 -17.30425 -16.70014 -16.05983 -15.44443 -15.27023 -14.64926 -14.54883 -14.20811 -13.53523 -13.34341 -13.20713 -13.03235 -12.59077 -12.26856 -11.81065 -11.63753 -11.26915 -10.93916 -10.87264 -10.81743 -10.72646 -10.45112 -10.10376 -9.80090 -9.57233 -9.48881 -9.28431 -9.12264 -8.79375 -8.39056 -7.81230 -6.04017 -4.06196 0.21522 0.87161 1.07332 1.51304 1.98382 2.37969 2.57601 3.32633 3.37300 3.39775 3.80391 3.83188 4.05887 4.41040 4.44658 4.59127 4.77194 5.14786 5.29077 5.32615 5.42715 5.54594 5.70397 5.89714 6.04697 6.13179 6.14700 6.38927 6.68643 6.78425 6.91909 6.94229 7.06455 7.57849 7.67485 7.93678 8.05743 8.33321 8.40192 8.98790 9.57776 11.07423 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.002863 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.758421 B = 9776.244162 C =10089.142596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.039 4.039 3 H 0.082 0.918 4 C 0.107 3.893 5 N -0.245 5.245 6 N -0.563 5.563 7 C 0.517 3.483 8 N -0.539 5.539 9 C 0.344 3.656 10 N -0.542 5.542 11 C 0.198 3.802 12 C -0.124 4.124 13 C -0.154 4.154 14 S 0.122 5.878 15 C -0.315 4.315 16 C 0.034 3.966 17 C -0.517 4.517 18 H 0.060 0.940 19 C 0.058 3.942 20 N -0.896 5.896 21 Si 0.893 3.107 22 H -0.276 1.276 23 H -0.288 1.288 24 H -0.276 1.276 25 H 0.049 0.951 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.389 0.611 30 H 0.202 0.798 31 H 0.157 0.843 32 H 0.179 0.821 33 H 0.018 0.982 34 H 0.021 0.979 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.695 -2.237 22.007 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.060 4.060 3 H 0.100 0.900 4 C -0.108 4.108 5 N -0.046 5.046 6 N -0.284 5.284 7 C 0.264 3.736 8 N -0.263 5.263 9 C 0.051 3.949 10 N -0.261 5.261 11 C 0.057 3.943 12 C -0.156 4.156 13 C -0.292 4.292 14 S 0.381 5.619 15 C -0.440 4.440 16 C -0.004 4.004 17 C -0.555 4.555 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.214 1.214 24 H -0.202 1.202 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.118 0.882 29 H 0.229 0.771 30 H 0.218 0.782 31 H 0.174 0.826 32 H 0.197 0.803 33 H 0.037 0.963 34 H 0.039 0.961 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.726 -1.786 21.452 21.698 hybrid contribution -0.004 -0.532 -0.230 0.580 sum 2.721 -2.318 21.222 21.521 Atomic orbital electron populations 1.21678 0.94268 1.01455 1.01222 1.20393 0.95484 1.00198 0.89934 0.90003 1.26830 0.91696 0.97909 0.94353 1.74685 1.12167 1.23455 0.94304 1.45663 1.50754 1.11871 1.20082 1.17292 0.85007 0.88218 0.83131 1.68354 1.19390 1.06129 1.32456 1.24694 0.86828 0.99797 0.83570 1.68481 1.26755 1.09228 1.21656 1.18994 0.92139 0.90613 0.92528 1.19593 1.04131 0.92899 0.98982 1.25479 1.01776 1.00032 1.01915 1.84085 1.53094 1.07067 1.17619 1.23653 1.14672 1.01808 1.03887 1.19123 0.96511 0.95543 0.89247 1.21118 1.35287 1.08488 0.90603 0.92230 1.25002 0.95121 0.95068 0.99165 1.69946 1.38628 1.21201 1.23713 0.86643 0.78890 0.80161 0.82242 1.20159 1.21372 1.20186 0.93147 0.94564 0.90643 0.88157 0.77074 0.78173 0.82580 0.80335 0.96327 0.96098 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.99 37.16 0.33 -1.85 16 2 C -0.04 -0.75 2.75 -91.77 -0.25 -1.01 16 3 H 0.08 1.68 8.11 -51.93 -0.42 1.26 16 4 C 0.11 1.83 9.66 -13.87 -0.13 1.70 16 5 N -0.24 -4.39 10.99 32.67 0.36 -4.03 16 6 N -0.56 -8.68 6.40 31.37 0.20 -8.48 16 7 C 0.52 8.08 7.66 -154.60 -1.18 6.90 16 8 N -0.54 -8.87 10.04 -13.75 -0.14 -9.01 16 9 C 0.34 4.72 12.23 -92.63 -1.13 3.58 16 10 N -0.54 -7.48 10.50 -12.94 -0.14 -7.61 16 11 C 0.20 2.56 7.02 -84.99 -0.60 1.97 16 12 C -0.12 -1.17 10.16 -40.71 -0.41 -1.58 16 13 C -0.15 -1.15 11.10 28.81 0.32 -0.83 16 14 S 0.12 1.15 22.91 -107.50 -2.46 -1.31 16 15 C -0.32 -4.17 6.46 -38.20 -0.25 -4.42 16 16 C 0.03 0.82 4.43 -27.88 -0.12 0.70 16 17 C -0.52 -13.81 8.41 -34.44 -0.29 -14.10 16 18 H 0.06 1.53 7.06 -52.49 -0.37 1.16 16 19 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 20 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 21 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.07 1.37 6.95 -51.93 -0.36 1.01 16 28 H 0.10 1.46 8.00 -52.48 -0.42 1.04 16 29 H 0.39 4.93 8.29 -182.60 -1.51 3.42 16 30 H 0.20 2.01 8.06 -52.49 -0.42 1.59 16 31 H 0.16 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 33 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -32.16 322.76 -10.60 -42.76 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.18 Total: -0.40 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -3.82 Total: -7.43 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: 1.02 Total: -54.57 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 1.15 SS G_CDS: -2.46 Total: -1.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.16 -10.60 -42.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766026792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.797 kcal (2) G-P(sol) polarization free energy of solvation -32.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.02 seconds