Wall clock time and date at job start Tue Mar 31 2020 07:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47538 * 2 1 4 4 C 1.50702 * 109.47135 * 240.00260 * 2 1 3 5 5 N 1.28023 * 120.00129 * 119.72302 * 4 2 1 6 6 N 1.40097 * 120.00162 * 180.27948 * 5 4 2 7 7 C 1.38562 * 119.99810 * 180.02562 * 6 5 4 8 8 N 1.32811 * 120.56916 * 359.71514 * 7 6 5 9 9 C 1.32083 * 120.76940 * 179.67547 * 8 7 6 10 10 N 1.30935 * 122.58525 * 0.64563 * 9 8 7 11 11 C 1.35268 * 121.13673 * 359.67175 * 10 9 8 12 12 C 1.40380 * 129.72232 * 180.02562 * 11 10 9 13 13 C 1.32366 * 115.78515 * 179.97438 * 12 11 10 14 14 S 1.75576 * 110.75647 * 359.97438 * 13 12 11 15 15 C 1.39720 * 117.78407 * 359.97438 * 11 10 9 16 16 C 1.52995 * 109.47329 * 120.00599 * 2 1 3 17 17 C 1.50709 * 109.46758 * 294.99974 * 16 2 1 18 18 H 1.07991 * 119.99974 * 359.97438 * 17 16 2 19 19 C 1.37876 * 119.99611 * 180.02562 * 17 16 2 20 20 N 1.31518 * 119.99527 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00398 * 359.97438 * 19 17 16 22 22 H 1.48505 * 109.47262 * 89.99943 * 21 19 17 23 23 H 1.48493 * 109.47391 * 209.99854 * 21 19 17 24 24 H 1.48504 * 109.47117 * 330.00200 * 21 19 17 25 25 H 1.08996 * 109.47277 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.46996 * 299.99741 * 1 2 3 27 27 H 1.09001 * 109.47339 * 59.99584 * 1 2 3 28 28 H 1.08002 * 120.00299 * 300.00451 * 4 2 1 29 29 H 0.97000 * 119.99715 * 359.97438 * 6 5 4 30 30 H 1.08007 * 118.70374 * 180.29319 * 9 8 7 31 31 H 1.08000 * 122.10356 * 0.02562 * 12 11 10 32 32 H 1.07996 * 124.62218 * 179.97438 * 13 12 11 33 33 H 1.08998 * 109.47546 * 54.99854 * 16 2 1 34 34 H 1.09001 * 109.47447 * 175.00384 * 16 2 1 35 35 H 0.97008 * 119.99269 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 2.7640 -0.0866 -2.0759 6 7 3.2261 -0.7453 -3.2227 7 6 4.0184 -0.0703 -4.1374 8 7 4.3419 1.2027 -3.9409 9 6 5.1022 1.8481 -4.8070 10 7 5.5633 1.2865 -5.8962 11 6 5.2847 -0.0043 -6.1894 12 6 5.6789 -0.7792 -7.2916 13 6 5.2438 -2.0292 -7.3017 14 16 4.2671 -2.3597 -5.8806 15 6 4.4886 -0.7191 -5.2908 16 6 2.0400 -0.7213 1.2491 17 6 1.6413 0.0569 2.4766 18 1 1.0807 0.9744 2.3757 19 6 1.9933 -0.4019 3.7282 20 7 1.6458 0.2775 4.7993 21 14 2.9637 -1.9885 3.9026 22 1 4.4172 -1.6851 3.8778 23 1 2.6164 -2.6422 5.1899 24 1 2.6290 -2.8996 2.7787 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.7714 -1.7443 -1.4016 29 1 2.9920 -1.6741 -3.3761 30 1 5.3486 2.8814 -4.6118 31 1 6.2988 -0.3807 -8.0811 32 1 5.4600 -2.7479 -8.0783 33 1 1.6055 -1.7199 1.2950 34 1 3.1264 -0.7995 1.2055 35 1 1.8931 -0.0456 5.6799 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766026793.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:53:25 Heat of formation + Delta-G solvation = 88.058435 kcal Electronic energy + Delta-G solvation = -19189.914323 eV Core-core repulsion = 16121.674958 eV Total energy + Delta-G solvation = -3068.239365 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.06323 -39.14336 -37.55883 -36.79971 -34.85781 -33.80687 -32.31666 -30.42366 -29.29293 -26.28893 -25.79071 -24.77132 -23.34905 -21.91770 -20.94221 -19.76289 -18.97168 -18.78918 -18.16620 -17.62623 -16.50743 -16.27008 -16.20572 -15.52002 -15.28331 -14.99990 -14.92483 -14.58133 -14.40826 -13.84591 -13.75064 -13.32852 -13.00460 -12.88811 -12.43171 -12.38417 -12.16479 -11.87678 -11.73109 -11.62732 -11.50755 -11.30413 -11.03159 -10.71845 -10.39800 -10.35070 -9.86737 -8.79497 -8.23335 -6.26112 -0.64826 -0.19069 0.26408 0.75527 1.02820 1.21555 1.37228 1.39661 1.39767 1.50812 2.39701 2.77037 2.95505 3.04538 3.12369 3.42798 3.62421 3.83878 4.07975 4.19365 4.38002 4.48375 4.60924 4.76859 4.82930 4.92902 4.99307 5.07382 5.19328 5.22083 5.35181 5.48816 5.60887 5.62442 5.70596 6.00239 6.34281 6.81320 6.92398 7.26045 7.37127 8.93097 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.024848 B = 0.003095 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.599515 B = 9044.269985 C = 9318.856611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.024 4.024 3 H 0.061 0.939 4 C 0.104 3.896 5 N -0.267 5.267 6 N -0.559 5.559 7 C 0.496 3.504 8 N -0.577 5.577 9 C 0.334 3.666 10 N -0.551 5.551 11 C 0.181 3.819 12 C -0.146 4.146 13 C -0.123 4.123 14 S 0.151 5.849 15 C -0.336 4.336 16 C 0.001 3.999 17 C -0.518 4.518 18 H 0.041 0.959 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.943 3.057 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.238 1.238 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.138 0.862 29 H 0.403 0.597 30 H 0.225 0.775 31 H 0.178 0.822 32 H 0.224 0.776 33 H 0.037 0.963 34 H 0.010 0.990 35 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.877 -9.403 -27.494 29.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.045 4.045 3 H 0.079 0.921 4 C -0.111 4.111 5 N -0.068 5.068 6 N -0.283 5.283 7 C 0.244 3.756 8 N -0.302 5.302 9 C 0.042 3.958 10 N -0.270 5.270 11 C 0.040 3.960 12 C -0.176 4.176 13 C -0.261 4.261 14 S 0.411 5.589 15 C -0.460 4.460 16 C -0.038 4.038 17 C -0.556 4.556 18 H 0.059 0.941 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.767 3.233 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.161 1.161 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.155 0.845 29 H 0.245 0.755 30 H 0.241 0.759 31 H 0.195 0.805 32 H 0.241 0.759 33 H 0.056 0.944 34 H 0.028 0.972 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.825 -8.840 -26.928 28.934 hybrid contribution 0.480 -0.756 0.353 0.963 sum 6.306 -9.596 -26.575 28.949 Atomic orbital electron populations 1.21601 0.92468 1.02711 1.01330 1.19887 0.96961 0.98665 0.89005 0.92084 1.26504 0.92086 0.99107 0.93436 1.74521 1.11954 1.25291 0.95080 1.45426 1.51380 1.12421 1.19070 1.17562 0.85574 0.88472 0.84015 1.68312 1.20619 1.07112 1.34150 1.25168 0.86468 1.00750 0.83414 1.68522 1.26963 1.10155 1.21383 1.19643 0.92170 0.90540 0.93617 1.19817 1.05589 0.93384 0.98812 1.26049 0.98810 0.99868 1.01328 1.84000 1.53274 1.03962 1.17647 1.23851 1.14823 1.04213 1.03095 1.19520 0.95742 0.96568 0.91936 1.21375 1.34560 1.08813 0.90833 0.94079 1.25931 0.96922 1.00795 0.95559 1.70067 1.49008 1.41521 0.98745 0.85764 0.78822 0.80299 0.78383 1.20268 1.21210 1.16136 0.91135 0.92995 0.92291 0.84548 0.75458 0.75887 0.80521 0.75912 0.94430 0.97168 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.03 8.99 71.98 0.65 -3.38 16 2 C -0.02 -0.88 2.75 -11.54 -0.03 -0.91 16 3 H 0.06 2.54 8.11 -2.39 -0.02 2.52 16 4 C 0.10 3.15 9.66 88.66 0.86 4.01 16 5 N -0.27 -8.92 10.99 -50.45 -0.55 -9.48 16 6 N -0.56 -15.76 6.40 -54.65 -0.35 -16.11 16 7 C 0.50 14.71 7.66 133.41 1.02 15.73 16 8 N -0.58 -18.68 10.04 -197.42 -1.98 -20.66 16 9 C 0.33 9.01 12.23 181.05 2.21 11.23 16 10 N -0.55 -14.57 10.51 -194.86 -2.05 -16.61 16 11 C 0.18 4.29 7.02 39.49 0.28 4.57 16 12 C -0.15 -2.18 10.16 21.70 0.22 -1.96 16 13 C -0.12 -1.20 11.10 66.73 0.74 -0.46 16 14 S 0.15 2.21 22.91 -56.49 -1.29 0.91 16 15 C -0.34 -8.06 6.46 23.16 0.15 -7.91 16 16 C 0.00 0.04 3.50 29.85 0.10 0.14 16 17 C -0.52 -28.60 8.96 25.60 0.23 -28.37 16 18 H 0.04 2.50 7.30 -2.92 -0.02 2.48 16 19 C 0.00 0.25 5.47 84.65 0.46 0.71 16 20 N -0.95 -59.11 13.96 21.45 0.30 -58.81 16 21 Si 0.94 43.21 27.47 68.60 1.88 45.10 16 22 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 23 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 24 H -0.24 -9.74 6.54 99.48 0.65 -9.09 16 25 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.99 6.95 -2.39 -0.02 1.97 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.14 3.12 8.00 -2.91 -0.02 3.09 16 29 H 0.40 8.72 8.29 -213.32 -1.77 6.95 16 30 H 0.23 4.43 8.06 -2.91 -0.02 4.41 16 31 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 32 H 0.22 0.15 8.06 -2.91 -0.02 0.13 16 33 H 0.04 1.53 7.20 -2.39 -0.02 1.52 16 34 H 0.01 0.45 7.57 -2.39 -0.02 0.43 16 35 H 0.26 15.39 8.31 -92.70 -0.77 14.62 16 Total: -1.00 -74.04 319.16 2.15 -71.90 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -0.70 Total: 10.37 kcal Atomic # 6 Polarization: -13.50 SS G_CDS: 6.89 Total: -6.61 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -4.63 Total: -121.67 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -1.29 Total: 0.91 kcal Total: -74.04 2.15 -71.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766026793.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.954 kcal (2) G-P(sol) polarization free energy of solvation -74.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds