Wall clock time and date at job start Tue Mar 31 2020 07:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.50702 * 109.47135 * 240.00260 * 2 1 3 5 5 N 1.28023 * 120.00129 * 119.72302 * 4 2 1 6 6 N 1.40097 * 120.00162 * 180.27948 * 5 4 2 7 7 C 1.38562 * 119.99810 * 180.02562 * 6 5 4 8 8 N 1.32811 * 120.56916 * 359.71514 * 7 6 5 9 9 C 1.32083 * 120.76940 * 179.67547 * 8 7 6 10 10 N 1.30935 * 122.58525 * 0.64563 * 9 8 7 11 11 C 1.35268 * 121.13673 * 359.67175 * 10 9 8 12 12 C 1.40380 * 129.72232 * 180.02562 * 11 10 9 13 13 C 1.32366 * 115.78515 * 179.97438 * 12 11 10 14 14 S 1.75576 * 110.75647 * 359.97438 * 13 12 11 15 15 C 1.39720 * 117.78407 * 359.97438 * 11 10 9 16 16 C 1.52995 * 109.47329 * 120.00599 * 2 1 3 17 17 C 1.50709 * 109.46758 * 294.99974 * 16 2 1 18 18 H 1.07991 * 119.99974 * 359.97438 * 17 16 2 19 19 C 1.37876 * 119.99611 * 180.02562 * 17 16 2 20 20 N 1.31518 * 119.99527 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00398 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47262 * 89.99943 * 21 19 17 23 23 H 1.48493 * 109.47391 * 209.99854 * 21 19 17 24 24 H 1.48504 * 109.47117 * 330.00200 * 21 19 17 25 25 H 1.08996 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46996 * 299.99741 * 1 2 3 27 27 H 1.09001 * 109.47339 * 59.99584 * 1 2 3 28 28 H 1.08002 * 120.00299 * 300.00451 * 4 2 1 29 29 H 0.97000 * 119.99715 * 359.97438 * 6 5 4 30 30 H 1.08007 * 118.70374 * 180.29319 * 9 8 7 31 31 H 1.08000 * 122.10356 * 0.02562 * 12 11 10 32 32 H 1.07996 * 124.62218 * 179.97438 * 13 12 11 33 33 H 1.08998 * 109.47546 * 54.99854 * 16 2 1 34 34 H 1.09001 * 109.47447 * 175.00384 * 16 2 1 35 35 H 0.97008 * 119.99269 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7640 -0.0866 -2.0759 6 7 3.2261 -0.7453 -3.2227 7 6 4.0184 -0.0703 -4.1374 8 7 4.3419 1.2027 -3.9409 9 6 5.1022 1.8481 -4.8070 10 7 5.5633 1.2865 -5.8962 11 6 5.2847 -0.0043 -6.1894 12 6 5.6789 -0.7792 -7.2916 13 6 5.2438 -2.0292 -7.3017 14 16 4.2671 -2.3597 -5.8806 15 6 4.4886 -0.7191 -5.2908 16 6 2.0400 -0.7213 1.2491 17 6 1.6413 0.0569 2.4766 18 1 1.0807 0.9744 2.3757 19 6 1.9933 -0.4019 3.7282 20 7 1.6458 0.2775 4.7993 21 14 2.9637 -1.9885 3.9026 22 1 4.4172 -1.6851 3.8778 23 1 2.6164 -2.6422 5.1899 24 1 2.6290 -2.8996 2.7787 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7714 -1.7443 -1.4016 29 1 2.9920 -1.6741 -3.3761 30 1 5.3486 2.8814 -4.6118 31 1 6.2988 -0.3807 -8.0811 32 1 5.4600 -2.7479 -8.0783 33 1 1.6055 -1.7199 1.2950 34 1 3.1264 -0.7995 1.2055 35 1 1.8931 -0.0456 5.6799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000766026793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:26 Heat of formation + Delta-G solvation = 108.027212 kcal Electronic energy + Delta-G solvation = -19189.048412 eV Core-core repulsion = 16121.674958 eV Total energy + Delta-G solvation = -3067.373454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.12996 -37.94791 -36.60823 -35.50186 -33.37294 -32.11494 -31.27261 -29.32413 -27.57615 -25.36205 -24.44474 -23.61832 -21.97038 -20.92219 -19.59365 -18.66136 -17.85905 -17.40266 -16.87948 -16.41798 -15.50915 -15.32248 -14.70122 -14.28723 -14.27421 -13.70552 -13.46698 -13.31565 -13.10724 -12.66175 -12.43171 -12.09001 -11.69474 -11.46029 -11.09568 -10.93327 -10.86316 -10.77224 -10.17949 -10.05079 -9.89459 -9.73881 -9.57027 -9.33620 -9.18561 -8.89956 -8.57121 -7.89098 -6.07343 -4.05658 0.15882 0.80691 1.01458 1.45442 1.92087 2.28933 2.46773 3.28327 3.36125 3.37061 3.74559 3.77696 3.99396 4.35462 4.41644 4.52472 4.72219 5.02110 5.22005 5.26439 5.35906 5.49231 5.63832 5.79174 5.94770 6.04950 6.06974 6.31108 6.57974 6.65436 6.76425 6.91056 6.98530 7.13268 7.30101 7.71848 7.98219 8.30626 8.48783 8.97309 9.54273 11.05688 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.003095 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.599515 B = 9044.269985 C = 9318.856611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.029 4.029 3 H 0.087 0.913 4 C 0.100 3.900 5 N -0.240 5.240 6 N -0.564 5.564 7 C 0.516 3.484 8 N -0.538 5.538 9 C 0.344 3.656 10 N -0.540 5.540 11 C 0.199 3.801 12 C -0.124 4.124 13 C -0.153 4.153 14 S 0.121 5.879 15 C -0.315 4.315 16 C -0.003 4.003 17 C -0.516 4.516 18 H 0.078 0.922 19 C 0.068 3.932 20 N -0.901 5.901 21 Si 0.877 3.123 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.267 1.267 25 H 0.049 0.951 26 H 0.080 0.920 27 H 0.038 0.962 28 H 0.102 0.898 29 H 0.389 0.611 30 H 0.203 0.797 31 H 0.157 0.843 32 H 0.180 0.820 33 H 0.020 0.980 34 H 0.014 0.986 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.033 -6.223 -24.514 25.