Wall clock time and date at job start Tue Mar 31 2020 07:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 N 1.28009 * 120.00048 * 240.00079 * 4 2 1 6 6 N 1.40104 * 120.00133 * 180.02562 * 5 4 2 7 7 C 1.38565 * 120.00172 * 180.02562 * 6 5 4 8 8 N 1.32807 * 120.56393 * 359.72085 * 7 6 5 9 9 C 1.32089 * 120.77006 * 179.75607 * 8 7 6 10 10 N 1.30932 * 122.57967 * 0.51608 * 9 8 7 11 11 C 1.35276 * 121.14398 * 359.75369 * 10 9 8 12 12 C 1.40368 * 129.72496 * 179.97438 * 11 10 9 13 13 C 1.32363 * 115.78495 * 180.02562 * 12 11 10 14 14 S 1.75577 * 110.75730 * 359.97438 * 13 12 11 15 15 C 1.39725 * 117.77843 * 0.02562 * 11 10 9 16 16 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 17 17 C 1.50703 * 109.46801 * 65.00219 * 16 2 1 18 18 H 1.07998 * 120.00413 * 0.02562 * 17 16 2 19 19 C 1.37878 * 119.99680 * 179.97438 * 17 16 2 20 20 N 1.31512 * 120.00285 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99651 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47220 * 60.00221 * 21 19 17 23 23 H 1.48500 * 109.47168 * 180.02562 * 21 19 17 24 24 H 1.48494 * 109.47296 * 300.00052 * 21 19 17 25 25 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 27 27 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 28 28 H 1.08006 * 119.99953 * 59.99820 * 4 2 1 29 29 H 0.96996 * 119.99812 * 359.97438 * 6 5 4 30 30 H 1.07999 * 118.70872 * 180.26945 * 9 8 7 31 31 H 1.08004 * 122.10633 * 0.02562 * 12 11 10 32 32 H 1.07995 * 124.62244 * 180.02562 * 13 12 11 33 33 H 1.09002 * 109.47069 * 184.99942 * 16 2 1 34 34 H 1.08991 * 109.47625 * 305.00262 * 16 2 1 35 35 H 0.96998 * 119.99928 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.7682 -0.0883 2.0731 6 7 3.2357 -0.7489 3.2168 7 6 4.0318 -0.0753 4.1292 8 7 4.3633 1.1949 3.9280 9 6 5.1180 1.8423 4.7974 10 7 5.5840 1.2788 5.8836 11 6 5.3070 -0.0127 6.1758 12 6 5.7062 -0.7893 7.2748 13 6 5.2715 -2.0394 7.2847 14 16 4.2876 -2.3673 5.8680 15 6 4.5073 -0.7261 5.2793 16 6 2.0401 -0.7213 -1.2492 17 6 1.6414 0.0570 -2.4766 18 1 1.0808 0.9745 -2.3757 19 6 1.9933 -0.4018 -3.7282 20 7 2.6774 -1.5183 -3.8510 21 14 1.4998 0.5633 -5.2495 22 1 2.0920 1.9237 -5.1865 23 1 1.9947 -0.1368 -6.4621 24 1 0.0199 0.6700 -5.3096 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.7714 -1.7444 1.4014 29 1 3.0013 -1.6775 3.3703 30 1 5.3636 2.8758 4.6028 31 1 6.3288 -0.3917 8.0627 32 1 5.4914 -2.7594 8.0590 33 1 3.1264 -0.7995 -1.2055 34 1 1.6055 -1.7198 -1.2951 35 1 2.9246 -1.8413 -4.7316 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766026792.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:14 Heat of formation + Delta-G solvation = 85.316738 kcal Electronic energy + Delta-G solvation = -19131.769788 eV Core-core repulsion = 16063.411534 eV Total energy + Delta-G solvation = -3068.358254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.05914 -39.11825 -37.53863 -36.77147 -34.88435 -33.71528 -32.28024 -30.31877 -28.82671 -26.30516 -25.90532 -24.85656 -23.55760 -21.93987 -20.95621 -19.68742 -18.94957 -18.49501 -18.10420 -17.56440 -16.54619 -16.47069 -16.19103 -15.51737 -15.09091 -14.92791 -14.78637 -14.74512 -14.17333 -13.84469 -13.55639 -13.28101 -12.91400 -12.78254 -12.49183 -12.37996 -12.24966 -12.14671 -11.78076 -11.66443 -11.31960 -11.23363 -11.02099 -10.50869 -10.39253 -10.34823 -9.85552 -8.79346 -8.15672 -6.24308 -0.64559 -0.18722 0.26491 0.76158 1.03279 1.22433 1.37872 1.44829 1.46845 1.54205 2.45303 2.77386 2.95892 3.05198 3.19128 3.42953 3.63478 3.84854 4.09642 4.21490 4.42761 4.56693 4.61975 4.78774 4.82976 4.96468 5.00306 5.20078 5.22009 5.29246 5.47564 5.53500 5.61895 5.73699 5.87031 6.00767 6.27380 6.89576 6.92682 7.25883 7.43947 8.96151 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.028807 B = 0.002863 C = 0.002775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 971.758421 B = 9776.244162 C =10089.142596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.029 4.029 3 H 0.065 0.935 4 C 0.105 3.895 5 N -0.267 5.267 6 N -0.561 5.561 7 C 0.496 3.504 8 N -0.577 5.577 9 C 0.334 3.666 10 N -0.550 5.550 11 C 0.182 3.818 12 C -0.145 4.145 13 C -0.122 4.122 14 S 0.147 5.853 15 C -0.336 4.336 16 C 0.041 3.959 17 C -0.529 4.529 18 H 0.067 0.933 19 C 0.001 3.999 20 N -0.935 5.935 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.263 1.263 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.128 0.872 29 H 0.402 0.598 30 H 0.227 0.773 31 H 0.179 0.821 32 H 0.225 0.775 33 H -0.017 1.017 34 H 0.009 0.991 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.349 -2.872 23.930 24.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.050 4.050 3 H 0.083 0.917 4 C -0.110 4.110 5 N -0.068 5.068 6 N -0.284 5.284 7 C 0.244 3.756 8 N -0.302 5.302 9 C 0.042 3.958 10 N -0.270 5.270 11 C 0.041 3.959 12 C -0.175 4.175 13 C -0.260 4.260 14 S 0.407 5.593 15 C -0.460 4.460 16 C 0.003 3.997 17 C -0.567 4.567 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.575 5.575 21 Si 0.784 3.216 22 H -0.197 1.197 23 H -0.213 1.213 24 H -0.188 1.188 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.145 0.855 29 H 0.244 0.756 30 H 0.243 0.757 31 H 0.196 0.804 32 H 0.241 0.759 33 H 0.001 0.999 34 H 0.027 0.973 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.375 -2.419 23.406 23.650 hybrid contribution 0.188 -0.407 -0.652 0.791 sum 2.563 -2.827 22.754 23.072 Atomic orbital electron populations 1.21597 0.92173 1.02370 1.01734 1.20082 0.97168 0.98682 0.89088 0.91680 1.26553 0.92025 0.98839 0.93593 1.74508 1.11872 1.25193 0.95260 1.45469 1.51125 1.12393 1.19433 1.17574 0.85524 0.88568 0.83974 1.68309 1.20772 1.07187 1.33945 1.25188 0.86476 1.00753 0.83362 1.68520 1.26834 1.10068 1.21561 1.19651 0.92099 0.90581 0.93566 1.19815 1.05556 0.93310 0.98837 1.26051 0.98791 0.99910 1.01233 1.84049 1.53033 1.04103 1.18122 1.23848 1.14807 1.04126 1.03252 1.18948 0.94198 0.95311 0.91249 1.21570 1.34726 1.08753 0.91637 0.91523 1.25891 0.95196 0.96029 1.02538 1.70080 1.40109 1.22958 1.24374 0.85586 0.79159 0.78630 0.78213 1.19658 1.21321 1.18763 0.92035 0.92137 0.91956 0.85531 0.75637 0.75748 0.80391 0.75851 0.99852 0.97300 0.92946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.00 8.99 71.98 0.65 -3.36 16 2 C -0.03 -1.14 2.75 -11.54 -0.03 -1.17 16 3 H 0.06 2.75 8.11 -2.39 -0.02 2.73 16 4 C 0.10 3.59 9.66 88.67 0.86 4.45 16 5 N -0.27 -9.68 10.99 -50.46 -0.55 -10.23 16 6 N -0.56 -17.34 6.40 -54.65 -0.35 -17.69 16 7 C 0.50 15.65 7.66 133.41 1.02 16.67 16 8 N -0.58 -19.47 10.04 -197.43 -1.98 -21.46 16 9 C 0.33 9.33 12.23 181.05 2.21 11.54 16 10 N -0.55 -15.05 10.50 -194.86 -2.05 -17.10 16 11 C 0.18 4.52 7.02 39.49 0.28 4.80 16 12 C -0.14 -2.32 10.16 21.70 0.22 -2.10 16 13 C -0.12 -1.34 11.10 66.73 0.74 -0.60 16 14 S 0.15 2.41 22.91 -56.49 -1.29 1.12 16 15 C -0.34 -8.63 6.46 23.17 0.15 -8.48 16 16 C 0.04 2.06 4.43 29.85 0.13 2.19 16 17 C -0.53 -28.70 8.41 25.60 0.22 -28.48 16 18 H 0.07 3.44 7.06 -2.91 -0.02 3.42 16 19 C 0.00 0.06 5.46 84.66 0.46 0.52 16 20 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 21 Si 0.96 43.49 29.54 68.60 2.03 45.52 16 22 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 25 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.06 2.22 6.95 -2.39 -0.02 2.20 16 28 H 0.13 3.57 8.00 -2.91 -0.02 3.55 16 29 H 0.40 9.99 8.29 -213.32 -1.77 8.22 16 30 H 0.23 4.59 8.06 -2.91 -0.02 4.56 16 31 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.22 0.39 8.06 -2.91 -0.02 0.37 16 33 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 Total: -1.00 -71.69 322.76 2.34 -69.35 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -0.65 Total: 10.02 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: 6.91 Total: -4.01 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -4.65 Total: -121.99 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 2.41 SS G_CDS: -1.29 Total: 1.12 kcal Total: -71.69 2.34 -69.35 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766026792.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.669 kcal (2) G-P(sol) polarization free energy of solvation -71.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds