Wall clock time and date at job start Tue Mar 31 2020 06:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99793 * 2 1 4 4 H 1.48500 * 109.47089 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47304 * 300.00283 * 3 2 1 6 6 H 1.48504 * 109.47015 * 60.00405 * 3 2 1 7 7 C 1.38806 * 120.00077 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00181 * 200.71936 * 7 2 1 9 9 N 1.36937 * 120.00270 * 20.71301 * 7 2 1 10 10 C 1.46498 * 120.00010 * 37.83099 * 9 7 2 11 11 N 1.46493 * 109.47162 * 90.00025 * 10 9 7 12 12 C 1.35072 * 125.91369 * 94.71649 * 11 10 9 13 13 C 1.35026 * 108.02772 * 179.83901 * 12 11 10 14 14 C 1.41014 * 107.84212 * 0.42103 * 13 12 11 15 15 C 1.47896 * 126.06413 * 179.70154 * 14 13 12 16 16 N 1.30222 * 125.47621 * 180.02562 * 15 14 13 17 17 C 1.31371 * 117.02635 * 179.97438 * 16 15 14 18 18 C 1.33656 * 115.85111 * 359.97438 * 17 16 15 19 19 S 1.76173 * 125.47220 * 359.71280 * 15 14 13 20 20 N 1.31792 * 107.87192 * 359.74313 * 14 13 12 21 21 C 1.46508 * 119.99887 * 217.83355 * 9 7 2 22 22 C 1.52997 * 117.50062 * 14.22532 * 21 9 7 23 23 C 1.52999 * 117.49797 * 305.56214 * 21 9 7 24 24 H 0.96998 * 120.00153 * 354.93625 * 1 2 3 25 25 H 1.09000 * 109.47215 * 210.00097 * 10 9 7 26 26 H 1.09000 * 109.47225 * 330.00156 * 10 9 7 27 27 H 1.08003 * 125.98480 * 359.96956 * 12 11 10 28 28 H 1.08004 * 126.07716 * 180.18217 * 13 12 11 29 29 H 1.07997 * 122.06971 * 180.02562 * 17 16 15 30 30 H 1.07994 * 125.88368 * 180.02562 * 18 17 16 31 31 H 1.09002 * 115.54615 * 159.89733 * 21 9 7 32 32 H 1.08999 * 117.50084 * 359.97438 * 22 21 9 33 33 H 1.09003 * 117.49711 * 145.02456 * 22 21 9 34 34 H 1.09004 * 117.49301 * 214.98433 * 23 21 9 35 35 H 1.08996 * 117.49799 * 359.97438 * 23 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0380 -1.2325 0.3304 9 7 1.3921 -2.3495 -0.4205 10 6 0.4599 -2.3081 -1.5499 11 7 1.1933 -2.5382 -2.7970 12 6 1.3454 -3.7276 -3.4188 13 6 2.0783 -3.5252 -4.5346 14 6 2.3993 -2.1535 -4.5977 15 6 3.1968 -1.4936 -5.6541 16 7 3.4868 -0.2250 -5.7007 17 6 4.2093 0.1851 -6.7184 18 6 4.5670 -0.7569 -7.5964 19 16 3.9136 -2.2990 -7.0473 20 7 1.8632 -1.5639 -3.5479 21 6 1.6628 -3.6185 0.2598 22 6 2.3674 -3.5566 1.6164 23 6 3.1236 -4.0564 0.3829 24 1 -0.4850 0.8367 0.0741 25 1 -0.2967 -3.0827 -1.4251 26 1 -0.0227 -1.3315 -1.5871 27 1 0.9484 -4.6744 -3.0834 28 1 2.3704 -4.2803 -5.2494 29 1 4.4971 1.2192 -6.8375 30 1 5.1581 -0.6008 -8.4867 31 1 0.9142 -4.3977 0.1165 32 1 2.6299 -2.5718 2.0028 33 1 2.0826 -4.2954 2.3656 34 1 3.3359 -5.1238 0.3211 35 1 3.8832 -3.4006 -0.0425 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000766066954.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:27 Heat of formation + Delta-G solvation = 162.153030 kcal Electronic energy + Delta-G solvation = -20350.842124 eV Core-core repulsion = 17285.815742 eV Total energy + Delta-G solvation = -3065.026382 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 290.090 amu Computer time = 2.75 seconds Orbital eigenvalues (eV) -41.84941 -40.26184 -38.80858 -35.62338 -33.93975 -32.22699 -30.78598 -30.59103 -27.83076 -26.41839 -24.96205 -23.00897 -22.47223 -21.99503 -21.64325 -19.89073 -19.07180 -18.64930 -17.63743 -17.20077 -16.57110 -16.37696 -15.88779 -15.71424 -15.21895 -15.11367 -14.47947 -14.35159 -14.19686 -13.69592 -13.65847 -13.19722 -12.97107 -12.81172 -12.50618 -12.38965 -12.24673 -12.05602 -11.65244 -11.37613 -11.14398 -10.87820 -10.66281 -10.56886 -10.29197 -9.65554 -9.19595 -8.73839 -8.11685 -5.66197 -0.52823 0.24661 0.75406 1.18161 1.29842 1.40015 1.44188 1.64733 1.92347 2.35060 2.38729 3.06605 3.16502 3.34190 3.40176 3.85771 4.16241 4.18836 4.25115 4.38365 4.40697 4.45146 4.52311 4.72507 4.83527 4.90869 4.99001 5.11775 5.17117 5.21276 5.27592 5.50724 5.55766 5.70383 6.22292 6.46953 6.76371 6.92405 7.03372 7.59483 8.04956 8.91422 Molecular weight = 290.09amu Principal moments of inertia in cm(-1) A = 0.015655 B = 0.005539 C = 0.004588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.090078 B = 5053.782678 C = 6101.137771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.006 4.006 3 Si 0.946 3.054 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.275 1.275 7 C -0.263 4.263 8 H 0.042 0.958 9 N -0.546 5.546 10 C 0.356 3.644 11 N -0.353 5.353 12 C 0.058 3.942 13 C -0.266 4.266 14 C 0.080 3.920 15 C 0.119 3.881 16 N -0.505 5.505 17 C 0.012 3.988 18 C -0.234 4.234 19 S 0.164 5.836 20 N -0.293 5.293 21 C 0.098 3.902 22 C -0.184 4.184 23 C -0.205 4.205 24 H 0.260 0.740 25 H 0.109 0.891 26 H 0.094 0.906 27 H 0.212 0.788 28 H 0.173 0.827 29 H 0.192 0.808 30 H 0.223 0.777 31 H 0.129 0.871 32 H 0.067 0.933 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.770 -10.427 -12.485 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.205 4.205 3 Si 0.775 3.225 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.393 4.393 8 H 0.060 0.940 9 N -0.262 5.262 10 C 0.150 3.850 11 N -0.143 5.143 12 C -0.089 4.089 13 C -0.297 4.297 14 C -0.086 4.086 15 C -0.156 4.156 16 N -0.221 5.221 17 C -0.139 4.139 18 C -0.374 4.374 19 S 0.416 5.584 20 N -0.120 5.120 21 C -0.009 4.009 22 C -0.223 4.223 23 C -0.246 4.246 24 H 0.069 0.931 25 H 0.127 0.873 26 H 0.112 0.888 27 H 0.229 0.771 28 H 0.191 0.809 29 H 0.209 0.791 30 H 0.239 0.761 31 H 0.147 0.853 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.189 -9.819 -11.659 15.808 hybrid contribution 0.928 1.672 -0.201 1.922 sum 5.117 -8.147 -11.860 15.271 Atomic orbital electron populations 1.69845 1.06149 1.26876 1.51907 1.25553 0.95701 1.00732 0.98519 0.85568 0.78677 0.81264 0.76998 1.20678 1.22311 1.20090 1.18772 0.93727 0.86093 1.40678 0.94018 1.43976 1.49971 1.03750 1.28503 1.21686 0.87030 1.04117 0.72154 1.51340 1.38597 1.04553 1.19761 1.23186 0.99526 0.92583 0.93587 1.21551 1.10676 0.93984 1.03452 1.19890 1.01059 0.93828 0.93844 1.24798 1.01597 0.90971 0.98229 1.66635 1.15581 1.14449 1.25444 1.22068 0.98502 1.03225 0.90110 1.27583 1.08742 0.93926 1.07109 1.84379 1.45982 1.11023 1.17004 1.77860 1.12307 1.16841 1.05040 1.21623 0.93594 0.89353 0.96328 1.23077 1.05641 1.01748 0.91815 1.23256 0.97350 1.00599 1.03349 0.93072 0.87339 0.88802 0.77125 0.80937 0.79107 0.76083 0.85332 0.91386 0.86931 0.86884 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.50 11.44 21.65 0.25 -51.25 16 2 C -0.01 -0.32 4.97 84.86 0.42 0.10 16 3 Si 0.95 48.11 29.61 68.60 2.03 50.14 16 4 H -0.28 -14.44 7.11 99.48 0.71 -13.73 16 5 H -0.30 -15.69 7.11 99.48 0.71 -14.98 16 6 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 7 C -0.26 -14.43 8.04 84.03 0.68 -13.76 16 8 H 0.04 2.44 7.21 -2.91 -0.02 2.41 16 9 N -0.55 -25.79 3.02 -689.69 -2.09 -27.87 16 10 C 0.36 15.87 6.63 170.96 1.13 17.00 16 11 N -0.35 -14.98 3.85 -358.33 -1.38 -16.36 16 12 C 0.06 1.87 11.45 83.45 0.96 2.83 16 13 C -0.27 -8.50 10.59 22.21 0.24 -8.27 16 14 C 0.08 3.25 7.17 42.39 0.30 3.56 16 15 C 0.12 4.37 7.54 87.49 0.66 5.03 16 16 N -0.50 -19.68 10.58 -189.83 -2.01 -21.69 16 17 C 0.01 0.33 11.25 83.72 0.94 1.27 16 18 C -0.23 -4.76 11.35 66.78 0.76 -4.00 16 19 S 0.16 3.86 23.24 -56.49 -1.31 2.55 16 20 N -0.29 -14.36 12.62 -48.36 -0.61 -14.97 16 21 C 0.10 3.72 6.61 44.99 0.30 4.02 16 22 C -0.18 -6.72 9.81 30.62 0.30 -6.42 16 23 C -0.21 -7.27 10.09 30.62 0.31 -6.96 16 24 H 0.26 14.36 8.32 -92.71 -0.77 13.59 16 25 H 0.11 3.94 8.02 -2.39 -0.02 3.92 16 26 H 0.09 5.02 5.51 -2.39 -0.01 5.01 16 27 H 0.21 4.54 8.06 -2.91 -0.02 4.52 16 28 H 0.17 4.09 8.06 -2.91 -0.02 4.07 16 29 H 0.19 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.22 2.36 8.06 -2.91 -0.02 2.34 16 31 H 0.13 3.93 8.10 -2.39 -0.02 3.91 16 32 H 0.07 2.95 6.96 -2.39 -0.02 2.93 16 33 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 34 H 0.11 3.16 8.14 -2.39 -0.02 3.14 16 35 H 0.05 2.15 7.99 -2.39 -0.02 2.13 16 Total: -1.00 -73.83 321.81 2.98 -70.85 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: 1.11 Total: 14.21 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 6.99 Total: -5.60 kcal Atomic # 7 Polarization: -126.31 SS G_CDS: -5.84 Total: -132.14 kcal Atomic # 14 Polarization: 48.11 SS G_CDS: 2.03 Total: 50.14 kcal Atomic # 16 Polarization: 3.86 SS G_CDS: -1.31 Total: 2.55 kcal Total: -73.83 2.98 -70.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000766066954.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.001 kcal (2) G-P(sol) polarization free energy of solvation -73.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 162.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.75 seconds