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.050 4.050 3 H 0.106 0.894 4 C -0.115 4.115 5 N -0.041 5.041 6 N -0.285 5.285 7 C 0.263 3.737 8 N -0.262 5.262 9 C 0.052 3.948 10 N -0.260 5.260 11 C 0.058 3.942 12 C -0.156 4.156 13 C -0.291 4.291 14 S 0.380 5.620 15 C -0.440 4.440 16 C -0.041 4.041 17 C -0.554 4.554 18 H 0.096 0.904 19 C -0.133 4.133 20 N -0.540 5.540 21 Si 0.704 3.296 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.191 1.191 25 H 0.068 0.932 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.119 0.881 29 H 0.230 0.770 30 H 0.219 0.781 31 H 0.175 0.825 32 H 0.197 0.803 33 H 0.038 0.962 34 H 0.032 0.968 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 4.984 -5.643 -23.904 25.062 hybrid contribution 0.731 -1.780 -0.424 1.970 sum 5.715 -7.423 -24.328 26.069 Atomic orbital electron populations 1.21688 0.93800 1.01512 1.01763 1.20162 0.95813 1.00216 0.88844 0.89433 1.26838 0.92053 0.97940 0.94657 1.74682 1.11917 1.23458 0.94059 1.45646 1.51149 1.11898 1.19791 1.17288 0.85068 0.88206 0.83154 1.68356 1.19226 1.05954 1.32693 1.24714 0.86729 0.99840 0.83558 1.68490 1.26785 1.09232 1.21454 1.19001 0.92120 0.90587 0.92527 1.19606 1.04107 0.92913 0.98948 1.25480 1.01734 1.00037 1.01877 1.84074 1.53515 1.07068 1.17339 1.23654 1.14739 1.01856 1.03749 1.19613 0.95962 0.96220 0.92353 1.21033 1.35915 1.09712 0.88748 0.90427 1.24986 0.95532 0.96864 0.95913 1.69905 1.46835 1.39148 0.98072 0.86834 0.80785 0.84418 0.77538 1.20337 1.21366 1.19134 0.93209 0.90116 0.94311 0.88114 0.77040 0.78091 0.82527 0.80304 0.96159 0.96800 0.92678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 8.99 37.16 0.33 -1.83 16 2 C -0.03 -0.54 2.75 -91.77 -0.25 -0.80 16 3 H 0.09 1.76 8.11 -51.93 -0.42 1.34 16 4 C 0.10 1.61 9.66 -13.86 -0.13 1.48 16 5 N -0.24 -4.10 10.99 32.68 0.36 -3.74 16 6 N -0.56 -8.25 6.40 31.37 0.20 -8.05 16 7 C 0.52 7.75 7.66 -154.60 -1.18 6.57 16 8 N -0.54 -8.58 10.04 -13.75 -0.14 -8.71 16 9 C 0.34 4.58 12.23 -92.64 -1.13 3.44 16 10 N -0.54 -7.23 10.51 -12.94 -0.14 -7.37 16 11 C 0.20 2.48 7.02 -84.99 -0.60 1.88 16 12 C -0.12 -1.12 10.16 -40.70 -0.41 -1.53 16 13 C -0.15 -1.08 11.10 28.81 0.32 -0.76 16 14 S 0.12 1.07 22.91 -107.50 -2.46 -1.39 16 15 C -0.31 -4.00 6.46 -38.20 -0.25 -4.24 16 16 C 0.00 -0.07 3.50 -27.88 -0.10 -0.16 16 17 C -0.52 -13.91 8.96 -34.44 -0.31 -14.22 16 18 H 0.08 2.23 7.30 -52.49 -0.38 1.85 16 19 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.90 -27.08 13.96 55.43 0.77 -26.30 16 21 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.27 -6.08 6.54 56.52 0.37 -5.71 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.08 1.50 6.95 -51.93 -0.36 1.14 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.10 1.33 8.00 -52.49 -0.42 0.91 16 29 H 0.39 4.60 8.29 -182.60 -1.51 3.08 16 30 H 0.20 1.95 8.06 -52.48 -0.42 1.52 16 31 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.18 0.61 8.06 -52.49 -0.42 0.19 16 33 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 34 H 0.01 0.32 7.57 -51.93 -0.39 -0.08 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -32.64 319.16 -10.22 -42.86 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -5.15 Total: -0.23 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: -3.81 Total: -8.33 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 1.06 Total: -54.18 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.46 Total: -1.39 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.64 -10.22 -42.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766026793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.892 kcal (2) G-P(sol) polarization free energy of solvation -32.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds